Ggra7647.t2 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7647.t2
Unique NameGgra7647.t2
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length735
Homology
BLAST of Ggra7647.t2 vs. uniprot
Match: A0A2V3ICZ7 (Apoptotic protease-activating factor 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ICZ7_9FLOR)

HSP 1 Score: 224 bits (571), Expect = 7.300e-58
Identity = 124/301 (41.20%), Postives = 186/301 (61.79%), Query Frame = 0
Query:    7 EGGVYVYQNLFRHLIAANVLDEAVRVLLDPRWTVKQIRTSEAAPVVNDYLLVIDKMRKYSVENMSGGETFDTSKIHALELVKDAVKLAAPYAIQNEREVWFQLYGRLVESKDELGIGRFLEKIECYAEKPWVKAGAGCLLQGGRVVKQVWNLRGMKRIVTR-TWYRRDVSVYAFVVPESTVVVSSIVDSFEVWKLNEGCEGEHMCIWYGKVQKEVRRYLTCDDGSKLGLFMSDGRVEVWDVSNKRRLNRAQTVYRVEGFQGWSASEFSAFGSMLAFVYDGEKIRIWNTGLDGVKDVRLIHS 306
            E   Y+Y+NL RHLI + +L+EAVR+ LD RWTVKQIR   AA  + DY +V+D++ + + E +     F+TS + AL+LVKDAV LA PY I+N +EVWFQLYGRL+ES+    I ++LE IE YAEKPW++A  GCL+Q G V+++ W   G +R  T+  ++ +D SV    + E +  +  +   +EV KL+E  E +  C+W  + +  +++ + C+ GSKLG+   DG VEVWDV NK RLN  +    V         +FS+ G + AFV     +RIW    + V+++ ++ +
Sbjct:  642 EENPYLYENLCRHLIRSGLLEEAVRLYLDSRWTVKQIRVRGAAESLRDYEMVMDEVYRRNTEEVDKKCIFETSTLEALKLVKDAVALAVPYVIRNGKEVWFQLYGRLIESQHVSAISKYLEGIEMYAEKPWLRASPGCLVQAGGVLERTWIPAGDQRWKTQHVFFSKDNSVCC--IREKSDALGVV---YEVQKLDETGEAKPTCMWRIQTKNCIQKSVVCNRGSKLGVVTHDGCVEVWDVENKVRLNCGEHQQNVT-----HVGQFSSSGVLWAFVTAHTNVRIWTIDGEDVQELCVLQN 932          
BLAST of Ggra7647.t2 vs. uniprot
Match: A0A2V3IUA7 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUA7_9FLOR)

HSP 1 Score: 164 bits (414), Expect = 8.640e-40
Identity = 86/253 (33.99%), Postives = 144/253 (56.92%), Query Frame = 0
Query:    5 DTEGGVYVYQNLFRHLIAANVLDEAVRVLLDPRWTVKQIRTSEAAPVVNDYLLVIDKMRKYSVENMSGGETFDTSKI-HALELVKDAVKLAAPYAIQNEREVWFQLYGRLVESKDELGIGRFLEKIECYAEKPWVKAGAGCLLQGGRVVKQVWNLRGMKRIVTRTWYRRDVSVYAFVVPESTVVVSSIVDSFEVWKLNEGCEGEHMCIWYGKVQKEVRRYLTCDDGSKLGLFMSDGRVEVWDVSNKRRLNRAQ 256
            D +   Y+Y N+F HL+ A + +EA  + LDPRWTVKQ R +    V  D+  +     K ++  +    T D + I  ALEL+ DA+ LAAPY ++NERE+WFQLYGRL++ ++ + +  +LEKI  +AE+ W++A   C+ Q G ++  +W +   K +V   W  +D  V  F       +  +  + +E+W+L +  + +   IW+  ++ +  +    D+G KLGL + DGR+++WD  N ++L   Q
Sbjct:  235 DGQEDNYIYLNIFTHLLMAGLNNEAALLSLDPRWTVKQFRVNGEVQVFYDHSWL-----KTNLVKVKSIPTSDLAGIPEALELISDAITLAAPYVVRNEREIWFQLYGRLLQ-RESIVLDGYLEKIRRHAERSWLRAAGKCMTQAGGLITGLWAMDRAKFLVLDVWVGQDDWVLVF-----GKIKHAESEVYEMWRLEKRSQSKQKRIWFVTIRGKAMQSFASDNGRKLGLVVGDGRLQLWDTENDKQLGCEQ 476          
BLAST of Ggra7647.t2 vs. uniprot
Match: A0A2V3ITH8 (NB-ARC domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITH8_9FLOR)

HSP 1 Score: 97.1 bits (240), Expect = 6.420e-17
Identity = 51/161 (31.68%), Postives = 90/161 (55.90%), Query Frame = 0
Query:    5 DTEGGVYVYQNLFRHLIAANVLDEAVRVLLDPRWTVKQIRTSEAAPVVNDYLLVIDKMRKYSVENMSGGETFDTSKIHALELVKDAVKLAAPYAIQNEREVWFQLYGRLVESKDELG-IGRFLEKIECYAEKPWVKAGAGCLLQGGRVVKQVWNLRGMKRI 164
            + +  VY+++ L RHL+   + DEAV +LLDPRWT   +       + +DY + I  +++ + + +         +I AL ++  A +L+A    +N++EVW+QLYGRLV  K+E   +  +LE+IE +A++PW+K   G L   G  + +   +  +  I
Sbjct:  602 ELKDDVYIFERLCRHLLVGELSDEAVGLLLDPRWTTVSLVEYGIRNLKHDYEMTIQALQRRTTDYVG---RLAEERIRALRVILRAAQLSAHAVSRNQKEVWYQLYGRLVSFKEENSTLNDYLERIEEHAKRPWMKPSPGILQAPGCAITETLPIPPLNNI 759          
The following BLAST results are available for this feature:
BLAST of Ggra7647.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3ICZ77.300e-5841.20Apoptotic protease-activating factor 1 n=1 Tax=Gra... [more]
A0A2V3IUA78.640e-4033.99Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3ITH86.420e-1731.68NB-ARC domain-containing protein n=1 Tax=Gracilari... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 148..321
e-value: 1.7E-7
score: 32.4
coord: 335..599
e-value: 1.1E-9
score: 39.6
NoneNo IPR availableGENE3D1.25.40.370coord: 4..109
e-value: 9.1E-6
score: 27.6
NoneNo IPR availableSUPERFAMILY101908Putative isomerase YbhEcoord: 235..508

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000206_piloncontigtig00000206_pilon:34938..37397 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7647.t2Ggra7647.t2Gracilaria gracilis GNS1m malemRNAtig00000206_pilon 34938..37397 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7647.t2 ID=Ggra7647.t2|Name=Ggra7647.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=735bp
MVGADTEGGVYVYQNLFRHLIAANVLDEAVRVLLDPRWTVKQIRTSEAAP
VVNDYLLVIDKMRKYSVENMSGGETFDTSKIHALELVKDAVKLAAPYAIQ
NEREVWFQLYGRLVESKDELGIGRFLEKIECYAEKPWVKAGAGCLLQGGR
VVKQVWNLRGMKRIVTRTWYRRDVSVYAFVVPESTVVVSSIVDSFEVWKL
NEGCEGEHMCIWYGKVQKEVRRYLTCDDGSKLGLFMSDGRVEVWDVSNKR
RLNRAQTVYRVEGFQGWSASEFSAFGSMLAFVYDGEKIRIWNTGLDGVKD
VRLIHSLDRSCTLEWSLKNSWLGVGDYSRGLSVFGFQLDSTKEKQVWIAE
KVSYVVGMKWSPDGGKLGATDGETVRTIEVSPAHMSTDDTKRHWRRVRCN
GGGTMFATICDEGVGLWDQQARPKANGELLYRENGGRKVGIGVDLVWADD
GVLLAAVYEHEVQTWTVQSRVLAGVGQSEERIRKCALSANGRTLAVVTER
RVPLWQDDNANAVHFAAPETRFRSHLAVSHDGTLVCWFERGAKMMTVCNV
SDERRRTNLPFYGGEWMGTGDASFTGDERVRIEWGTAPARAVEWRWRSGA
SRGSIMAVPYGARVRMIGERIKYDDVWVTTLEAGMQSDYSWNRRLSTRAS
ALALIPSWDSRPSVCHLNKYTSWPFGLNSNAHAGAALPWTTLPRRALRST
SQILTVILTCIMRHSLSAQLLSRGVSCALGASLQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf