Ggra7570.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7570.t1
Unique NameGgra7570.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length280
Homology
BLAST of Ggra7570.t1 vs. uniprot
Match: A0A2V3IUX7 (Putative methionine--tRNA ligase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUX7_9FLOR)

HSP 1 Score: 453 bits (1166), Expect = 1.600e-159
Identity = 219/279 (78.49%), Postives = 251/279 (89.96%), Query Frame = 0
Query:    1 MKNAGFIASTATALWRSSAAKISTEALGDRMVSLVWSGRPSSAFTVLYAPSGAKFRSRRVVAHPRINLTGLKPGVPYEVQVTGNGFEALTSFTTVATAQSPGTASKDGGSAELPLTEISRLEIRVGKIVECEKHPDADSLYVEKIDVGEEEPRTIVSGLVKYVPLEKMIGRTVVVLCNLKPRAMRGVTSHGMLLCASNEDRTVVDPLSAPADAPIGELIKFEGHKSAPIDPSNRATKAFDRIADGLKTDANGMAMFEDVPFVTSAGACFSPEKLVGSIS 279
            MK+ GF+AS+ATALWRSSAAKIST+A+G+RMVSLVWSG+P+S +TVLY+P GAKFRSRRVVAHPR+NL GLKPG PY+V+VTG+ F++ TSFTTVATAQ+P        + +LPLTE+SRLEIRVGKI+ECEKHPDAD+LYVEK+DVGEEEPRTIVSGLVKY+PLEKM+GR+VVVLCNLKPRAMRGVTSHGMLLCASNED TVVDPL AP D PIGEL+ FEGHKSAPIDPSNRATKAFDR+ADGL T+  G+AMFEDVPF TSAG CFS E ++GSIS
Sbjct:    1 MKSVGFVASSATALWRSSAAKISTDAIGERMVSLVWSGKPASTYTVLYSPIGAKFRSRRVVAHPRVNLKGLKPGTPYDVRVTGDAFDSSTSFTTVATAQAPAAVGDGDSAPDLPLTELSRLEIRVGKIIECEKHPDADTLYVEKVDVGEEEPRTIVSGLVKYIPLEKMVGRSVVVLCNLKPRAMRGVTSHGMLLCASNEDHTVVDPLCAPQDTPIGELVTFEGHKSAPIDPSNRATKAFDRVADGLSTNEAGVAMFEDVPFSTSAGPCFSAENVIGSIS 279          
BLAST of Ggra7570.t1 vs. uniprot
Match: A0A7S1TKX4 (Hypothetical protein n=2 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TKX4_9RHOD)

HSP 1 Score: 263 bits (673), Expect = 7.740e-84
Identity = 149/283 (52.65%), Postives = 184/283 (65.02%), Query Frame = 0
Query:   21 KISTEALGDRM-VSLVWSG---RPSSAFTVLYAP---SGAKFRSRRVVAHPRINLTGLKPGVPY-------------EVQVTGNGFEALTSFTTVATAQSP-GTASKDGG---SAELPLTEISRLEIRVGKIVECEKHPDADSLYVEKIDVGEEEPRTIVSGLVKYVPLEKMIGRTVVVLCNLKPRAMRGVTSHGMLLCASNEDRTVVDPLSAPADAPIGELIKFEGHKSAPIDPSNRATKAFDRIADGLKTDANGMAMFEDVPFVTSAGACFSPEKLVGSIS 279
            +++ E+ GD   +   W G     S  F V Y+P   + A   S R V+ P + L G++P V Y             E + T     A++     A  Q P G  + +GG     + P+TE SRLEIRVG+I+ECEKHPDAD+LYVEK+DVGE E RTIVSGLVKYVPL++MIGRTVVVLCNLKPRAMRGVTS GMLLCASNED T VDPL+AP D PIG LI   GH+SAP++  NRA+KAFDR+A   +TD +G+A  ED  F T  G C+SP KL GS+S
Sbjct:   52 QVTLESHGDATTLRWEWDGSREEASHGFRVRYSPVEMAAAGIWSWRTVSQPMVRLAGMRPAVSYTAGIQPLFGSAANEWRTTQFRTHAISGGEIDAVGQDPVGVPAGEGGVDSGNDAPVTEFSRLEIRVGRILECEKHPDADTLYVEKVDVGEPETRTIVSGLVKYVPLDEMIGRTVVVLCNLKPRAMRGVTSFGMLLCASNEDHTEVDPLTAPEDTPIGTLITAPGHRSAPVEAGNRASKAFDRVAAQFRTDGDGIAYVEDAAFSTPNGPCYSPRKLQGSVS 334          
BLAST of Ggra7570.t1 vs. uniprot
Match: A0A7S0FZY8 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0FZY8_9RHOD)

HSP 1 Score: 261 bits (667), Expect = 1.550e-83
Identity = 142/267 (53.18%), Postives = 183/267 (68.54%), Query Frame = 0
Query:   18 SAAKISTEALGDRMVSLVWSGRPSSAFTVLYAPSGAKFRSRRVVAHPRINLTGLKPGVPYEVQVTGNGFEAL---TSFTTVATAQSPGTASKDGG--SAELPLTEISRLEIRVGKIVECEKHPDADSLYVEKIDVGEEEPRTIVSGLVKYVPLEKMIGRTVVVLCNLKPRAMRGVTSHGMLLCASNEDRTVVDPLSAPADAPIGELIKFEGHKSAPIDPSNRATKAFDRIADGLKTDANGMAMFEDVPFVTSAGACFSPEKLVGSIS 279
            SA  IS + +G   V L W    S A+ V Y  S +   S R V    + L GL PG  Y++ ++    + L    SFTT++ A++P +A  +    + +LPLTE+SRLEIR G +V+C+KHP+AD+LYVE IDVGE+EPRTIVSGLVK++  E++ GR VVVLCNLKPR MRG+ S GMLLCASN D + VDPLS P +   GELI F+GHKSAPIDP NRATKAFDR+AD L T+ +G+A ++D  F T  G C+SP KLVG +S
Sbjct:   26 SADNISFQNIGLGSVLLSWPASGSRAYRVAYK-SDSNPASFRTVTRSSVILKGLSPGSSYDMSISELDSKKLLSRASFTTMS-AETPESAGAESEKQAEDLPLTELSRLEIRAGTVVQCKKHPEADTLYVETIDVGEQEPRTIVSGLVKFLSEEELTGRRVVVLCNLKPRTMRGIISQGMLLCASNADHSEVDPLSPPEECGNGELITFDGHKSAPIDPGNRATKAFDRVADDLSTNEDGIAQYQDAAFKTPFGPCYSPRKLVGGVS 290          
BLAST of Ggra7570.t1 vs. uniprot
Match: A0A7S0ZE83 (Hypothetical protein n=2 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZE83_9RHOD)

HSP 1 Score: 255 bits (651), Expect = 6.190e-82
Identity = 120/168 (71.43%), Postives = 144/168 (85.71%), Query Frame = 0
Query:  112 ELPLTEISRLEIRVGKIVECEKHPDADSLYVEKIDVGEEEPRTIVSGLVKYVPLEKMIGRTVVVLCNLKPRAMRGVTSHGMLLCASNEDRTVVDPLSAPADAPIGELIKFEGHKSAPIDPSNRATKAFDRIADGLKTDANGMAMFEDVPFVTSAGACFSPEKLVGSIS 279
            ELPLTE+SRLEIRVGK+VECE+HPDAD+LYVEK+DVGE+EPRTIVSGLV ++  E++ GRTV+VLCNLKPRAMRG+ SHGMLLCASNED T VDPL+AP DA IG LI FEGH++AP+D  NRA+KAFD++A    TDA+G+A F   PF+T AGAC+SP KL GS+S
Sbjct:   65 ELPLTELSRLEIRVGKVVECERHPDADTLYVEKVDVGEDEPRTIVSGLVNFMSQEELNGRTVIVLCNLKPRAMRGIKSHGMLLCASNEDHTKVDPLTAPPDAAIGSLITFEGHRAAPMDAGNRASKAFDKVASEFNTDADGIARFNATPFMTEAGACYSPAKLQGSVS 232          
BLAST of Ggra7570.t1 vs. uniprot
Match: A0A5J4Z2W6 (Putative methionine--tRNA ligase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z2W6_PORPP)

HSP 1 Score: 247 bits (631), Expect = 1.500e-78
Identity = 131/224 (58.48%), Postives = 162/224 (72.32%), Query Frame = 0
Query:   57 SRRVVAHPRINLTGLKPGVPYEVQVTGNGFEALTSFTTVATAQSPGTASKDGGSAELPLTEISRLEIRVGKIVECEKHPDADSLYVEKIDVGEEE-PRTIVSGLVKYVPLEKMIGRTVVVLCNLKPRAMRGVTSHGMLLCASNEDRTVVDPLSAPADAPIGELIKFEGHKSAPIDPSNRATKAFDRIADGLKTDANGMAMFEDVPFVTSAGACFSPEKLVGSIS 279
            SR V    R    G  PG   E    G G   ++S    + A    TA+ + G + LPLTE+SRLEIRVGKI++CEKHP+ADSLYVE++DVG+E   R IVSGLV +VPLE+M+ RTV+VLCNLKPR MRG++SHGMLLCASNED + VDPL+AP   PIG L+ FEGH+S P    NRA+KAFD++A  L+TDA G+AMFE VPF T +G CFSP+KLVG +S
Sbjct:   41 SREVWRSRRCGHVGAFPGATRE----GAGRMRMSSLEDGSAALE--TAAGNEGES-LPLTELSRLEIRVGKIIKCEKHPEADSLYVEEVDVGDESGARVIVSGLVSFVPLEEMVDRTVIVLCNLKPRNMRGISSHGMLLCASNEDHSQVDPLTAPEGVPIGALVTFEGHRSEPAPAGNRASKAFDKVAKSLRTDATGVAMFEQVPFATPSGPCFSPKKLVGPVS 257          
BLAST of Ggra7570.t1 vs. uniprot
Match: W7U6C4 (Endothelial monocyte-activating polypeptide ii pro-emap ii family protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6C4_9STRA)

HSP 1 Score: 203 bits (516), Expect = 6.830e-60
Identity = 121/245 (49.39%), Postives = 152/245 (62.04%), Query Frame = 0
Query:   40 PSSAFTVLYAPSGAKFRSRRVVAHPRINLTGLKPGVPYEVQVTGNGFEALTSFTTVATAQSPGTASKDGGSA-ELP---LTEISRLEIRVGKIVECEKHPDADSLYVEKIDVGEEE-PRTIVSGLVKYVPLEKMIGRTVVVLCNLKPRAMRGVTSHGMLLCASNEDRTVVDPLSAPADAPIGELIKFEGHKSAPIDPSNRATKAFDRIADGLKTDANGMAMFEDVPFVTSAGACFSPEKLVGSIS 279
            PS A+ + Y+  G   R           + GL  G  Y+V V     E L            G A  + G   E P   LTE+SRLEIR GKI+E  +HP+AD LYVEKID+GE + PRTIVSGLVKY   E+++GR VVVL NLKPRA++G+TSHGMLLCASNED TVV PLS P    +GELI FEGH++AP  P NRA KAFDR+A+ L    + +A ++ +PF+TS G   +   + GSIS
Sbjct:  125 PSHAYRIDYSRDGVPNRLTLGGTSREAMIRGLHAGSQYDVAVVRVEREGLAEKVV-------GRARLETGKVVEAPKGELTELSRLEIRTGKILEISRHPEADGLYVEKIDLGEADGPRTIVSGLVKYQTEEELLGREVVVLANLKPRALKGITSHGMLLCASNEDHTVVKPLSPPPGVALGELITFEGHRAAPEPPGNRAGKAFDRVAEELGAGEDMIATYKGIPFMTSKGPVTT--GMAGSIS 360          
BLAST of Ggra7570.t1 vs. uniprot
Match: A0A7S0XDL6 (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XDL6_9STRA)

HSP 1 Score: 196 bits (497), Expect = 6.990e-59
Identity = 97/166 (58.43%), Postives = 126/166 (75.90%), Query Frame = 0
Query:  115 LTEISRLEIRVGKIVECEKHPDADSLYVEKIDVGEEE-PRTIVSGLVKYVPLEKMIGRTVVVLCNLKPRAMRGVTSHGMLLCASNEDRTVVDPLSAPADAPIGELIKFEGHKSAPIDPSNRATKAFDRIADGLKTDANGMAMFEDVPFVTSAGACFSPEKLVGSIS 279
            LTE+SRLEIRVGKIVE  +HP+AD LYVEKID+GE   PRTIVSGLV++  +++++   V+VLCNLKPRA++G+TS+GM+LC +++D T VDPL  P DAPIG+LI FEGH S P++P NRATKAF +IADG   +  G+A +  +PF T  G   S   L+G IS
Sbjct:   52 LTELSRLEIRVGKIVEVGRHPEADGLYVEKIDLGEPTGPRTIVSGLVQFCTVDRLLNNNVIVLCNLKPRALKGITSNGMVLCTTSKDETKVDPLIPPPDAPIGQLITFEGHLSEPVEPGNRATKAFTKIADGFYVNEQGVATYNGIPFSTPNGPVTS--TLIGKIS 215          
BLAST of Ggra7570.t1 vs. uniprot
Match: A0A7S2V4I0 (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4I0_9STRA)

HSP 1 Score: 193 bits (490), Expect = 2.000e-57
Identity = 103/176 (58.52%), Postives = 125/176 (71.02%), Query Frame = 0
Query:  104 ASKDGGSAELPLTEISRLEIRVGKIVECEKHPDADSLYVEKIDVGEEEPRTIVSGLVKYVPLEKMIGRTVVVLCNLKPRAMRGVTSHGMLLCASNEDRTVVDPLSAPADAPIGELIKFEGHKSAPIDPSNRATKAFDRIADGLKTDANGMAMFEDVPFVTSAGACFSPEKLVGSIS 279
            A ++  +    L E SRLEIRVGKIV+   HPDAD LYVEKID GE+EPRTIVSGLVKY+  E ++ R+VVVL NLKPRAMRG+TSHGMLLCASNED + V PLS P  +  GELI  EG  S P++P NRA+KAFD++A  L  + +  A F+  PF+T  G C S  K  G+IS
Sbjct:   72 AKEEAAAPAGELNEFSRLEIRVGKIVDVSVHPDADGLYVEKIDCGEDEPRTIVSGLVKYLKAEDLLDRSVVVLANLKPRAMRGITSHGMLLCASNEDHSQVVPLSPPESSVPGELITVEGTLSQPLEPCNRASKAFDKVAKDLYVNDDLQATFDGKPFLTPNGPCTSTMK--GAIS 245          
BLAST of Ggra7570.t1 vs. uniprot
Match: A0A6H5KCD4 (tRNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCD4_9PHAE)

HSP 1 Score: 188 bits (478), Expect = 1.200e-56
Identity = 101/161 (62.73%), Postives = 119/161 (73.91%), Query Frame = 0
Query:  115 LTEISRLEIRVGKIVECEKHPDADSLYVEKIDVGEEEPRTIVSGLVKYVPLEKMIGRTVVVLCNLKPRAMRGVTSHGMLLCASNEDRTVVDPLSAPADAPIGELIKFEGHKSAPIDPSNRATKAFDRIADGLKT-----DANGMAMFEDVPFVTSAGACFS 270
            + E+SRLEIRVG+ +EC KHPDADSLYVE ID GE EPRTIVSGLV YVP ++M GR VV LCNL  RAMRGVTS GMLLCASN+D + VDPLS P  A IGELI FEG  SAP  PS+ A++A+    +G+KT     D  G+A ++  P +TSAGAC S
Sbjct:    1 MMELSRLEIRVGRCLECSKHPDADSLYVETIDFGEGEPRTIVSGLVAYVPEDEMRGRMVVGLCNLPSRAMRGVTSSGMLLCASNDDHSSVDPLSPPEGAKIGELITFEGVLSAPAPPSSGASRAWSATREGMKTAEATADGVGVAGWDGRPMLTSAGACTS 161          
BLAST of Ggra7570.t1 vs. uniprot
Match: A0A0G4EPM0 (Tryptophan--tRNA ligase n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EPM0_VITBC)

HSP 1 Score: 192 bits (487), Expect = 2.820e-53
Identity = 97/161 (60.25%), Postives = 119/161 (73.91%), Query Frame = 0
Query:  105 SKDGGSAELPLTEISRLEIRVGKIVECEKHPDADSLYVEKIDVGEEEPRTIVSGLVKYVPLEKMIGRTVVVLCNLKPRAMRGVTSHGMLLCASNEDRTVVDPLSAPADAPIGELIKFEGHKSAPIDPSNRATKAFDRIADGLKTDANGMAMFEDVPFVTSA 265
            S + GS E    +IS LEIRVG+I+E E+HPDADSLYVEK+D+GE EPRTIVSGLV Y+  E++ GR V+VLCNLKPRAMRG+ S GMLLC+S+ D T V PLS P  A +GEL+ F+G  S P+ P N+A KAFDR+A+ L     G+A F  VPF TSA
Sbjct:  445 SAEEGSGEREKGDISLLEIRVGRILEVERHPDADSLYVEKVDLGEGEPRTIVSGLVPYLSQEELQGRNVIVLCNLKPRAMRGIKSEGMLLCSSSPDGTRVAPLSPPEGAALGELVTFDGWASEPVAPGNKAGKAFDRVAEDLSVGEQGVATFRSVPFQTSA 605          
The following BLAST results are available for this feature:
BLAST of Ggra7570.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IUX71.600e-15978.49Putative methionine--tRNA ligase n=1 Tax=Gracilari... [more]
A0A7S1TKX47.740e-8452.65Hypothetical protein n=2 Tax=Compsopogon caeruleus... [more]
A0A7S0FZY81.550e-8353.18Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S0ZE836.190e-8271.43Hypothetical protein n=2 Tax=Timspurckia oligopyre... [more]
A0A5J4Z2W61.500e-7858.48Putative methionine--tRNA ligase n=1 Tax=Porphyrid... [more]
W7U6C46.830e-6049.39Endothelial monocyte-activating polypeptide ii pro... [more]
A0A7S0XDL66.990e-5958.43Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A7S2V4I02.000e-5758.52Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6H5KCD41.200e-5662.73tRNA-binding domain-containing protein n=1 Tax=Ect... [more]
A0A0G4EPM02.820e-5360.25Tryptophan--tRNA ligase n=3 Tax=Vitrella brassicaf... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002547tRNA-binding domainPFAMPF01588tRNA_bindcoord: 123..217
e-value: 6.1E-34
score: 116.0
IPR002547tRNA-binding domainPROSITEPS50886TRBDcoord: 117..220
score: 34.814125
NoneNo IPR availableGENE3D2.40.50.140coord: 115..279
e-value: 2.7E-57
score: 195.3
NoneNo IPR availablePANTHERPTHR11586:SF39TYROSINE--TRNA LIGASE, CYTOPLASMICcoord: 98..270
NoneNo IPR availablePANTHERPTHR11586TRNA-AMINOACYLATION COFACTOR ARC1 FAMILY MEMBERcoord: 98..270
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..19
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..279
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availableCDDcd02799tRNA_bind_EMAP-II_likecoord: 118..219
e-value: 2.3809E-61
score: 187.436
IPR003961Fibronectin type IIICDDcd00063FN3coord: 21..82
e-value: 0.00380245
score: 34.0091
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 118..271

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000866_piloncontigtig00000866_pilon:92644..93483 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7570.t1Ggra7570.t1Gracilaria gracilis GNS1m malemRNAtig00000866_pilon 92644..93483 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7570.t1 ID=Ggra7570.t1|Name=Ggra7570.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=280bp
MKNAGFIASTATALWRSSAAKISTEALGDRMVSLVWSGRPSSAFTVLYAP
SGAKFRSRRVVAHPRINLTGLKPGVPYEVQVTGNGFEALTSFTTVATAQS
PGTASKDGGSAELPLTEISRLEIRVGKIVECEKHPDADSLYVEKIDVGEE
EPRTIVSGLVKYVPLEKMIGRTVVVLCNLKPRAMRGVTSHGMLLCASNED
RTVVDPLSAPADAPIGELIKFEGHKSAPIDPSNRATKAFDRIADGLKTDA
NGMAMFEDVPFVTSAGACFSPEKLVGSIS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002547tRNA-bd_dom
IPR003961FN3_dom
IPR012340NA-bd_OB-fold