Ggra7529.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7529.t1
Unique NameGgra7529.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length186
Homology
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BLAST of Ggra7529.t1 vs. uniprot
Match: A0A2V3IEU0 (RING-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEU0_9FLOR)

HSP 1 Score: 113 bits (282), Expect = 9.340e-28
Identity = 49/108 (45.37%), Postives = 72/108 (66.67%), Query Frame = 0 
Query:    1 MVHIGHPRDCAICLEKLENHVSQLDCKHVFHFICIQKLVPEENDQQRQV---LVTQNGDDEVEFDYPQAKVFPCCKRPIVVENIKHWVDYENQKDRGKPPQMSVQEYQ 105
            MVH+GHP++C+ICLE L  +V QLDC HVFH+ CI ++ P+ N ++  +   L  +NG +E+E  YP     P C++PI  ++IK W+DY N K R +P  MS +EY+
Sbjct:    1 MVHLGHPKECSICLENLAGNVVQLDCYHVFHYDCISRMFPKHNQERGTIYRMLRDRNGREELEVSYPLNNCCPNCQKPINTKDIKQWLDYVNCKKRSRPEGMSEEEYE 108
The following BLAST results are available for this feature:
BLAST of Ggra7529.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IEU09.340e-2845.37RING-type domain-containing protein n=1 Tax=Gracil... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 10..72
e-value: 0.0055
score: 25.9
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 9..39
e-value: 6.5E-7
score: 29.6
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 6..92
e-value: 9.6E-10
score: 39.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 129..175
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 89..185
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 9..39

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000102_piloncontigtig00000102_pilon:292857..293414 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7529.t1Ggra7529.t1Gracilaria gracilis GNS1m malemRNAtig00000102_pilon 292857..293414 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7529.t1 ID=Ggra7529.t1|Name=Ggra7529.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=186bp
MVHIGHPRDCAICLEKLENHVSQLDCKHVFHFICIQKLVPEENDQQRQVL
VTQNGDDEVEFDYPQAKVFPCCKRPIVVENIKHWVDYENQKDRGKPPQMS
VQEYQKRIKKNRRTMQRRLRREARKKASETNQNTSSSASSNVPLLQTTPS
SSGTGTRTRRLKSSRSLSTVPAINPLDSRRNPARG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD