Ggra7604.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7604.t1
Unique NameGgra7604.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length820
Homology
BLAST of Ggra7604.t1 vs. uniprot
Match: A0A2V3IVF5 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVF5_9FLOR)

HSP 1 Score: 1225 bits (3169), Expect = 0.000e+0
Identity = 635/819 (77.53%), Postives = 719/819 (87.79%), Query Frame = 0
Query:    1 MVQSASQQDLGALLLDAGGVRSYLSRTITDSHALRQVPRIAALCDEQRHHAVLSPDAVKADVALTSTAEAALSEARLTLEDIRQRATALLFEHHQRKQQLETLLSSFQHLSDARRQYLAVAKCRQIADAYIRALRPLALHQRHGSSADMHTVAANIDVLIDKVDAVRRKGSKYLFADDFHTNQRIVTSIENRAVDAVVKARAAFVNVLDNEFRHFGWPMKVPLPSTDSHIITSINFYVNQLSQLQRVANQGDYIPERTKWHRALSDSWAIAAILRAPLARFRYHFLESFDAQTAPSSAANPSPQRATSRFDRPEWAADFALHRIREATPFLSQVDIDGPQGADVKFAEGFCRVFAEKIAYDCELALRTSTNDADADALIAHASETAKQFDAKLRSGIIRIQAQPDAPSSSPAFVSSLHVLSMNESFLTSWASSELRIADAQVTLLLDQALDDSTAQAQDLTMSQESTVVTRERLEYLSQEIVNHVGSASQKARALESEERVATFLKLTELPLLQATRSRLKERVEETDYETLSVERIQKSTRASFLAHLIADGLEDRGLDAFYIAQEHRLDKGFYEDEISRLRALHSSNTTITTDAIASTFIEAVRADYAKRTRFGEIPAPDAAIVLTHDLSESLVNPLIMLESMLAAVKKGIPCRKSASAIWRTVATKLDAFFFDDIVLQCFAGGSRNAMAVAAEVNGFLSPTHMARMARQVAYDTSMFVSTFTAVSRNPSKFLPSCSECGIVLQMAANKVLRPNASLREEHEQVLEALERIASSDDEKMTLAAKQALDTAVNVVHISPREALELCAITGLRFAIRLM 819
            MV SA+Q DLG+ +L+AGGVR YL++TITD++ALRQ P IAALC+ QR  A  S + +KAD AL S AE+ALS+ARLTLEDIR +AT +LF+H QRKQ+L  L  +FQ+LS+AR++Y AVAKCRQIADAYIRALRPLALHQR G+  DMHTVA NID+LI+KVDAVRRKGSKYLFADDFHTNQRIVTSIENRAVDAVVKARAAFVNVLDNEFRHFGWPMKVP+P TDS+II+SINFYV QLSQLQRVANQGDYIPERTKWHRALSDSWAIAAILRAPLARFRYHFLES D Q+A SS ++   QRATSRFDRPEWAADFAL RIREATPFL+QVDI+GPQGADVKFAEGFCRVFAEKIAYDCELALRTSTNDADADALIAHASETAKQFDAKLRSGIIRI+ QP   SS+PAF+SSLHVLSMNESFLT+WASSELRIAD QVT+LLD+AL   + Q QDLT+SQE+T +T++ LEY+ QE+V+H+GSASQKARALESEER++TFLKLTELPLLQA RSRLKE +E+TDYE LS E++Q STRASF A LI++GLEDR LD FYI QE R   GFY+DEI RLRALH+SN+TI  DAIA++F EAVRA Y  R RFGEIP PDAAIVLTHDLSE+LVNPLI LESML+AVK GIPCRKSAS IWR VA KLD FFFDDIVLQCFAGGSRNAMAVAAEVNGFLSPTHMARMARQVAYDTSMFVSTF++V+ NPSKFL SCSE G VLQ+AAN+VLRPN    + HE+VL+AL R+  S+++++   A+  L++ ++V HI+PREALELCAI GLRFAIRLM
Sbjct:    1 MVLSAAQHDLGSQILEAGGVRQYLAKTITDTNALRQAPAIAALCEAQRKSAGRSAETLKADAALRSAAESALSDARLTLEDIRHKATTILFDHQQRKQKLHHLQQTFQNLSNARKEYAAVAKCRQIADAYIRALRPLALHQRDGTITDMHTVATNIDILIEKVDAVRRKGSKYLFADDFHTNQRIVTSIENRAVDAVVKARAAFVNVLDNEFRHFGWPMKVPVPETDSNIISSINFYVKQLSQLQRVANQGDYIPERTKWHRALSDSWAIAAILRAPLARFRYHFLESLDPQSA-SSKSHQQHQRATSRFDRPEWAADFALDRIREATPFLNQVDIEGPQGADVKFAEGFCRVFAEKIAYDCELALRTSTNDADADALIAHASETAKQFDAKLRSGIIRIEDQPSTESSAPAFLSSLHVLSMNESFLTTWASSELRIADTQVTILLDKALATLSEQPQDLTISQETTSLTKQELEYICQEVVDHIGSASQKARALESEERISTFLKLTELPLLQAIRSRLKEPIEDTDYENLSSEQVQHSTRASFCAQLISEGLEDRALDPFYITQEQRTGIGFYDDEIVRLRALHTSNSTIMIDAIANSFKEAVRAGYGDRARFGEIPTPDAAIVLTHDLSEALVNPLISLESMLSAVKNGIPCRKSASGIWREVAAKLDDFFFDDIVLQCFAGGSRNAMAVAAEVNGFLSPTHMARMARQVAYDTSMFVSTFSSVTSNPSKFLKSCSESGTVLQLAANRVLRPNVPPLQVHEEVLDALRRVKDSNEDEVMEDAQVVLESRISVSHITPREALELCAIAGLRFAIRLM 818          
BLAST of Ggra7604.t1 vs. uniprot
Match: R7QS95 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QS95_CHOCR)

HSP 1 Score: 714 bits (1844), Expect = 9.150e-249
Identity = 366/603 (60.70%), Postives = 461/603 (76.45%), Query Frame = 0
Query:  219 MKVPLPSTDSHIITSINFYVNQLSQLQRVANQGDYIPERTKWHRALSDSWAIAAILRAPLARFRYHFLESF--DAQTAPSSAANPSPQRATSRFDRPEWAADFALHRIREATPFLSQVDIDGPQGADVKFAEGFCRVFAEKIAYDCELALRTSTNDADADALIAHASETAKQFDAKLRSGIIRIQAQPDAPSSSPAFVSSLHVLSMNESFLTSWASSELRIADAQVTLLLDQALDDSTAQAQDLTMSQESTVVTRERLEYLSQEIVNHVGSASQKARALESEERVATFLKLTELPLLQATRSRLKERVEETDYETLSVERIQKSTRASFLAHLIADGLEDRGLDAFYIAQEHRLDKGFYEDEISRLRALHSSNTTITTDAIASTFIEAVRADYAKRTRFGEIPAPDAAIVLTHDLSESLVNPLIMLESMLAAVKKGIPCRKSASAIWRTVATKLDAFFFDDIVLQCFAGGSRNAMAVAAEVNGFLSPTHMARMARQVAYDTSMFVSTFTAVSRNPSKFLPSCSECGIVLQMAANKVLRPNASLREEHEQVLEALERIASSDDEKMTLAAKQALDTAVNVVHISPREALELCAITGLRFAIRLM 819
            MKVP+P +D  +I +IN YV QLSQLQRVA+ GDY+ ERT+WHRAL DSWA+AAILRAPLARF+YHFLESF  D Q +  +          SRFDRPEWAA+FAL RIREATPFLS++DI GPQ ADVKFAEGFCRVFAEK+AYDCELALRTSTND +AD LIAHASETAKQFD KLRSG+I +  +PD  S  P F+SSLHVLSMNESFLT+WASSELR+ADA+VT LL  AL    + A +   + E ++ ++  LE + Q+IV+HVG+AS K R+LES+ER+A FLKLTELPLLQ+ RS LK+ +E  D    + E I KS RASF A LI+D LEDR +D FY+ QE R   GFY DEI RLR+LHSSN+ +  +AI S F++ V+  Y ++ RFGEI APDAA+VLTHDLSESLVNPL  LE+ L  +K GIPCRK+AS +WR +A+KLD F FDD+VLQCF G SRNAM+ A+  N +LS T  ARMA+QVA+D + FVSTF AV+ +P +FLPSC+ECG +L++A+++VL P+   R+E E+V++ L  +A SD++++  +A + L + +   HI+PREALEL AI G++FAIR+M
Sbjct:    1 MKVPVPGSDDQLIATINSYVLQLSQLQRVASDGDYVQERTRWHRALCDSWAVAAILRAPLARFKYHFLESFRIDTQRSEPNGHATKTSSGISRFDRPEWAAEFALDRIREATPFLSKIDIGGPQTADVKFAEGFCRVFAEKVAYDCELALRTSTNDTNADVLIAHASETAKQFDNKLRSGVIHVAPRPDPGSGEPIFLSSLHVLSMNESFLTTWASSELRLADAEVTQLLTGALCIPDSLASEEQNAHEKSISSKVDLEEICQDIVDHVGNASVKCRSLESQERIAMFLKLTELPLLQSLRSSLKQNIEVMDEICPTTEHIVKSARASFCALLISDSLEDRSVDHFYLRQEERSGTGFYNDEIVRLRSLHSSNSALLCEAITSVFVDGVKTGYLEQARFGEISAPDAAVVLTHDLSESLVNPLTALENSLXXLKTGIPCRKTASTVWRPIASKLDRFVFDDVVLQCFVGASRNAMSAASSANSYLSATTCARMAKQVAFDVTTFVSTFNAVTASPEQFLPSCAECGRLLRIASSRVLLPSVPPRQEDEEVVKCLLAVAKSDEDQILESASRVLSSRIGATHIAPREALELLAIGGMKFAIRMM 603          
BLAST of Ggra7604.t1 vs. uniprot
Match: A0A2V3IVA5 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVA5_9FLOR)

HSP 1 Score: 181 bits (458), Expect = 1.500e-49
Identity = 100/140 (71.43%), Postives = 115/140 (82.14%), Query Frame = 0
Query:  382 ASETAKQFDAKLRSGIIRIQAQPDAPSSSPAFVSSLHVLSMNESFLTSWASSELRIADAQVTLLLDQALDDSTAQAQDLTMSQESTVVTRERLEYLSQEIVNHVGSASQKARALESEERVATFLKLTELPLLQATRSRLK 521
            ASETAKQFDAKL SGI RIQ  P   S  PAF+SSLHVLSM ESFLT+WASSELRIAD QVT+LLD+AL   + Q QDL++SQE+ ++T   LEY+ QEIV+++GS SQKARALESEER +TFLKLTEL LLQA RSRLK
Sbjct:    3 ASETAKQFDAKLLSGITRIQDLPPTESLDPAFISSLHVLSMKESFLTTWASSELRIADTQVTILLDKALARLSEQPQDLSISQETALLTDRGLEYICQEIVDYIGSESQKARALESEERTSTFLKLTELSLLQAIRSRLK 142          
BLAST of Ggra7604.t1 vs. uniprot
Match: A0A1X6PKU3 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PKU3_PORUM)

HSP 1 Score: 102 bits (253), Expect = 1.780e-18
Identity = 99/340 (29.12%), Postives = 146/340 (42.94%), Query Frame = 0
Query:  267 SWAIAAILRAPLARFRYHFLESFDAQTAPSSAANPSPQRAT----------SRFDRPEWAADFALHRIREATPFLSQ-------VDIDGPQGAD------VKFAEGFCRVFAEKIAYDCELALRTSTNDADADALIAHASETAKQFDAKLRSGI--IRIQAQPDAPSSSPAFVSSLHVLSMNESFLTSWASSELRIADAQVTLLLDQAL----DDSTAQAQDLTMSQESTVVTRERL---EYLSQEIVNHVGSASQKARALESEERVATFLKLTELPLLQATRSRLK---ERVEET-------DYETLSVERIQKSTRASFLAHLIADGLEDRGLDAFYI 564
            SWA AA+LRAPLARF+YHFL +  +  A ++AA  S    T           R DRPEWAA++AL R+ EA P LS+       V + G  G        +  A+ + RV+A K+  D    +     +A ADAL+ HA++ A  FDA L +G+               P   S+L  L  +  F  +W  + +R+A  +V   L  A+    D                      L   E      +  V +AS  +R +      A F++  ELPLL A R  L    + VE         +        +  + R++++A  +AD + DR    FYI
Sbjct:  202 SWAAAALLRAPLARFKYHFLGAGRSADAAAAAAAGSTLGGTRDAASAGLGMDRVDRPEWAAEYALARLAEAGPLLSRLALRFPYVPVGGAAGPPAGVXXTLAAADAYARVYAAKVGDD----VAAVAGEAGADALVLHAADAAAAFDASLVAGLGAAATXXXXXXXXHPPPAPSALAYLVADRPFFGAWTGAAVRVALPRVLSALAAAMAAPADXXXXXXXXXXXXXXXXXXXXXXLSAPEAAVAATLRAVTAASATSRGMARVAGAAAFVRRVELPLLAAVREELGGSGDAVEAAAALGGGPEAARAGAAAVATACRSAYVATRLADAIVDRADSLFYI 537          
The following BLAST results are available for this feature:
BLAST of Ggra7604.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IVF50.000e+077.53Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QS959.150e-24960.70Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A2V3IVA51.500e-4971.43Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A1X6PKU31.780e-1829.12Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007528RINT-1/Tip20PFAMPF04437RINT1_TIP1coord: 268..681
e-value: 3.6E-11
score: 42.6
IPR007528RINT-1/Tip20PANTHERPTHR13520RAD50-INTERACTING PROTEIN 1 RINT-1coord: 61..807
NoneNo IPR availablePANTHERPTHR13520:SF0RAD50-INTERACTING PROTEIN 1coord: 61..807

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000866_piloncontigtig00000866_pilon:290337..292796 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7604.t1Ggra7604.t1Gracilaria gracilis GNS1m malemRNAtig00000866_pilon 290337..292796 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7604.t1 ID=Ggra7604.t1|Name=Ggra7604.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=820bp
MVQSASQQDLGALLLDAGGVRSYLSRTITDSHALRQVPRIAALCDEQRHH
AVLSPDAVKADVALTSTAEAALSEARLTLEDIRQRATALLFEHHQRKQQL
ETLLSSFQHLSDARRQYLAVAKCRQIADAYIRALRPLALHQRHGSSADMH
TVAANIDVLIDKVDAVRRKGSKYLFADDFHTNQRIVTSIENRAVDAVVKA
RAAFVNVLDNEFRHFGWPMKVPLPSTDSHIITSINFYVNQLSQLQRVANQ
GDYIPERTKWHRALSDSWAIAAILRAPLARFRYHFLESFDAQTAPSSAAN
PSPQRATSRFDRPEWAADFALHRIREATPFLSQVDIDGPQGADVKFAEGF
CRVFAEKIAYDCELALRTSTNDADADALIAHASETAKQFDAKLRSGIIRI
QAQPDAPSSSPAFVSSLHVLSMNESFLTSWASSELRIADAQVTLLLDQAL
DDSTAQAQDLTMSQESTVVTRERLEYLSQEIVNHVGSASQKARALESEER
VATFLKLTELPLLQATRSRLKERVEETDYETLSVERIQKSTRASFLAHLI
ADGLEDRGLDAFYIAQEHRLDKGFYEDEISRLRALHSSNTTITTDAIAST
FIEAVRADYAKRTRFGEIPAPDAAIVLTHDLSESLVNPLIMLESMLAAVK
KGIPCRKSASAIWRTVATKLDAFFFDDIVLQCFAGGSRNAMAVAAEVNGF
LSPTHMARMARQVAYDTSMFVSTFTAVSRNPSKFLPSCSECGIVLQMAAN
KVLRPNASLREEHEQVLEALERIASSDDEKMTLAAKQALDTAVNVVHISP
REALELCAITGLRFAIRLM*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007528RINT1_Tip20