Ggra755.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra755.t1
Unique NameGgra755.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length323
Homology
BLAST of Ggra755.t1 vs. uniprot
Match: A0A2V3IEF5 (tRNA-intron lyase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEF5_9FLOR)

HSP 1 Score: 217 bits (552), Expect = 4.930e-67
Identity = 110/187 (58.82%), Postives = 128/187 (68.45%), Query Frame = 0
Query:  142 MRQLMQLQ------ASSDDFDRSDVEHLQLTFTEAFYAAFVTKHIVILDMHTKEPLTARHHVWRLFCSRCERFPFMFVAYCRYRSAGWLPKSALKYGANWVLYPTKSYTHTHAPYCVVLQFSTSGEEAPIASSWISMQNRLRLVKNVAKNLVVTSVHAEKKVDFGSSISDTFDVVKVTELTIDRWLP 322
            MRQL+ LQ      A      R DVEHLQL   +AFY AFVT+ IVI D             WRLFC+RC RFP +FVAY RYR+AGWLPKS LKYG +WVLYPTK Y HTHAPYCVV  FS    +A + SSWI++QNRLRLV NVAK LV+  +H  + +D  +SIS TFD V++TELTIDRWLP
Sbjct:    1 MRQLLALQPAAAAAAGEAAQSRVDVEHLQLPLVDAFYLAFVTRQIVISDAAADAAAA-----WRLFCARCARFPLLFVAYARYRAAGWLPKSGLKYGVHWVLYPTKRYAHTHAPYCVVFHFSNRPNDARLDSSWIALQNRLRLVNNVAKTLVIARLHVAEPLDLAASISRTFDAVRLTELTIDRWLP 182          
BLAST of Ggra755.t1 vs. uniprot
Match: M2XJJ3 (tRNA-intron lyase n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XJJ3_GALSU)

HSP 1 Score: 121 bits (304), Expect = 3.190e-28
Identity = 100/340 (29.41%), Postives = 149/340 (43.82%), Query Frame = 0
Query:   24 SIHSLRVELYRRNLPTTGLRSELESRLRQACSTTTPHLSVPSSFSIAAPFSALHDAVTSNIPDPIPALLRHRSVWVCSDSFVAATWQRTS-CGKANLSRSAPSYNA----LVHSQHANWKGRAMRQLMQLQ-----------------ASSDDFDRSDV--------------EHLQLTFTEAFYAAFVTKHIVILDMHTK-EPLTARHHVWRLFCSRCERFPFMFVAYCRYRSAGWLPKSALKYGANWVLYPTKSYTHTHAPYCVVLQF--STSGEEAPIASSWISMQNRLRLVKNVAKNLVVTSVHAEKKVDFGSSIS----DTFDVVKVTELTIDRW 320
            S+  LR  L +  L   G + +L  RL  A ST     S+  +F  +   S +  A       P   +L H SVW+     +       S  GK +LSRS P +       +  + A  + +  RQ   L+                 +S  D    D+              EHLQL   EAFYA+F++K + I D       LT     +  FC     FP+    YC Y+  GW P S LKYG ++VLY     +H H+P+CV++      S  +  +  SWIS+QNRLRLVK VAK L++  VH +K       I     ++   ++++E+ ++RW
Sbjct:   10 SVPILRYRLCQLGLDYKGTKKDLVQRL-VAASTQDQDQSLEETFHASTGNSIVRGASKER---PCKGILIHNSVWITQREHMMELGSTLSGFGKGSLSRSVPVFGTEAPEALKGKVARQRTKLTRQRESLEIQVARLDSENSHRALVSSSEGDILAVDIGPLLSSPTKDNIFEEHLQLCLWEAFYASFISKQLNIFDKTDPITKLTDPDRTYAYFCRLIPHFPYYLAIYCYYKERGWSPHSGLKYGVDFVLYYGSVESHVHSPFCVLVDIHKDDSPGDCLLEKSWISLQNRLRLVKQVAKQLLL--VHVQKPKGLADEILFSRWESCLSLEISEMRVERW 343          
BLAST of Ggra755.t1 vs. uniprot
Match: A0A1X6PJ52 (tRNA-intron lyase n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PJ52_PORUM)

HSP 1 Score: 103 bits (257), Expect = 4.520e-21
Identity = 78/226 (34.51%), Postives = 104/226 (46.02%), Query Frame = 0
Query:  138 KGRAMRQLMQLQASSDDF---------DRSDVEHLQLTFTEAFYAAF--VTKHIVILDMHTKEPLTARHHV--------------WRLFCSRCE---RFPFMFVAYCRYRSAGWLPKSALKYGANWVLYPTKSYTHTHAPYCVVLQF--------STSGEE----APIASSWISMQNRLRLVKNVAKNLVVTSVHAEKKVDFGSSISDTFDVVK---VTELTIDRW 320
            KGRA+R L  L+ +S             R+ VEHL L   EA+YAA+      + ++ +       A                  W   C+R     RF   + AY  YR AGW P+S  KYG +WVLY   +  H HA +CVVL          S  GE     AP+ +SW+++QNRLRLVKNVAK L+ T+V           ++D    +    V EL IDRW
Sbjct:  252 KGRALRNLSSLEGASAAXXXXAVERAAQRTAVEHLALGLPEAYYAAYEAAPPRLRLVTLRGVAAAAAADXXXXXXXXXXXXXXXXWAACCARSPGGVRFAAAYAAYRFYRGAGWAPRSGAKYGVDWVLYKVGAARHAHASFCVVLSVAGLPDGGGSGGGEAGALGAPLDASWVAVQNRLRLVKNVAKTLLYTAVSDGGGALTPGGVADRAAFLARATVVELRIDRW 477          
BLAST of Ggra755.t1 vs. uniprot
Match: V4AW24 (tRNA-intron lyase n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4AW24_LOTGI)

HSP 1 Score: 85.5 bits (210), Expect = 1.090e-15
Identity = 47/167 (28.14%), Postives = 87/167 (52.10%), Query Frame = 0
Query:  161 EHLQLTFTEAFYAAFVTKHIVILDMHTKEPLTARHHVWRLFCSRCERFPFMFVAYCRYRSAGWLPKSALKYGANWVLYPTKSYTHTHAPYCVVLQFSTSGEEAPIAS------SWISMQNRLRLVKNVAKNLVVTSVHAEKKVDFGSSISDTFDVVKVTELTIDRWL 321
            E+LQL+F EAF+  +    +++ +      + +   +W+LFC++   F   ++ Y  +RS GW+PKS LK+G +++LY      + H  Y V++Q+   G   P++       SW S+    R+ ++V K +++  V   K +   +  SD     KV E+ + RW+
Sbjct:   82 EYLQLSFVEAFFLCYGLGCLIVQNSERNIDIKS---LWKLFCTKQRNFIPSYICYHYFRSKGWVPKSGLKFGCDYILYKVGPPFY-HGSYSVIIQYVEEGSLKPVSGYYQRKLSWRSLCGLNRITEHVGKEVLICYVIKPKSISDETFSSDFISHFKVKEIMLSRWV 244          
BLAST of Ggra755.t1 vs. uniprot
Match: A0A6J2VNC9 (tRNA-splicing endonuclease subunit Sen2 n=1 Tax=Chanos chanos TaxID=29144 RepID=A0A6J2VNC9_CHACN)

HSP 1 Score: 79.7 bits (195), Expect = 6.570e-13
Identity = 55/165 (33.33%), Postives = 84/165 (50.91%), Query Frame = 0
Query:  160 VEHLQLTFTEAFYAAFVTKHIVILDMHTKEPLTARHHVWRLFCSRCERFPFMFVAYCRYRSAGWLPKSALKYGANWVLYPTKSYTHTHAPYCVVLQFSTSGEEAPIAS--SWISMQNRLRLVKNVAKNLVVTSVHAEKKVDFGSSIS-DTFDVVKVTELTIDRWL 321
            +E+LQL+  EAF+  +    + I   H+ EPL     VW+LFCS    F   +V Y  +RS GW+PKS +KYG +++LY  K     HA Y VV++         +    SW S+    R+  NV+K L++  V     +   +  S +    +KV EL + RW+
Sbjct:  311 LEYLQLSLEEAFFLVYALGCLSI--HHSGEPLFISE-VWKLFCSVQANFESTYVVYHYFRSKGWVPKSGIKYGTDFILY-RKGPPFYHASYSVVVERVDDSLRGALLRPFSWRSLAALCRITGNVSKELMLCYVIVPSDMTTEAMSSPECLKRIKVQELIMSRWI 471          
BLAST of Ggra755.t1 vs. uniprot
Match: A0A2G4T9M0 (tRNA-splicing endonuclease subunit Sen2 n=5 Tax=Rhizopus TaxID=4842 RepID=A0A2G4T9M0_RHIZD)

HSP 1 Score: 77.4 bits (189), Expect = 1.300e-12
Identity = 62/225 (27.56%), Postives = 99/225 (44.00%), Query Frame = 0
Query:  115 GKANLSRSAPSYNALVHSQH-------ANWKGRAMRQLMQLQASSDDFDR------------SDVEHLQLTFTEAFYAAFVTKHIVILDMHTKEPLTARHHVWRLFCSRCERFPFMFVAYCRYRSAGWLPKSALKYGANWVLYPTKSYTHTHAPYCVVLQFSTSGEEAPIASSWISMQNRLRLVKNVAKNLVVTSVHAEKKVDFGSSISDTFDVVKVTELTIDRW 320
            GK +LSRS P++ +    QH          + +  R+  + QA  DD D+             D+E LQL   EA++  F  K + I +  +K+ L +    W  FC     F + +  Y  YRS GW+PKS +K+G ++VLY      + HA Y V++     G+      SW  +    R+   V K LV+  V   + +D         +  ++ E+   RW
Sbjct:   71 GKGSLSRSEPTWLSRTIEQHKLSLEDVTVERRKKRREKRRNQAIKDDQDKYQPDQLLDLVEHKDMETLQLDPCEAYFLIFALKALDIRN--SKQKLLSIEQCWTKFCQNDPTFHYTYAVYHYYRSLGWVPKSGIKFGVDFVLYKLGP-AYRHADYAVIIIPLQKGQPED-TKSWQWLLRLNRICTQVKKTLVLCYVTIPESID-------RIENYRIQEVVYRRW 284          
BLAST of Ggra755.t1 vs. uniprot
Match: tRNA-splicing endonuclease subunit Sen2-like isoform X1 n=2 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6E57A1 (tRNA-splicing endonuclease subunit Sen2-like isoform X1 n=2 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6E57A1)

HSP 1 Score: 75.9 bits (185), Expect = 3.860e-12
Identity = 58/220 (26.36%), Postives = 111/220 (50.45%), Query Frame = 0
Query:  110 QRTSCGKANLSRSAPSYN----ALVHSQHANWKGRAMRQLMQLQASSDDFDRSDVEHLQLTFTEAFYAAFVTKHIVILDMHTKEPLTARHHVWRLFC--SRCERFPFMFVAYCRYRSAGWLPKSALKYGANWVLYPTKSYTHTHAPYCVVLQFSTSGEEAPIASSWISMQNRLRLVKNVAKNLVVTSVHAEKKVDF-GSSISDTFDVVKVTELTIDRWLP 322
            ++ + G   LS+  P ++    +L +    N  G   +   +   SS    ++  E L L F EAF+ ++    +++ + + +  ++    +W+ FC  +   RFP  ++AY  +RS GW+ KS LKYG ++VLY      + H+ YCVV++   S +    + +W+ + +  R+ ++VAK+ ++  V   K  D    S   TF++    E+ + RW+P
Sbjct:   64 EKGNFGIGYLSKDIPEFSDKRRSLSNFDEINEDGECQQHCQETSLSS----KNQYETLYLMFEEAFFLSYGLGCLIVKESNKELSIS---EMWKKFCWLALDGRFPCKYIAYHYFRSKGWIVKSGLKYGTDFVLYKDGPAFY-HSTYCVVVR-EVSSDFNEQSLTWLELLSLNRVNEHVAKDTLLCYVMKNKDTDLLDPSCIPTFNI---QEVLLRRWIP 271          
BLAST of Ggra755.t1 vs. uniprot
Match: tRNA-splicing endonuclease subunit Sen2 isoform X1 n=2 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148AC21B (tRNA-splicing endonuclease subunit Sen2 isoform X1 n=2 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148AC21B)

HSP 1 Score: 76.6 bits (187), Expect = 7.870e-12
Identity = 50/166 (30.12%), Postives = 83/166 (50.00%), Query Frame = 0
Query:  161 EHLQLTFTEAFYAAFVTKHIVILDMHTKEPLTARHHVWRLFCSRCERFPFMFVAYCRYRSAGWLPKSALKYGANWVLYPTKSYTHTHAPYCVVLQF----STSGEEAPIASSWISMQNRLRLVKNVAKNLVVTSVHAEKKVDFGSSIS-DTFDVVKVTELTIDRWL 321
            E L L+  E+F+ A+    +  L ++  E L     +WR FC R  RF  ++VAY  +RS GW+PKS LK+G ++++Y  +     H  Y V+++         E+     SW  +    RL ++VAK L++  V     V+    +S +     KV E+ + RW+
Sbjct:  383 EFLHLSLEESFFLAYG---LGCLRVYENEKLLNLTDLWRAFCQRHNRFISLYVAYHYFRSKGWVPKSGLKFGTDFIIYK-EGPPFYHGSYSVIVKMVRDDDLKEEDNLPTLSWTQIAGLNRLTEHVAKQLLICYVIRPTHVNSDLMLSPNVISQFKVKEIVVSRWV 544          
BLAST of Ggra755.t1 vs. uniprot
Match: tRNA-splicing endonuclease subunit Sen2-like n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EB03E03 (tRNA-splicing endonuclease subunit Sen2-like n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EB03E03)

HSP 1 Score: 75.9 bits (185), Expect = 1.490e-11
Identity = 52/171 (30.41%), Postives = 87/171 (50.88%), Query Frame = 0
Query:  160 VEHLQLTFTEAFYAAFVTKHIVILDMHTKEPLTARHHVWRLFCSRCERFPFMFVAYCRYRSAGWLPKSALKYGANWVLYPTKSYTHTHAPYCVVLQF--------STSGEEAPIASSWISMQNRLRLVKNVAKNLVVTSVHAEKKVDFGSSISDT-FDVVKVTELTIDRWL 321
            VEHLQL+F E F+ ++    +V+ D   K+   +   +W+ FCS    F   ++AY  YRS GW+PK+ LK+G ++++Y  +     H  Y V+++                P+  SWIS+    R+ ++VAK L++  V   + V   S +S       KV E+ + RW+
Sbjct:  428 VEHLQLSFEETFFLSYGLGCLVVTD--EKQSNLSLSSLWQRFCSCRADFCPSYIAYHYYRSKGWVPKTGLKFGCDFIVYK-EGPPFYHGSYSVLVRLVDEETLTEHLGSTHRPL--SWISLAGLNRITEHVAKELLICYVIKPRGVTEESLMSPACIPQFKVQEVLVSRWV 593          
BLAST of Ggra755.t1 vs. uniprot
Match: LOW QUALITY PROTEIN: tRNA-splicing endonuclease subunit Sen2-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE5C6C3 (LOW QUALITY PROTEIN: tRNA-splicing endonuclease subunit Sen2-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE5C6C3)

HSP 1 Score: 74.3 bits (181), Expect = 4.890e-11
Identity = 53/171 (30.99%), Postives = 87/171 (50.88%), Query Frame = 0
Query:  160 VEHLQLTFTEAFYAAFVTKHIVILDMHTKEPLTARHHVWRLFCSRCERFPFMFVAYCRYRSAGWLPKSALKYGANWVLYPTKSYTHTHAPYCVVLQFSTSGEEAPIAS--------SWISMQNRLRLVKNVAKNLVVTSVHAEKKVDFGSSISDT-FDVVKVTELTIDRWL 321
            VEHL L+F E F+ ++    +V+ D   K+       +W+ FCS  + F   ++AY  YRS GW+PK+ LK+G ++++Y  +     H  Y V+++     EE  I          SWIS+    R+ ++VAK L++  V   + V   S +S       KV E+ + RW+
Sbjct:  441 VEHLLLSFEETFFLSYGLGCLVVTD--EKQKNLNLSSLWQRFCSSRDDFCANYIAYHYYRSKGWVPKTGLKFGCDFIVYK-EGPPFYHGSYSVLVRLVD--EETLIEHPEYTHRPLSWISLAGLNRITEHVAKELLMCYVIKPRGVSEESLMSPACIPQFKVQEILVTRWV 606          
The following BLAST results are available for this feature:
BLAST of Ggra755.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IEF54.930e-6758.82tRNA-intron lyase n=1 Tax=Gracilariopsis chorda Ta... [more]
M2XJJ33.190e-2829.41tRNA-intron lyase n=1 Tax=Galdieria sulphuraria Ta... [more]
A0A1X6PJ524.520e-2134.51tRNA-intron lyase n=1 Tax=Porphyra umbilicalis Tax... [more]
V4AW241.090e-1528.14tRNA-intron lyase n=1 Tax=Lottia gigantea TaxID=22... [more]
A0A6J2VNC96.570e-1333.33tRNA-splicing endonuclease subunit Sen2 n=1 Tax=Ch... [more]
A0A2G4T9M01.300e-1227.56tRNA-splicing endonuclease subunit Sen2 n=5 Tax=Rh... [more]
tRNA-splicing endonuclease subunit Sen2-like isoform X1 n=2 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6E57A13.860e-1226.36tRNA-splicing endonuclease subunit Sen2-like isofo... [more]
tRNA-splicing endonuclease subunit Sen2 isoform X1 n=2 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148AC21B7.870e-1230.12tRNA-splicing endonuclease subunit Sen2 isoform X1... [more]
tRNA-splicing endonuclease subunit Sen2-like n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EB03E031.490e-1130.41tRNA-splicing endonuclease subunit Sen2-like n=1 T... [more]
LOW QUALITY PROTEIN: tRNA-splicing endonuclease subunit Sen2-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE5C6C34.890e-1130.99LOW QUALITY PROTEIN: tRNA-splicing endonuclease su... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003034SAP domainSMARTSM00513sap_9coord: 20..54
e-value: 6.0E-4
score: 29.1
IPR003034SAP domainPROSITEPS50800SAPcoord: 20..54
score: 9.266973
IPR011856tRNA endonuclease-like domain superfamilyGENE3D3.40.1350.10coord: 205..303
e-value: 4.1E-17
score: 64.0
IPR006677tRNA intron endonuclease, catalytic domain-likePFAMPF01974tRNA_int_endocoord: 210..299
e-value: 2.9E-14
score: 52.9
IPR036361SAP domain superfamilyGENE3D1.10.720.30SAP domaincoord: 5..66
e-value: 2.6E-6
score: 28.9
IPR006676tRNA-splicing endonucleasePANTHERPTHR21227TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2coord: 59..322
IPR036167tRNA intron endonuclease, catalytic domain-like superfamilySUPERFAMILY53032tRNA-intron endonuclease catalytic domain-likecoord: 207..297

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000164_piloncontigtig00000164_pilon:222865..223833 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra755.t1Ggra755.t1Gracilaria gracilis GNS1m malemRNAtig00000164_pilon 222865..223833 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra755.t1 ID=Ggra755.t1|Name=Ggra755.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=323bp
MDPRPRKRRRPRADNHPPPISALSIHSLRVELYRRNLPTTGLRSELESRL
RQACSTTTPHLSVPSSFSIAAPFSALHDAVTSNIPDPIPALLRHRSVWVC
SDSFVAATWQRTSCGKANLSRSAPSYNALVHSQHANWKGRAMRQLMQLQA
SSDDFDRSDVEHLQLTFTEAFYAAFVTKHIVILDMHTKEPLTARHHVWRL
FCSRCERFPFMFVAYCRYRSAGWLPKSALKYGANWVLYPTKSYTHTHAPY
CVVLQFSTSGEEAPIASSWISMQNRLRLVKNVAKNLVVTSVHAEKKVDFG
SSISDTFDVVKVTELTIDRWLP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003034SAP_dom
IPR011856tRNA_endonuc-like_dom_sf
IPR006677tRNA_intron_Endonuc_cat-like
IPR036361SAP_dom_sf
IPR006676tRNA_splic
IPR036167tRNA_intron_Endo_cat-like_sf