Ggra7507.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7507.t1
Unique NameGgra7507.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length839
Homology
BLAST of Ggra7507.t1 vs. uniprot
Match: A0A2V3IH58 (NB-ARC domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IH58_9FLOR)

HSP 1 Score: 114 bits (286), Expect = 3.010e-22
Identity = 75/210 (35.71%), Postives = 105/210 (50.00%), Query Frame = 0
Query:  318 IEKLETTIA---KVVERNDIVQDNIELLHRLKCFAARLSWNFVNSNPYEAWFQLYARLVASAKACDVTRRFVDEIERCAPRPWVKASAGFLQPAGGPGVEVINSPG--QVLCVSQGEGFVCSLWRSSGETGVMYYHMRKGALR----KLNFVPAGEQIG---DDSFFRRLVQ-------RTRCAVMSEDLRTVATGHEDGSIAIWNGETG 508
            I ++E  +A   KV E++   +  I    +L   AARLS+  VN N YEAWFQ+Y R+V  AK C+ T+ F+ EIE  APRPWVK S G L+ AGG   E +       +LC+S G G V  LW   G   V  Y+   G+ +     LN +     +G   D+S  +R             C   S+D + V  G+ DG I + N ++G
Sbjct:  666 ISRVEQDLAIGRKVSEKDKSNETAIGRYLKLVGSAARLSFAAVNENAYEAWFQMYGRMVWYAKHCERTQIFLSEIEEHAPRPWVKPSVGILEEAGGAASETVQIGNWYHILCISHGGGVVSILWTDGGHAYVTEYYKIDGSQKVQRLDLNDLADASSLGHHADNSDGQRSSSTMSISCTECTCGAFSDDQKRVVIGYSDGRIVVRNADSG 875          
BLAST of Ggra7507.t1 vs. uniprot
Match: A0A2V3IH69 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IH69_9FLOR)

HSP 1 Score: 105 bits (262), Expect = 1.520e-20
Identity = 62/177 (35.03%), Postives = 88/177 (49.72%), Query Frame = 0
Query:  344 RLKCFAARLSWNFVNSNPYEAWFQLYARLVASAKACDVTRRFVDEIERCAPRPWVKASAGFLQPAGGPGVEVIN---SPGQVLCVSQGEGFVCSLWRSSGETGVMYYHMRKGALRKL----NFVPAGEQIGDDSFFRR-----LVQRTRCAVMSEDLRTVATGHEDGSIAIWNGETG 508
            RL   A R+S  FV  N YEAWFQ+Y R++  A+ C+ TRR   ++E CAPRPWVK S G L  AGGP  E +    S  +++ +  G   +  LW      G +  + R    RK     + V   E  G      R     L +  RC   S +L+ + TGH DG + +W+ ++G
Sbjct:   79 RLIGSAVRMSCGFVVENAYEAWFQMYGRVMWYAEQCERTRRLTCKVEECAPRPWVKPSVGVLNEAGGPVSESLRIGESCRKIVDICHGGDVIRVLWTDGNRVGFVTEYNRIHGNRKTYKLGSAVTESELSGGRGSSGRNNVLPLSRDFRCGAFSGNLKKLVTGHHDGRVVVWDIDSG 255          
BLAST of Ggra7507.t1 vs. uniprot
Match: A0A2V3J3W2 (GATA-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3W2_9FLOR)

HSP 1 Score: 101 bits (251), Expect = 2.880e-20
Identity = 51/71 (71.83%), Postives = 55/71 (77.46%), Query Frame = 0
Query:   99 GWCGASHTTQWRIGPSGGSLRMSTLCNACGINYRRTLRKLRGGERALDLDALAAQQGTALSIGKALKRQRK 169
            GWCG   T+QWR+GP+ GSL M TLCNACGINYRR L+K   G   LDLDALA QQGT LSI KALKRQRK
Sbjct:   56 GWCGRCQTSQWRVGPTTGSLAMGTLCNACGINYRRALQKAPNG--MLDLDALAQQQGTRLSIQKALKRQRK 124          
BLAST of Ggra7507.t1 vs. uniprot
Match: A0A2V3IQ74 (Vegetative incompatibility protein HET-E-1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQ74_9FLOR)

HSP 1 Score: 107 bits (266), Expect = 5.310e-20
Identity = 66/179 (36.87%), Postives = 91/179 (50.84%), Query Frame = 0
Query:  349 AARLSWNFVNSNPYEAWFQLYARLVASAKACDVTRRFVDEIERCAPRPWVKASAGFLQPAGGPGVEVINSPGQVLCVSQGEGFVCSLWRSS--GET----GVMYYHMRKGALRKLNFVPAGEQ------IGDDSFFRRLVQRTRCAVMSEDLRTVATGHEDGSIAIWNGETGRLVRVLK 515
            AAR+S   V  NP E WFQL+ RL+  A  C  T++FV+EIE+CAPRPWVKAS G L+ A     E+I  PG V+ +S  E      W+ +  G+     GV  +    G      FV   E       +G ++F             + D R+V T H +G IA WN +TG + RV++
Sbjct:  614 AARMSCTTVVKNPREVWFQLHGRLLWHATKCKQTKKFVEEIEKCAPRPWVKASLGILE-APSDAEEIIRVPGYVMSISMEEDDTWIFWKRATFGDDDKAIGVSKHTRTSGVCEHHPFVMKEEDKAWLLDVGCEAF-----------ATTGDRRSVVTAHRNGRIATWNRDTGEMERVVE 780          
BLAST of Ggra7507.t1 vs. uniprot
Match: A0A2V3IBV0 (Vegetative incompatibility protein HET-E-1 n=6 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IBV0_9FLOR)

HSP 1 Score: 105 bits (262), Expect = 1.820e-19
Identity = 60/166 (36.14%), Postives = 82/166 (49.40%), Query Frame = 0
Query:  349 AARLSWNFVNSNPYEAWFQLYARLVASAKACDVTRRFVDEIERCAPRPWVKASAGFLQPAGGPGVEVINSPGQVLCVSQGEGFVCSLWRSSGETGVMYYHMRKGALRKLNFVPAGEQIGDDSFFRRLVQRTRCAVMSE--DLRTVATGHEDGSIAIWNGETGRLVR 512
            AARL+   V +NP E WFQL+ RL+  A  C+ T++FV+EIE+CAPRPWVK S G L+ A G   E+I  PG    +   +      WRS G  GV  +    G       V   E        +  +    C   ++  D R+  T H +G I  WN +TG + R
Sbjct:  614 AARLAHTTVATNPREVWFQLHGRLLLHATKCEQTKKFVEEIEKCAPRPWVKGSLGILE-APGAAEEIIKHPGIATSIRVEDDETWIFWRSDGGMGVSKHTRTSGVCDHHPLVMKEED-------KPRLLDVDCETFAKMGDRRSFVTAHSNGRIVTWNRDTGEMER 771          
BLAST of Ggra7507.t1 vs. uniprot
Match: A0A2V3IKW8 (Vegetative incompatibility protein HET-E-1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IKW8_9FLOR)

HSP 1 Score: 99.8 bits (247), Expect = 1.290e-17
Identity = 63/185 (34.05%), Postives = 92/185 (49.73%), Query Frame = 0
Query:  337 DNIELLHRLKCF--AARLSWNFVNSNPYEAWFQLYARLVASAKACDVTRRFVDEIERCAPRPWVKASAGFLQPAGGPGVEVINSP--GQVLCVSQGEGFVCSLW----RSSGETGVMYYHMRKGALRKLNFVPAGEQIGD-DSFFRRLV----QRTRCAVMSEDLRTVATGHEDGSIAIWNGETG 508
            +  EL+  L+    AAR+S+  V  N YEAWFQ+Y R++  A+ C+ TRRF  E+E CAPRPWVK S G L  AGGP  E   +     +L +      +  LW    RS   T     H  +      + V   +  G   S  R  V    +  RC   S +L+ + +GH+DG + +W+ ++G
Sbjct:  619 EEAELVRYLRLIGSAARMSFIHVVENAYEAWFQMYGRVIWHARQCERTRRFACEVEECAPRPWVKPSVGVLNEAGGPMTESFRTDDFSSILDLCHCGDVIRVLWVPLYRSLFVTEYNRIHGNRKTYELGSAVTESKLYGGRGSSGRNNVLPWSRGCRCGAFSGNLKNLVSGHDDGRVVVWDIDSG 803          
BLAST of Ggra7507.t1 vs. uniprot
Match: A0A2V3IDG2 (Vegetative incompatibility protein HET-E-1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IDG2_9FLOR)

HSP 1 Score: 86.7 bits (213), Expect = 1.020e-13
Identity = 53/177 (29.94%), Postives = 91/177 (51.41%), Query Frame = 0
Query:  337 DNIELLHRLKCFAARLSWNFVNSNPYEAWFQLYARLVASAKACDVTRRFVDEIERCAPRPWVKASAGFLQPAGGPGVEVINSPGQV--LCVSQGEGFVCSLWRSSGETGVMYYHMRKGALRKLNFVPAGEQIGDDSFFRRLVQRTRCAVMSEDLRTVATGHEDGSIAIWNGETGRLV 511
            ++++   R+   AARLS + V  NP+EA+FQLY RLV+ A  C+VT++FVDE+E  A +PW K S GFL  AG    +     G+   + +S  E  V ++   + E  +  Y  + G+LR ++     + +                 M+ D   VA   +DG+++ +  ++G+ +
Sbjct:   46 EDVKTSLRIVAEAARLSVHAVTRNPHEAYFQLYGRLVSYASKCEVTKKFVDELEIVAEKPWAKPSVGFLTAAGEATRDGFRLDGRATAMAISDSELVVGNM--KNDEAKITVYDRKFGSLRTISCGSNNQLLS----------------MTNDGTLVAVVDQDGNVSAFESKSGKQI 204          
BLAST of Ggra7507.t1 vs. uniprot
Match: A0A2V3IEZ2 (GATA-type domain-containing protein n=2 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEZ2_9FLOR)

HSP 1 Score: 77.4 bits (189), Expect = 3.000e-12
Identity = 41/71 (57.75%), Postives = 45/71 (63.38%), Query Frame = 0
Query:   99 GWCGASHTTQWRIGPSGGSLRMSTLCNACGINYRRTLRKLRGGERALDLDALAAQQGTALSIGKALKRQRK 169
            GWC    T+QWR+G + GS  M TLCNACGINYRRT RK+      LDLD LA      LSI K  KRQRK
Sbjct:   49 GWCNTQTTSQWRVGCTTGSEAMKTLCNACGINYRRTQRKVPN--LVLDLDVLAQNHSKRLSILKEFKRQRK 117          
BLAST of Ggra7507.t1 vs. uniprot
Match: A0A2V3IKX0 (Vegetative incompatibility protein HET-E-1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IKX0_9FLOR)

HSP 1 Score: 81.6 bits (200), Expect = 4.840e-12
Identity = 54/186 (29.03%), Postives = 84/186 (45.16%), Query Frame = 0
Query:  327 KVVERNDIVQDNIELLHRLKCF--AARLSWNFVNSNPYEAWFQLYARLVASAKACDVTRRFVDEIERCAPRPWVKASAGFLQPAGGPGVEVINSPGQ--VLCVSQGEGFVCSLWRSSGETGVMYYHMRKGALRKLNFVPAGEQIGDDSFFRRLVQRTRCAVMSEDLRTVATGHEDGSIAIWNGETG 508
            +V ERN     + EL+  L+    AA +S  ++    YEAWFQ+Y R++  A+ C+ TRRF  EIE  APRPW+K S   L  A G   +V        +L +        +LW  +    V           ++   P        S    +   + C   S +L+ + TGH DG + +W+ ++G
Sbjct:  622 QVAERNG--AGDAELIRYLRLIGNAAGMSSKYLVETTYEAWFQIYGRMIWYAEHCERTRRFTCEIEEHAPRPWIKPSIAMLDDAAGVFQDVSRREENFDILDICHKGDVTSTLW--TNRDTVCSVTKCNRTTNEITPHPLHSDRNSSSKKPPMSHGSTCGAFSGNLKKLVTGHRDGHMVVWDIDSG 803          
BLAST of Ggra7507.t1 vs. uniprot
Match: R7QG51 (WD40-repeat containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QG51_CHOCR)

HSP 1 Score: 74.3 bits (181), Expect = 7.560e-10
Identity = 62/207 (29.95%), Postives = 90/207 (43.48%), Query Frame = 0
Query:  349 AARLSWNFVNSNPYEAWFQLYARLVASAKACDVTRRFVDEIERCAPRPWVKASAGFLQPAGGPGVEVINSPG------QVLCVSQGEGFVCSLWRSS-------------------GET-------GVMYYHMRK--GALRKLNFVPAGEQIGDDSFFRRLVQRTRCAVMSEDLRTVATGHEDGSIAIWNGETGRLVRVLKGHTDRV 521
            AARLS  F   N    +FQLY R+   A+     R+ ++EIER APRPWV+  +  +  A G  VE I  P       QV   S+GE + C +  S                    GE+       GV+    RK  G LR    +  G    + S  +  V R  C+   E    V  G++DG++ +W+    +++R  +GH  RV
Sbjct:  391 AARLSVPFCGENNAGIYFQLYGRVKHKARDSGCVRKILEEIERYAPRPWVRPVSECVARADGTLVEHIVLPYFGTQEIQVGIDSRGEVYGCQVEESGAKVTVFTQSAEETKMVRLEGESETESQGAGVLEASRRKRGGPLRACFRMCIGSVKSEVSEEKPSVTRATCSTFCERKGYVVMGYDDGTLRLWSMSEKKVLRSFRGHRSRV 597          
The following BLAST results are available for this feature:
BLAST of Ggra7507.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A2V3IH583.010e-2235.71NB-ARC domain-containing protein n=1 Tax=Gracilari... [more]
A0A2V3IH691.520e-2035.03Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J3W22.880e-2071.83GATA-type domain-containing protein n=1 Tax=Gracil... [more]
A0A2V3IQ745.310e-2036.87Vegetative incompatibility protein HET-E-1 n=1 Tax... [more]
A0A2V3IBV01.820e-1936.14Vegetative incompatibility protein HET-E-1 n=6 Tax... [more]
A0A2V3IKW81.290e-1734.05Vegetative incompatibility protein HET-E-1 n=1 Tax... [more]
A0A2V3IDG21.020e-1329.94Vegetative incompatibility protein HET-E-1 n=1 Tax... [more]
A0A2V3IEZ23.000e-1257.75GATA-type domain-containing protein n=2 Tax=Gracil... [more]
A0A2V3IKX04.840e-1229.03Vegetative incompatibility protein HET-E-1 n=1 Tax... [more]
R7QG517.560e-1029.95WD40-repeat containing protein n=1 Tax=Chondrus cr... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 318..338
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..70
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 11..25
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..62
NoneNo IPR availablePANTHERPTHR42968:SF10WD REPEAT-CONTAINING PROTEIN WDR-5.2-RELATEDcoord: 55..773
NoneNo IPR availablePANTHERPTHR42968WD REPEAT-CONTAININGcoord: 55..773
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 556..589
score: 8.57106
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 690..727
score: 13.870123
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 514..547
score: 12.182859
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 647..684
score: 13.131947
NoneNo IPR availableCDDcd00200WD40coord: 487..722
e-value: 6.02482E-54
score: 186.772
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 93..135
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 666..680
score: 43.86
coord: 709..723
score: 39.92
coord: 533..547
score: 39.92
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 507..546
e-value: 5.7E-10
score: 49.1
coord: 549..589
e-value: 9.2E-6
score: 35.2
coord: 597..636
e-value: 0.092
score: 21.9
coord: 683..722
e-value: 2.1E-9
score: 47.3
coord: 468..504
e-value: 6.4
score: 11.9
coord: 640..679
e-value: 7.4E-9
score: 45.4
IPR001680WD40 repeatPFAMPF00400WD40coord: 556..589
e-value: 1.6E-6
score: 28.7
coord: 645..679
e-value: 8.2E-8
score: 32.8
coord: 690..722
e-value: 4.7E-8
score: 33.6
coord: 508..546
e-value: 8.4E-6
score: 26.4
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 690..731
score: 18.395145
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 604..636
score: 9.505904
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 514..555
score: 14.919653
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 485..513
score: 8.603614
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 647..688
score: 16.85791
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 556..589
score: 10.174269
IPR000679Zinc finger, GATA-typeSMARTSM00401GATA_3coord: 92..152
e-value: 2.2E-4
score: 23.1
IPR000679Zinc finger, GATA-typePFAMPF00320GATAcoord: 98..134
e-value: 1.4E-7
score: 31.0
IPR000679Zinc finger, GATA-typePROSITEPS50114GATA_ZN_FINGER_2coord: 92..132
score: 9.261926
IPR000679Zinc finger, GATA-typeCDDcd00202ZnF_GATAcoord: 101..143
e-value: 7.76907E-7
score: 44.671
IPR013088Zinc finger, NHR/GATA-typeGENE3D3.30.50.10coord: 94..175
e-value: 1.4E-9
score: 39.8
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 597..808
e-value: 2.3E-39
score: 137.1
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 411..591
e-value: 1.8E-32
score: 114.5
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 709..723
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 666..680
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 533..547
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 478..777

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000102_piloncontigtig00000102_pilon:227769..234669 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7507.t1Ggra7507.t1Gracilaria gracilis GNS1m malemRNAtig00000102_pilon 227769..234669 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7507.t1 ID=Ggra7507.t1|Name=Ggra7507.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=839bp
MSQLHTPSSSSLPLAPPPPMTPSMTPSMTPSMTPSMTPSMTPPMTPPMTP
PMKPPMTMTRAPTPHPPAATARGARACGGAPASAAAAAAAALSALRACGW
CGASHTTQWRIGPSGGSLRMSTLCNACGINYRRTLRKLRGGERALDLDAL
AAQQGTALSIGKALKRQRKGLARVHALKRLRRDARVDVRALLCADAAAAV
KRRAAAASAAASAAAAAAAAAAAVAAAAGGAQCACAQTGCMDARPTCTYD
DDVRAAATSATTYALAERNVAVVNLGNGLNTCDQQNKLCSSLTALFAIDE
PRTTMEFALTFSELLPVIEKLETTIAKVVERNDIVQDNIELLHRLKCFAA
RLSWNFVNSNPYEAWFQLYARLVASAKACDVTRRFVDEIERCAPRPWVKA
SAGFLQPAGGPGVEVINSPGQVLCVSQGEGFVCSLWRSSGETGVMYYHMR
KGALRKLNFVPAGEQIGDDSFFRRLVQRTRCAVMSEDLRTVATGHEDGSI
AIWNGETGRLVRVLKGHTDRVNCMLFTANDTRIVSGSKDATTRVWDVLSG
SSRGLYGEHKSSVTCVAASRDGTRVASGASKDGAIRVWDEGLVDVLSGQA
VGYLVGRCRNMFSMAMNVDGTKLVCGSWDNRVQVWDTVGTTGIEHDLSGH
QNSVECVIMSVDGTRIVSGSVDGTVRVWDARSGEAIGQAFVGHTSSVTCV
SISDDGTRIVSGSEDETVRVWDTRSAEALETGTKRASPVIRVGVDKRCSV
VVAYGEGCGGMGWLWDVNRGECVMNSSDDAWRYMVDDLDLHWSACGRRTR
NLTDRSGGVVLATCEGDVRCFGEVSFSDRFSAFCKIER*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR000679Znf_GATA
IPR013088Znf_NHR/GATA
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR019775WD40_repeat_CS
IPR036322WD40_repeat_dom_sf