Ggra7514.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7514.t1
Unique NameGgra7514.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length214
Homology
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BLAST of Ggra7514.t1 vs. uniprot
Match: A0A2V3J6H0 (Sen15 domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6H0_9FLOR)

HSP 1 Score: 168 bits (425), Expect = 5.010e-49
Identity = 96/196 (48.98%), Postives = 124/196 (63.27%), Query Frame = 0 
Query:   16 PKALHAYQSFIRQHELRDDARAETLYQVYHDLQRIRKWSNLRVSHRAMRPYIAGSAAATFDSVHAAAADGDGGDQRDDEGRRDGAQSGDASVRDRTQAVVPVGADEWLTGGEMYQLCAQCVHPESGEALRCVTVAIVDDDSTTAYYRMTNRWEEIVHPQWKSKKASTEPTGGGAARGDAQDGMQSGEERLSTASDS 211
            PK + ++ SF+  + L+D  +A+ LYQV+ DL+ IRKW+ LRVS RA RPY+AGSAAA FDSV+         D+  D+G             DRTQ VVPV A E L+  ++  LC +CVHPE+GE LRC+T+AIVDDDSTTAYYR+ + WEEIVHPQWK KK      G G    D  D ++  E   ++ SDS
Sbjct:   37 PKPIQSFMSFLISNGLQDCDQAQVLYQVFQDLRLIRKWTGLRVSQRASRPYLAGSAAAAFDSVYK--------DKDMDKGE------------DRTQVVVPVSAWEELSALDLQALCRECVHPETGEQLRCMTLAIVDDDSTTAYYRIFSTWEEIVHPQWKMKKKHKTEGGIGTEERDQNDVVEESESSSNSDSDS 212
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BLAST of Ggra7514.t1 vs. uniprot
Match: R7QIT3 (Sen15 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QIT3_CHOCR)

HSP 1 Score: 90.1 bits (222), Expect = 6.190e-20
Identity = 48/100 (48.00%), Postives = 62/100 (62.00%), Query Frame = 0 
Query:  115 VPVGADEWLTGGEMYQLCAQCVHPESGEALRCVTVAIVDDDSTTAYYRMTNRWEEIVHPQWKSKKAST--EPTGGGAARGDAQDGMQSGEERLSTASDSD 212
            +P+   E L+  ++ +LC  C+HPE+G+ LRC+TVAIVDDDSTTAYYR+ + + EIVHPQWK KK  T  E    G         MQ+  E  S  SD D
Sbjct:    1 MPMSIQEKLSPFKLKELCRACIHPETGKKLRCMTVAIVDDDSTTAYYRIFDSFAEIVHPQWKQKKKRTKNEDVANGTEEKIGDANMQANSESESDESDYD 100
The following BLAST results are available for this feature:
BLAST of Ggra7514.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J6H05.010e-4948.98Sen15 domain-containing protein n=1 Tax=Gracilario... [more]
R7QIT36.190e-2048.00Sen15 domain-containing protein n=1 Tax=Chondrus c... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011856tRNA endonuclease-like domain superfamilyGENE3D3.40.1350.10coord: 20..165
e-value: 7.6E-12
score: 47.2
IPR018593tRNA-splicing endonuclease subunit Sen15PFAMPF09631Sen15coord: 42..165
e-value: 7.5E-12
score: 45.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..104
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..112
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 175..213
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..213
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..13
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
IPR036167tRNA intron endonuclease, catalytic domain-like superfamilySUPERFAMILY53032tRNA-intron endonuclease catalytic domain-likecoord: 19..164

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000102_piloncontigtig00000102_pilon:254494..255135 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7514.t1Ggra7514.t1Gracilaria gracilis GNS1m malemRNAtig00000102_pilon 254494..255135 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7514.t1 ID=Ggra7514.t1|Name=Ggra7514.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=214bp
MKRSTSAGAALQAPAPKALHAYQSFIRQHELRDDARAETLYQVYHDLQRI
RKWSNLRVSHRAMRPYIAGSAAATFDSVHAAAADGDGGDQRDDEGRRDGA
QSGDASVRDRTQAVVPVGADEWLTGGEMYQLCAQCVHPESGEALRCVTVA
IVDDDSTTAYYRMTNRWEEIVHPQWKSKKASTEPTGGGAARGDAQDGMQS
GEERLSTASDSDA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011856tRNA_endonuc-like_dom_sf
IPR018593tRNA-endonuc_su_Sen15
IPR036167tRNA_intron_Endo_cat-like_sf