Ggra7503.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7503.t1
Unique NameGgra7503.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length230
Homology
BLAST of Ggra7503.t1 vs. uniprot
Match: A0A2V3IQ31 (Tic20 family protein Ycf60 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQ31_9FLOR)

HSP 1 Score: 263 bits (671), Expect = 1.050e-86
Identity = 130/168 (77.38%), Postives = 149/168 (88.69%), Query Frame = 0
Query:   62 MRWSPSGGGGGDVPPVERALSTLPYLIPLLDSLSFGTFVFRRVPLLANVLLFPLLPLYNVYRGVPFLAFGVFLLLFIFVVRNVSVSRFVRFNTYQALILDIALILPQLFQGVRLGAAIPTTVVEICTTAVFYAVMMAVSYALVMNVQGKLPDEIPAVSDSVKQQLGPY 229
            MRWS + G G  +PP +R LS LPYLIPLLDSL+FG +VF++VPLL+ +LL PLLPLYN+YRG+PFLAFGVFLLLF+ VVRN++VSRF+RFNTYQALILDIALI PQLFQGV L AAIP +V EICTTAVFYA+MMAVSYA VMN QGKLPDEIPA+SDSVKQQLGP+
Sbjct:    1 MRWSGNRGNGSSIPPQDRILSILPYLIPLLDSLTFGKYVFQKVPLLSQILLVPLLPLYNIYRGIPFLAFGVFLLLFVLVVRNINVSRFIRFNTYQALILDIALIFPQLFQGVNLSAAIPASVTEICTTAVFYAIMMAVSYAAVMNAQGKLPDEIPALSDSVKQQLGPF 168          
BLAST of Ggra7503.t1 vs. uniprot
Match: A0A5J4YN77 (Tic20 family protein Ycf60 n=2 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YN77_PORPP)

HSP 1 Score: 173 bits (439), Expect = 1.590e-50
Identity = 90/162 (55.56%), Postives = 116/162 (71.60%), Query Frame = 0
Query:   68 GGGGGDVPPVERALSTLPYLIPLLDSLSFGTFVFRRVPLLANVLLFPLLPLYNVYRGVPFLAFGVFLLLFIFVVRNVSVSRFVRFNTYQALILDIALILPQLFQGVRLGAAIPTTVVEICTTAVFYAVMMAVSYALVMNVQGKLPDEIPAVSDSVKQQLGPY 229
            G GGG   P++R L TLPYL+PLLDSL +G +VF +VP  + V+L PL+PL  VYRG PFLAFG+FL LFI VVRN +V RF+RFNT QA++LDI  I+P LF G  LG+  P  +VE     VFY ++  V YA + N+QG+ PD+IP +S SV QQ+GP+
Sbjct:   83 GRGGGKPGPIDRVLGTLPYLVPLLDSLVYGKYVFEKVPY-STVVLGPLVPLLEVYRGTPFLAFGIFLALFILVVRNQNVPRFIRFNTQQAILLDILTIIPNLFNG--LGSRAPAVIVEGVNNTVFYGLVACVIYATISNLQGEYPDKIPGISASVSQQIGPF 241          
BLAST of Ggra7503.t1 vs. uniprot
Match: A0A1X6NJR3 (Tic20 family protein Ycf60 (Fragment) n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NJR3_PORUM)

HSP 1 Score: 157 bits (397), Expect = 2.120e-45
Identity = 75/148 (50.68%), Postives = 108/148 (72.97%), Query Frame = 0
Query:   82 STLPYLIPLLDSLSFGTFVFRRVPLLANVLLFPLLPLYNVYRGVPFLAFGVFLLLFIFVVRNVSVSRFVRFNTYQALILDIALILPQLFQGVRLGAAIPTTVVEICTTAVFYAVMMAVSYALVMNVQGKLPDEIPAVSDSVKQQLGPY 229
            ++ PYL+PLLD L FG FVF R P LA +++  + PL+ +YRG PF AFG+F  L++ +VRN   SRFVRFNT QAL++D+ LILPQL  G    A +P  ++E  ++ +FYAV+ +V YA+V N++G+ PD+IP VS++V+ Q+GPY
Sbjct:    2 ASAPYLLPLLDGLVFGRFVFERAPALAALVVPAVAPLFRLYRGTPFFAFGIFFALYVLIVRNTGFSRFVRFNTQQALLIDVVLILPQLLGGAVAAAGVPGWILEAGSSTIFYAVVASVVYAVVSNLRGETPDQIPGVSEAVEAQIGPY 149          
BLAST of Ggra7503.t1 vs. uniprot
Match: A0A7S2ZG79 (Tic20 family protein Ycf60 n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZG79_9RHOD)

HSP 1 Score: 149 bits (375), Expect = 2.380e-41
Identity = 68/152 (44.74%), Postives = 108/152 (71.05%), Query Frame = 0
Query:   78 ERALSTLPYLIPLLDSLSFGTFVFRRVPLLANVLLFPLLPLYNVYRGVPFLAFGVFLLLFIFVVRNVSVSRFVRFNTYQALILDIALILPQLFQGVRLGAAIPTTVVEICTTAVFYAVMMAVSYALVMNVQGKLPDEIPAVSDSVKQQLGPY 229
            +R  S LPY +PLLDSL +G+++F++ P+   ++L+PL P Y +YRG+PFL   +F  +F  VVRN +++RF+R+N  QA++LD+ LI+P LF G    A +P  + E     VFY+++ AV YA++ N++G+LP++IP VS+SV  Q+GP+
Sbjct:   56 DRFFSILPYFLPLLDSLQYGSYLFQKFPVFKELVLYPLAPFYAIYRGIPFLDLAIFFGVFFLVVRNTNINRFIRYNAQQAIMLDLILIIPALFGGA--AAQMPRFIAETGANTVFYSILAAVGYAVIENIRGELPNKIPLVSESVDSQIGPF 205          
BLAST of Ggra7503.t1 vs. uniprot
Match: A0A7S0MAC5 (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MAC5_9CRYP)

HSP 1 Score: 143 bits (361), Expect = 5.740e-39
Identity = 79/169 (46.75%), Postives = 114/169 (67.46%), Query Frame = 0
Query:   61 RMRWSPSGGGGGDVPPVERALSTLPYLIPLLDSLSFGTFVFRRVPLLAN--VLLFPLLPLYNVYRGVPFLAFGVFLLLFIFVVRNVSVSRFVRFNTYQALILDIALILPQLFQGVR-LGAAIPTTVVEICTTAVFYAVMMAVSYALVMNVQGKLPDEIPAVSDSVKQQL 226
            RM+   +GG    VPP+ER ++ LPY +PL DS  +G ++F + PLL+   + LFP++ L N     PF++FGVF++LF FV RN S SRFVRFNT QA+ LDI LI PQL +    +GA +P  + E+ + +VFYA+ +A+ Y  V N+ GK+P+EIP +S+SV  Q+
Sbjct:   62 RMKIGGTGGSDETVPPLERFVACLPYALPLSDSFEWGHYLFDKFPLLSIPFIPLFPVISLLNA----PFVSFGVFIVLFSFVTRNPSFSRFVRFNTLQAIYLDIVLIFPQLIKSFNVIGAPVPVELAEVGSNSVFYAITLAIIYCSVSNLGGKVPNEIPLISESVDSQM 226          
BLAST of Ggra7503.t1 vs. uniprot
Match: L1ILE1 (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1ILE1_GUITC)

HSP 1 Score: 137 bits (344), Expect = 2.740e-37
Identity = 76/159 (47.80%), Postives = 107/159 (67.30%), Query Frame = 0
Query:   70 GGGDVPPVERALSTLPYLIPLLDSLSFGTFVFRRVPLLAN--VLLFPLLPLYNVYRGVPFLAFGVFLLLFIFVVRNVSVSRFVRFNTYQALILDIALILPQLFQGVRLGAAIPTTVVEICTTAVFYAVMMAVSYALVMNVQGKLPDEIPAVSDSVKQQL 226
            G  DVP ++R ++ LPY +PL DS  +G F+F + P+LA   V LFP++ L N     PF++F VF+ LF FV RN S+ RFVR+NT QA+ LDIALI P LF+G  L   +P  + E  +  VFYA++++V YA V N+ GKLP+EIP +S++V  Q+
Sbjct:    4 GSDDVPALDRFVACLPYALPLADSFEWGHFLFDKFPILALPFVPLFPVISLLNA----PFVSFAVFIALFSFVTRNPSIPRFVRYNTLQAIYLDIALIFPSLFKG--LAGNVPLELAETGSNTVFYAILLSVIYAAVSNISGKLPNEIPLISETVDGQM 156          
BLAST of Ggra7503.t1 vs. uniprot
Match: A0A7J7IDD5 (Tic20 family protein Ycf60 n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IDD5_9RHOD)

HSP 1 Score: 139 bits (349), Expect = 6.450e-37
Identity = 74/155 (47.74%), Postives = 100/155 (64.52%), Query Frame = 0
Query:   74 VPPVERALSTLPYLIPLLDSLSFGTFVFRRVPLLANVLLFPLLPLYNVYRGVPFLAFGVFLLLFIFVVRNVSVSRFVRFNTYQALILDIALILPQLFQGVRLGAAIPTTVVEICTTAVFYAVMMAVSYALVMNVQGKLPDEIPAVSDSVKQQLGP 228
            VP  +R  S LPYL+PLLDSL +G +VF R+P+ + V+L PL PL  +YRG+PFL   +F+LL + VVRN   S FVRFNT QAL LDI LILPQLFQG+     I +  ++    AVFY ++  + Y +    +G +PD IP +S++   Q  P
Sbjct:   94 VPWADRIFSILPYLVPLLDSLVYGRYVFERLPIFSLVVLRPLWPLLGIYRGIPFLPLVIFVLLLVLVVRNPRASFFVRFNTMQALTLDIVLILPQLFQGLGTALPISSAAIQGLEAAVFYGILGCILYVVQSCGRGLVPDRIPLISEAAYAQTTP 248          
BLAST of Ggra7503.t1 vs. uniprot
Match: L1J8M5 (Uncharacterized protein n=2 Tax=Geminigeraceae TaxID=589343 RepID=L1J8M5_GUITC)

HSP 1 Score: 136 bits (342), Expect = 2.310e-36
Identity = 67/149 (44.97%), Postives = 100/149 (67.11%), Query Frame = 0
Query:   79 RALSTLPYLIPLLDSLSFGTFVFRRVPLLANVLLFPLLPLYNVYRGVPFLAFGVFLLLFIFVVRNVSVSRFVRFNTYQALILDIALILPQLFQGVRLGAAIPTTVVEICTTAVFYAVMMAVSYALVMNVQGKLPDEIPAVSDSVKQQLG 227
            R +S LPY++P++DSLS+G F+F+++PLLA + + PL P   + +  P ++F  FL LF+FVVRN  V RF+RFNT QAL+L+I LI PQ+     +G  IP    E  +   FYA+   V Y+ + N++G+LP +IP +S +V QQ+G
Sbjct:   53 RVVSCLPYILPMMDSLSYGRFLFQKIPLLAFIFMKPLQPFVELAQAFPMISFVAFLGLFLFVVRNRKVPRFIRFNTMQALLLEILLIFPQILTSGNMGGLIPFVFTEFVSNMTFYAIAAIVGYSCISNLRGELPCKIPVISTAVFQQIG 201          
BLAST of Ggra7503.t1 vs. uniprot
Match: M1UWP3 (Tic20 family protein Ycf60 n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1UWP3_CYAM1)

HSP 1 Score: 139 bits (350), Expect = 3.320e-36
Identity = 71/152 (46.71%), Postives = 101/152 (66.45%), Query Frame = 0
Query:   74 VPPVERALSTLPYLIPLLDSLSFGTFVFRRVPLLANVLLFPLLPLYNVYRGVPFLAFGVFLLLFIFVVRNVSVSRFVRFNTYQALILDIALILPQLFQGVRLGAAIPTTVVEICTTAVFYAVMMAVSYALVMNVQGKLPDEIPAVSDSVKQQ 225
            +P  ER L  LPYL+PLLDSL +G +VF R P+ +  +L PL PL ++YRG+PFL   +F+L+ + VVRN  VS FVRFNT QAL LDIALILPQLFQG+     +    +++   +VFY ++  + Y +    +G++PD IP +S++   Q
Sbjct:  177 IPWSERLLGILPYLVPLLDSLVYGKYVFERFPIFSMFVLQPLWPLLSIYRGIPFLPLIIFVLMLVLVVRNPRVSYFVRFNTMQALTLDIALILPQLFQGLSNALPVSAVAIQVLQASVFYGMLGCILYVIQSCGRGQVPDRIPLISEAAHTQ 328          
BLAST of Ggra7503.t1 vs. uniprot
Match: M2Y1M3 (Tic20 family protein Ycf60 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y1M3_GALSU)

HSP 1 Score: 136 bits (342), Expect = 4.820e-36
Identity = 67/155 (43.23%), Postives = 103/155 (66.45%), Query Frame = 0
Query:   76 PVERALSTLPYLIPLLDSLSFGTFVFRRVPLLANVLLFPLLPLYNVYRGVPFLAFGVFLLLFIFVVRNVSVSRFVRFNTYQALILDIALILPQLF-QGVRLGAAIPTTVVEICTTAVFYAVMMAVSYALVMNVQGKLPDEIPAVSDSVKQQLGPY 229
            P  R L+ LPYL+PLLD + +G FVF + P+++  + +PL PL  VYRG+PFLAF +F +LF F+VRN +V  F+RFNT QA+++D+ LI+PQ+F        AIP  VVE   + VF A+++   Y ++   +G  PD++P +S++ + QL  +
Sbjct:   80 PKNRLLAFLPYLMPLLDGVVYGRFVFAKYPVISAFIFYPLQPLLIVYRGIPFLAFVLFAMLFYFIVRNETVDNFIRFNTMQAILIDLVLIIPQMFLHATSASGAIPPGVVESLCSLVFCAIVVITMYVIICVARGNKPDQVPLISEASRAQLNRF 234          
The following BLAST results are available for this feature:
BLAST of Ggra7503.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IQ311.050e-8677.38Tic20 family protein Ycf60 n=1 Tax=Gracilariopsis ... [more]
A0A5J4YN771.590e-5055.56Tic20 family protein Ycf60 n=2 Tax=Porphyridium pu... [more]
A0A1X6NJR32.120e-4550.68Tic20 family protein Ycf60 (Fragment) n=1 Tax=Porp... [more]
A0A7S2ZG792.380e-4144.74Tic20 family protein Ycf60 n=2 Tax=Rhodosorus mari... [more]
A0A7S0MAC55.740e-3946.75Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
L1ILE12.740e-3747.80Uncharacterized protein n=2 Tax=Guillardia theta T... [more]
A0A7J7IDD56.450e-3747.74Tic20 family protein Ycf60 n=1 Tax=Cyanidiococcus ... [more]
L1J8M52.310e-3644.97Uncharacterized protein n=2 Tax=Geminigeraceae Tax... [more]
M1UWP33.320e-3646.71Tic20 family protein Ycf60 n=1 Tax=Cyanidioschyzon... [more]
M2Y1M34.820e-3643.23Tic20 family protein Ycf60 n=1 Tax=Galdieria sulph... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005691Chloroplast protein import component Tic20PFAMPF16166TIC20coord: 79..221
e-value: 3.6E-18
score: 66.0
IPR005691Chloroplast protein import component Tic20PANTHERPTHR33510PROTEIN TIC 20-II, CHLOROPLASTICcoord: 45..226
NoneNo IPR availablePANTHERPTHR33510:SF5PROTEIN TIC 20-II, CHLOROPLASTICcoord: 45..226
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 205..229
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..83
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 121..140
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 102..120
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 182..204
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 152..170
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 141..151
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 171..181
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 84..101
NoneNo IPR availableTMHMMTMhelixcoord: 183..205
NoneNo IPR availableTMHMMTMhelixcoord: 119..141

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000102_piloncontigtig00000102_pilon:215409..216098 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7503.t1Ggra7503.t1Gracilaria gracilis GNS1m malemRNAtig00000102_pilon 215409..216098 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7503.t1 ID=Ggra7503.t1|Name=Ggra7503.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=230bp
MALCNVSAPRSRLAFAPQLARVVALPRHAAHARALTWRSAPRRAAPPAAA
PQRGVRAAPARMRWSPSGGGGGDVPPVERALSTLPYLIPLLDSLSFGTFV
FRRVPLLANVLLFPLLPLYNVYRGVPFLAFGVFLLLFIFVVRNVSVSRFV
RFNTYQALILDIALILPQLFQGVRLGAAIPTTVVEICTTAVFYAVMMAVS
YALVMNVQGKLPDEIPAVSDSVKQQLGPY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005691Tic20