Ggra7559.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7559.t1
Unique NameGgra7559.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length157
Homology
BLAST of Ggra7559.t1 vs. uniprot
Match: A0A2V3IWR6 (Cytidine deaminase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IWR6_9FLOR)

HSP 1 Score: 267 bits (683), Expect = 6.390e-90
Identity = 133/156 (85.26%), Postives = 147/156 (94.23%), Query Frame = 0
Query:    1 MEGVAAETHTAPSISTDELDQLMAEADKAKLKAYAPYSKFRVGAALLASDGTIYSGANVENSSYGLTVCAERTAVFHAASCGARSFRAIVVTTDIAESYVYPCGACRQVMSEFGNFDVYCLRSNGRVSRTTLHELIPYAFSPRDLSKGQGKAEEEE 156
            M+ V AET TAPSI+++ELD+L+AEADKAKLKAYAPYSKFRVGAALL+SDG IY GANVENSSYGLTVCAER AVFHAASCGARSFRAIV+TTDI+ES VYPCGACRQVMSEFGNFDVYCLR+NG++SRTTL++LIPYAFSP DLSKGQG AEEEE
Sbjct:    1 MDHVIAETQTAPSINSEELDRLVAEADKAKLKAYAPYSKFRVGAALLSSDGMIYPGANVENSSYGLTVCAERCAVFHAASCGARSFRAIVITTDISESTVYPCGACRQVMSEFGNFDVYCLRANGQISRTTLNDLIPYAFSPSDLSKGQGMAEEEE 156          
BLAST of Ggra7559.t1 vs. uniprot
Match: R7QLF7 (Cytidine deaminase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QLF7_CHOCR)

HSP 1 Score: 247 bits (631), Expect = 2.130e-81
Identity = 124/158 (78.48%), Postives = 140/158 (88.61%), Query Frame = 0
Query:    1 MEGVAAETHT--APSISTDELDQLMAEADKAKLKAYAPYSKFRVGAALLASDGTIYSGANVENSSYGLTVCAERTAVFHAASCGARSFRAIVVTTDIAESYVYPCGACRQVMSEFGNFDVYCLRSNGRVSRTTLHELIPYAFSPRDLSKGQGKAEEEE 156
            M+ V  ET T  APSI+ D+LD L+ EAD+AK+KAYAPYSKFRVGAALLA DGTIYSGANVENSSYGLTVCAER+ +FHA S G R+F+AIVVTTDI+ES+VYPCGACRQVMSEFGNFDVYCLR NG+VSRTTL +LIP+AFSP DLSKGQGK EE+E
Sbjct:    1 MDQVITETKTNAAPSITPDQLDMLVEEADRAKMKAYAPYSKFRVGAALLAEDGTIYSGANVENSSYGLTVCAERSTIFHAVSNGVRAFQAIVVTTDISESFVYPCGACRQVMSEFGNFDVYCLRPNGKVSRTTLADLIPFAFSPSDLSKGQGKGEEDE 158          
BLAST of Ggra7559.t1 vs. uniprot
Match: A0A7S0G0F3 (Cytidine deaminase n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G0F3_9RHOD)

HSP 1 Score: 197 bits (500), Expect = 4.180e-62
Identity = 98/152 (64.47%), Postives = 121/152 (79.61%), Query Frame = 0
Query:    4 VAAETHTAPSISTDELDQLMAEADKAKLKAYAPYSKFRVGAALLASDGTIYSGANVENSSYGLTVCAERTAVFHAASCGARSFRAIVVTTDIAESYVYPCGACRQVMSEFGNFDVYCLRSNGRVSRTTLHELIPYAFSPRDLSKGQGKAEEE 155
            +A E  TAPS+  DELD+LMA ADKAKLKAY+PYS +RVGAALLAS G  Y G NVENSSYGLT+CAERTA+F AAS G R+F+AIVVT+D +E ++YPCGACRQV+SEFGN DVY ++ +GR+ RTTL  LIP++FS + L   + +  EE
Sbjct:    1 MAQERSTAPSLDEDELDRLMAVADKAKLKAYSPYSNYRVGAALLASSGKPYGGCNVENSSYGLTICAERTALFKAASNGERNFKAIVVTSDHSEEFIYPCGACRQVLSEFGNMDVYMMQPSGRIRRTTLEALIPFSFSKKVLDDAEKQRLEE 152          
BLAST of Ggra7559.t1 vs. uniprot
Match: A0A1X6P732 (Cytidine deaminase n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P732_PORUM)

HSP 1 Score: 182 bits (463), Expect = 2.090e-56
Identity = 89/138 (64.49%), Postives = 111/138 (80.43%), Query Frame = 0
Query:   10 TAPSISTDELDQLMAEADKAKLKAYAPYSKFRVGAALLASDGTIYSGANVENSSYGLTVCAERTAVFHAASCGARSFRAIVVTTDIAESYVYPCGACRQVMSEFGNFDVYCLRSNGRVSRTTLHELIPYAFSPRDLSK 147
            TAPS S  +LD L+  AD+ KL+AYA YSKFRVGAALLA+DGT++SG NVENSSYGLT+CAER A+F A + G  SFRA+VVT D   +YVYPCGACRQV+SEFG+ DVYC++ +G+VSR+ L +L+P AFS  +L K
Sbjct:   16 TAPSCSPQQLDALIELADRTKLRAYADYSKFRVGAALLAADGTMFSGCNVENSSYGLTMCAERVALFTAVAAGFNSFRAVVVTHDAKGTYVYPCGACRQVLSEFGDIDVYCVQPDGKVSRSRLSQLLPVAFSKAELDK 153          
BLAST of Ggra7559.t1 vs. uniprot
Match: hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644D8F6 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644D8F6)

HSP 1 Score: 151 bits (381), Expect = 3.410e-44
Identity = 74/132 (56.06%), Postives = 97/132 (73.48%), Query Frame = 0
Query:   15 STDELDQLMAEADKAKLKAYAPYSKFRVGAALLASDGTIYSGANVENSSYGLTVCAERTAVFHAASCGARSFRAIVVTTDIAESYVYPCGACRQVMSEFGNFDVYCLRSNGR-VSRTTLHELIPYAFSPRDL 145
            S +EL++++  A  AK KAY PYS FRVGAALL  DGTI+SG NVEN SYGLT+CAERTA   A S G   ++AIVVTTD+ + ++ PCGACRQ   EFGNF+VYC++ + + + +T+ +EL+P  F P DL
Sbjct:    3 SQEELNKMIKVASDAKSKAYCPYSHFRVGAALLCEDGTIFSGCNVENGSYGLTICAERTAYTKAVSEGHTKYKAIVVTTDVEDRFITPCGACRQFGIEFGNFEVYCVKPDQKTIHKTSTNELLPGGFGPSDL 134          
BLAST of Ggra7559.t1 vs. uniprot
Match: F4QEH0 (Cytidine deaminase n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4QEH0_CAVFA)

HSP 1 Score: 149 bits (377), Expect = 1.380e-43
Identity = 75/129 (58.14%), Postives = 92/129 (71.32%), Query Frame = 0
Query:   18 ELDQLMAEADKAKLKAYAPYSKFRVGAALLASDGTIYSGANVENSSYGLTVCAERTAVFHAASCGARSFRAIVVTTDIAESYVYPCGACRQVMSEFGNFDVYCLRSNGRVS-RTTLHELIPYAFSPRDL 145
            EL+QL+  A  AK KAY PYS FRVGAALL  DG IY+G NVEN SYGLT+CAERTA   A S G + F+ +VVTTD+ + ++ PCGACRQ   EFGNFDVYC++ N     +TT   L+P +F+P DL
Sbjct:    6 ELEQLIDAACDAKTKAYCPYSNFRVGAALLGEDGKIYTGCNVENGSYGLTICAERTAYTKAVSEGCKKFKTLVVTTDVTDRFITPCGACRQFGVEFGNFDVYCVKPNKTDKFQTTSLNLLPGSFTPNDL 134          
BLAST of Ggra7559.t1 vs. uniprot
Match: A9BGT6 (Cytidine deaminase n=10 Tax=Petrotoga TaxID=28236 RepID=A9BGT6_PETMO)

HSP 1 Score: 148 bits (374), Expect = 2.980e-43
Identity = 71/127 (55.91%), Postives = 97/127 (76.38%), Query Frame = 0
Query:   19 LDQLMAEADKAKLKAYAPYSKFRVGAALLASDGTIYSGANVENSSYGLTVCAERTAVFHAASCGARSFRAIVVTTDIAESYVYPCGACRQVMSEFGNFDVYCLRSNGRVSRTTLHELIPYAFSPRDL 145
            +++L  EA KA+  AYAPYS F+VGA LL+ DG I+SG NVEN+SYGL++CAER A+F A + G R F+A++V  +  E+ V PCGACRQVM+EFG+FDVY   + G++ +T + EL+P AFSP+DL
Sbjct:    7 VEKLYEEAMKARENAYAPYSNFKVGACLLSDDGEIFSGCNVENASYGLSICAERNAIFSAVAKGKREFKAMLVVAE-GEAPVKPCGACRQVMAEFGDFDVYLANTKGKIEKTRVSELLPNAFSPKDL 132          
BLAST of Ggra7559.t1 vs. uniprot
Match: A0A328PKY3 (Cytidine deaminase n=1 Tax=Petrotoga sp. 9PW.55.5.1 TaxID=1308979 RepID=A0A328PKY3_9BACT)

HSP 1 Score: 145 bits (366), Expect = 5.530e-42
Identity = 69/129 (53.49%), Postives = 94/129 (72.87%), Query Frame = 0
Query:   19 LDQLMAEADKAKLKAYAPYSKFRVGAALLASDGTIYSGANVENSSYGLTVCAERTAVFHAASCGARSFRAIVVTTDIAESYVYPCGACRQVMSEFGNFDVYCLRSNGRVSRTTLHELIPYAFSPRDLSK 147
            +++L+ EA K + KAYAPYS F+VGA+LL  DG I++G NVEN+SYGL++CAER A+F A S G R F+A++V     E  V PCGACRQVM EFG FDVY   ++G++ +T + EL+P AF P +L +
Sbjct:    7 IEKLLEEAKKVREKAYAPYSNFKVGASLLTEDGKIFTGCNVENASYGLSLCAERNAIFSAVSKGERKFKALLVVAQ-GEGTVAPCGACRQVMREFGEFDVYLANTDGKIEKTKVSELLPKAFGPENLEE 134          
BLAST of Ggra7559.t1 vs. uniprot
Match: A0A2K1PEX7 (Cytidine deaminase n=3 Tax=Petrotoga TaxID=28236 RepID=A0A2K1PEX7_9BACT)

HSP 1 Score: 144 bits (364), Expect = 9.830e-42
Identity = 68/127 (53.54%), Postives = 95/127 (74.80%), Query Frame = 0
Query:   19 LDQLMAEADKAKLKAYAPYSKFRVGAALLASDGTIYSGANVENSSYGLTVCAERTAVFHAASCGARSFRAIVVTTDIAESYVYPCGACRQVMSEFGNFDVYCLRSNGRVSRTTLHELIPYAFSPRDL 145
            +++L  EA K +  AYAPYS F+VGA LL++DG I+SG NVEN+SYGL++CAER A+F A + G R F+A+++     E+ V PCGACRQVM+EFG+FDVY   + G++ +T + EL+P AF P+DL
Sbjct:    7 VEKLYEEAMKTRENAYAPYSNFKVGACLLSNDGEIFSGCNVENASYGLSICAERNAIFSAVAKGKREFKAMLIVAQ-GEAPVKPCGACRQVMAEFGDFDVYLANTKGKIEKTKVSELLPNAFGPKDL 132          
BLAST of Ggra7559.t1 vs. uniprot
Match: cytidine deaminase n=2 Tax=Pseudocrenilabrinae TaxID=318546 RepID=UPI00022AFFC3 (cytidine deaminase n=2 Tax=Pseudocrenilabrinae TaxID=318546 RepID=UPI00022AFFC3)

HSP 1 Score: 144 bits (364), Expect = 1.080e-41
Identity = 73/133 (54.89%), Postives = 99/133 (74.44%), Query Frame = 0
Query:   16 TDELDQLMAEADKAKLKAYAPYSKFRVGAALLASDGTIYSGANVENSSYGLTVCAERTAVFHAASCGARSFRAIVVTTDIAESYVYPCGACRQVMSEFGN-FDVYCLRSNGRVSRTTLHELIPYAFSPRDLSK 147
            TD++ +L+++  +A+ KAY PYS+F VGAA+L +DG I++G NVEN+SYGLTVCAERTA+  A   G R FRAI VT DI + +V PCGACRQV+ EFG+ + VY  + +G    T+L+EL+P AFSP  L+K
Sbjct:    2 TDQVKELVSKCLQARDKAYCPYSRFPVGAAVLTADGAIFTGCNVENASYGLTVCAERTAIQRAVVEGHRQFRAIAVTCDIKDRFVGPCGACRQVLLEFGSDWTVYLTKPDGSYKETSLNELLPLAFSPSHLAK 134          
The following BLAST results are available for this feature:
BLAST of Ggra7559.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IWR66.390e-9085.26Cytidine deaminase n=1 Tax=Gracilariopsis chorda T... [more]
R7QLF72.130e-8178.48Cytidine deaminase n=1 Tax=Chondrus crispus TaxID=... [more]
A0A7S0G0F34.180e-6264.47Cytidine deaminase n=1 Tax=Rhodosorus marinus TaxI... [more]
A0A1X6P7322.090e-5664.49Cytidine deaminase n=1 Tax=Porphyra umbilicalis Ta... [more]
hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644D8F63.410e-4456.06hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
F4QEH01.380e-4358.14Cytidine deaminase n=1 Tax=Cavenderia fasciculata ... [more]
A9BGT62.980e-4355.91Cytidine deaminase n=10 Tax=Petrotoga TaxID=28236 ... [more]
A0A328PKY35.530e-4253.49Cytidine deaminase n=1 Tax=Petrotoga sp. 9PW.55.5.... [more]
A0A2K1PEX79.830e-4253.54Cytidine deaminase n=3 Tax=Petrotoga TaxID=28236 R... [more]
cytidine deaminase n=2 Tax=Pseudocrenilabrinae TaxID=318546 RepID=UPI00022AFFC31.080e-4154.89cytidine deaminase n=2 Tax=Pseudocrenilabrinae Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006262Cytidine deaminase, homotetramericTIGRFAMTIGR01354TIGR01354coord: 20..145
e-value: 3.4E-43
score: 144.9
NoneNo IPR availableGENE3D3.40.140.10Cytidine Deaminase, domain 2coord: 6..148
e-value: 1.7E-52
score: 179.2
NoneNo IPR availablePANTHERPTHR11644CYTIDINE DEAMINASEcoord: 14..149
NoneNo IPR availablePANTHERPTHR11644:SF24CYTIDINE DEAMINASEcoord: 14..149
NoneNo IPR availableCDDcd01283cytidine_deaminasecoord: 23..132
e-value: 4.08795E-36
score: 118.983
IPR002125Cytidine and deoxycytidylate deaminase domainPFAMPF00383dCMP_cyt_deam_1coord: 20..120
e-value: 1.3E-15
score: 57.0
IPR002125Cytidine and deoxycytidylate deaminase domainPROSITEPS51747CYT_DCMP_DEAMINASES_2coord: 17..143
score: 28.102043
IPR016192APOBEC/CMP deaminase, zinc-bindingPROSITEPS00903CYT_DCMP_DEAMINASES_1coord: 69..110
IPR016193Cytidine deaminase-likeSUPERFAMILY53927Cytidine deaminase-likecoord: 17..146

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000866_piloncontigtig00000866_pilon:63304..63976 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7559.t1Ggra7559.t1Gracilaria gracilis GNS1m malemRNAtig00000866_pilon 63304..63976 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7559.t1 ID=Ggra7559.t1|Name=Ggra7559.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=157bp
MEGVAAETHTAPSISTDELDQLMAEADKAKLKAYAPYSKFRVGAALLASD
GTIYSGANVENSSYGLTVCAERTAVFHAASCGARSFRAIVVTTDIAESYV
YPCGACRQVMSEFGNFDVYCLRSNGRVSRTTLHELIPYAFSPRDLSKGQG
KAEEEE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006262Cyt_deam_tetra
IPR002125CMP_dCMP_dom
IPR016192APOBEC/CMP_deaminase_Zn-bd
IPR016193Cytidine_deaminase-like