Ggra7627.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7627.t1
Unique NameGgra7627.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length249
Homology
[Close]
BLAST of Ggra7627.t1 vs. uniprot
Match: A0A2V3IL72 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IL72_9FLOR)

HSP 1 Score: 86.3 bits (212), Expect = 1.490e-16
Identity = 56/171 (32.75%), Postives = 88/171 (51.46%), Query Frame = 0 
Query:   67 FARTSQAGLTVQRGTSGVLQFSFNINAVEAETLANLDQQFSSSLTVSEMEEYSRLREDYRSGFGIPFLRWLGINLNNRRVTREEMERSFEMRENYNTQSNIA-RQIISNVQEQQLQISGELTAFGTSFIPTTVFAFIRIARLQTQDGMTLTVVSQSGDNLVAADASGNTVP 236
            F    QA L V+ G      F++ I+ V +  LA  D  F+S++   E   Y   +  Y  G  IPFLR LGI+LN        ++ +   R++Y     IA RQI+ + +  +L+I+G ++  G S  P+T   F++ +R+   D   L VVS + D++VA D S N +P
Sbjct:   63 FGPIGQATLNVRLGLRASFSFNYRIDGVTSAYLAASDHIFTSTMNSRERILYEEAKRGYNGGLDIPFLRQLGIHLNE----SHSLDANLVSRDDYYALKAIAARQIMQSFRGGKLRINGTISVIGVSEQPSTARVFVKFSRVTLVDNTVLHVVSSNNDDVVAGDDSHNMLP 229
[Close]
BLAST of Ggra7627.t1 vs. uniprot
Match: R7Q4Y7 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q4Y7_CHOCR)

HSP 1 Score: 72.0 bits (175), Expect = 1.760e-12
Identity = 36/100 (36.00%), Postives = 61/100 (61.00%), Query Frame = 0 
Query:  146 VTREEMERSFEMRENYNTQSNIARQIISNVQEQQLQISGELTAFGTSFIPTTVFAFIRIARLQTQDGMTLTVVSQSGDNLVAADASGNTVPSSGGDIDII 245
            +++EE+    E  E +  +      I+  V + +++I+G LTA G S IPT  FAF+R+AR++ +DG T  VVS   ++++AAD  G+ V +S  + DI+
Sbjct:   13 LSKEELVEKRESSEEFRKREQALTSILETVADTRIRINGTLTATGVSQIPTVAFAFVRLARIEFEDGSTQLVVSNKNEDIIAADEDGDAVGTSDQESDIL 112
The following BLAST results are available for this feature:
BLAST of Ggra7627.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IL721.490e-1632.75Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7Q4Y71.760e-1236.00Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..18
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..248
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000866_piloncontigtig00000866_pilon:447346..448092 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7627.t1Ggra7627.t1Gracilaria gracilis GNS1m malemRNAtig00000866_pilon 447346..448092 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7627.t1 ID=Ggra7627.t1|Name=Ggra7627.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=249bp
MFSANTILTLFALSFITLASSSAVTPNSNAVIDLPIVDIQEATLAVPLIR
QQQEDAQFAVNSSSTGFARTSQAGLTVQRGTSGVLQFSFNINAVEAETLA
NLDQQFSSSLTVSEMEEYSRLREDYRSGFGIPFLRWLGINLNNRRVTREE
MERSFEMRENYNTQSNIARQIISNVQEQQLQISGELTAFGTSFIPTTVFA
FIRIARLQTQDGMTLTVVSQSGDNLVAADASGNTVPSSGGDIDIIPLF*
back to top