Ggra750.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra750.t1
Unique NameGgra750.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length237
Homology
BLAST of Ggra750.t1 vs. uniprot
Match: A0A2V3ISU3 (AP-1 complex subunit mu n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISU3_9FLOR)

HSP 1 Score: 360 bits (923), Expect = 3.900e-121
Identity = 174/222 (78.38%), Postives = 195/222 (87.84%), Query Frame = 0
Query:    1 MTMRSHAPFDDVCFHHAVRRERYLQSKVLSLVLPDGVFKLMGYTVRDSRGVTLPVEVGLRFDFDVTAGTGNVSVSLIPRFPLPSRDPRQPSMMLAQVMSAAGAKSTSEVENIMTDVAVRIPFGIGVTGASLSANYETVQFDSSNGTCTWNIGTVARGKTPSLVGNVGLSAEIRNPQVAVSFRIPGFSASGVGVDSLDIAGERYKYYKGLKCVTNAACYEFRT 222
            MT+RS  PFDDVCFHH+VRRERYLQS VL+ V PDGVFK+M YT+RD RGVTLPVEVG RFDFD +AG+G+VSVSL+PRFP+ SR  RQPS+MLAQVMSAAG K TS+ + IM DV+V+IPFG GVTGASLSANY TVQFDSS GTC WNIG+V RGKTPSLVGN+ + +EIRNPQV VSFRIPGFSASGVGVDSL+IAGERYKYYKGLKCVT + CYEFRT
Sbjct:  204 MTIRSQTPFDDVCFHHSVRRERYLQSNVLTFVPPDGVFKVMAYTIRDVRGVTLPVEVGSRFDFDPSAGSGSVSVSLMPRFPIASRSSRQPSLMLAQVMSAAGGKPTSDSDTIMADVSVKIPFGEGVTGASLSANYGTVQFDSSTGTCKWNIGSVTRGKTPSLVGNISVISEIRNPQVVVSFRIPGFSASGVGVDSLEIAGERYKYYKGLKCVTKSGCYEFRT 425          
BLAST of Ggra750.t1 vs. uniprot
Match: R7QE13 (AP-3 complex subunit mu n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QE13_CHOCR)

HSP 1 Score: 237 bits (605), Expect = 9.410e-73
Identity = 129/236 (54.66%), Postives = 164/236 (69.49%), Query Frame = 0
Query:    1 MTMRSHAPFDDVCFHHAVRRERYLQSKVLSLVLPDGVFKLMGYTVRDSRGVTLPVEVGLRFDFDVTAGTGNVSVSLIPRF-----PLPSRDPRQPS--MMLAQVMSAAGAKST--SEVENIMTDVAVRIPFGIGVTGASLSANYETVQFDSSNGTCTWNIGTVARGKTPSLVGNV----GLSAEIRNPQVAVSFRIPGFSASGVGVDSLD-IAGERYKYYKGLKCVTNAACYEFRT 222
            M +R++APFDDV  H  VR  RY +S  L+ V PDG FKLM Y +R++  + LP++V  +  FD  A +G+VS+SL+PRF     P  S     PS  M+L+QVM+AAG K+   SE +++M  V+VRIPFG  VTG SLSANY TVQF+S+ GTCTWN+G V RGKTPSLVG +    G +A   NPQ+ VSFRIPG+S SGV V+SLD +  ERYKYYKGL+C+T A  YE RT
Sbjct:  222 MRIRANAPFDDVALHRCVRLNRYQESGQLAFVPPDGPFKLMTYKIRETNSLNLPIDVQSQIKFDHNACSGSVSISLVPRFASAVAPSLSGASSVPSGSMILSQVMNAAGGKAMGLSEPDSVMDHVSVRIPFGTFVTGCSLSANYGTVQFESTTGTCTWNVGAVPRGKTPSLVGQITLQDGSAAVAANPQILVSFRIPGYSTSGVFVESLDMLPPERYKYYKGLRCITKAGLYEVRT 457          
BLAST of Ggra750.t1 vs. uniprot
Match: A0A5J4YSX9 (AP-3 complex subunit mu-1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YSX9_PORPP)

HSP 1 Score: 130 bits (326), Expect = 7.170e-32
Identity = 84/215 (39.07%), Postives = 109/215 (50.70%), Query Frame = 0
Query:   11 DVCFHHAVRRERYLQSKVLSLVLPDGVFKLMGYTVRDSRGVTLPVEVGLRFDFDVTAGTGNVSVSLIPRFPLPSRDPRQPSMMLAQVMSAAGAKSTSEVENIMTDVAVRIPFGIGVTGASLSANYETVQFDSSNGTCTWNIGTVARGKTPSLVGNVGLSAEI----RNPQVAVSFRIPGFSASGVGVDSLDIAGERYKYYKGLKCVTNAACYEFR 221
            D   H  VR   Y + KVLS V PDG   LM Y VR+ + V+LP+E+     F+     G+V ++ +PRF                  SAAG+  T +         VRIPF   V  A LSA+  TV+FD S   C W IGT+ARG+   L G + L        R P V   F IP  S +G+GV  LD+ GE YK +KGLKC T++  +EFR
Sbjct:  239 DCSLHPCVRYASYERDKVLSFVPPDGKCTLMRYIVRNPQ-VSLPIEIQSDIRFNADRHEGSVRITFVPRF------------------SAAGSSGTEQ-------CGVRIPFPFQVQTAVLSADVGTVRFDPSTRLCDWRIGTLARGRLAQLSGVLHLDPNQPCPERKPSVMADFYIPLASLTGMGVQRLDVYGEAYKPFKGLKCSTSSGQFEFR 427          
BLAST of Ggra750.t1 vs. uniprot
Match: hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI00064518C6 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI00064518C6)

HSP 1 Score: 110 bits (275), Expect = 1.140e-24
Identity = 76/225 (33.78%), Postives = 105/225 (46.67%), Query Frame = 0
Query:    1 MTMRSHAPFDDVCFHHAVRRERYLQSKVLSLVLPDGVFKLMGYTVRDSRGVTLPVEVGLRFDFDVTAGTGNVSVSLIPRFPLPSRDPRQPSMMLAQVMSAAGAKSTSEVENIMTDVAVRIPFGIGVTGASLSANYETVQFDSSNGTCTWNIGTVARGKTPSLVGNVGLSA----EIRNPQVAVSFRIPGFSASGVGVDSLDIAGERYKYYKGLKCVTNAACYEFR 221
            +T  +    DD  FH  VR  R+   +VLS +  DG FKLM Y ++      LPV V  +  F    G  NV                    M+ Q +  A          ++  V V IPF   V+  +LSAN      + S  TC WNIG + + KTP L G++ L A       NP + V F+IP ++ SG+GVDSL    E+YK YKG++ VT A  ++ R
Sbjct:  222 LTFNNPRMLDDCSFHPCVRYSRWENDRVLSFIPADGNFKLMSYRIKGVN--QLPVYVKPQISFGEGGGRVNV--------------------MVGQKIPTA---------KVVESVFVTIPFPKTVSAINLSANVGAHVIEDSTKTCKWNIGKIPKDKTPMLNGSISLQAGQPLPESNPSIMVQFKIPMYTISGLGVDSL-ACSEKYKPYKGVRSVTRAGKFQVR 414          
BLAST of Ggra750.t1 vs. uniprot
Match: R4V2J6 (AP-3 complex subunit Mu-1 n=1 Tax=Coptotermes formosanus TaxID=36987 RepID=R4V2J6_COPFO)

HSP 1 Score: 103 bits (257), Expect = 1.090e-23
Identity = 67/217 (30.88%), Postives = 100/217 (46.08%), Query Frame = 0
Query:    9 FDDVCFHHAVRRERYLQSKVLSLVLPDGVFKLMGYTVRDSRGVTLPVEVGLRFDFDVTAGTGNVSVSLIPRFPLPSRDPRQPSMMLAQVMSAAGAKSTSEVENIMTDVAVRIPFGIGVTGASLSANYETVQFDSSNGTCTWNIGTVARGKTPSLVGNV----GLSAEIRNPQVAVSFRIPGFSASGVGVDSLDIAGERYKYYKGLKCVTNAACYEFR 221
            FDDV FH  VR +R+   ++LS + PDG F+LM Y +     V +P+ V     F   AG G + +++                         G K T  +   +  V + IP    V   SL+ N     FD  +    W+IG +   K PSL G +    G +A   NP + V F I   + SG+ V+ LD+ GE+YK +KG+K +T A  ++ R
Sbjct:   14 FDDVSFHPCVRFKRWESERILSFIPPDGNFRLMSYHIGSQNIVAIPIYVRHNISFR-EAGGGRLDITV-------------------------GPKQT--IGRTVESVIIEIPMPKAVLNCSLTPNQGKYSFDPVSKVLMWDIGRIDTAKLPSLRGTISLQSGAAAVESNPAINVQFTISQLAVSGLKVNRLDMYGEKYKPFKGVKYITKAGRFQIR 202          
BLAST of Ggra750.t1 vs. uniprot
Match: A0A1I8D1Z4 (MHD domain-containing protein n=1 Tax=Rhabditophanes sp. KR3021 TaxID=114890 RepID=A0A1I8D1Z4_9BILA)

HSP 1 Score: 107 bits (266), Expect = 2.080e-23
Identity = 66/224 (29.46%), Postives = 109/224 (48.66%), Query Frame = 0
Query:    1 MTMRSHAPFDDVCFHHAVRRERYLQSKVLSLVLPDGVFKLMGYTVRDSRGVTLPVEVGLRFDFDVTAGTGNVSVSLIPRFPLPSRDPRQPSMMLAQVMSAAGAKSTSEVENIMTDVAVRIPFGIGVTGASLSANYETVQFDSSNGTCTWNIGTVARGKTPSLVGNVGLS--AEIRNPQVAVSFRIPGFSASGVGVDSLDIAGERYKYYKGLKCVTNAACYEFRT 222
            MT+ +    DDV FH  +R  ++   K+LS V PDG FKL+ Y V     V +P+ V  +  F++  G G + +++ P+  +                              + DV + +     +   SL+  +    FD ++    WNIG V +GK P+L G V +S  A + +P ++V F+I   + SG+ V+ LD+ GE YK +KG+K +T A  ++ RT
Sbjct:  220 MTLMNPRILDDVSFHPCIRFRKWENEKMLSFVPPDGNFKLLSYRVGSQSIVAIPLYV--KHSFNLVPGFGKMDLTVGPKHSM---------------------------GKTLEDVILEMEMPKNIQNCSLTPTHGKYSFDPTSRMLIWNIGKVEQGKPPNLKGCVTVSGTATLESPTISVKFKISQLAISGLKVNRLDMFGEAYKPFKGVKYITRAGNFQIRT 414          
BLAST of Ggra750.t1 vs. uniprot
Match: A0A6G4ZXP3 (Putative clathrin-associated protein medium chain n=2 Tax=Rhipicephalus microplus TaxID=6941 RepID=A0A6G4ZXP3_RHIMP)

HSP 1 Score: 103 bits (256), Expect = 3.010e-23
Identity = 69/218 (31.65%), Postives = 103/218 (47.25%), Query Frame = 0
Query:    9 FDDVCFHHAVRRERYLQSKVLSLVLPDGVFKLMGYTVRDSRGVTLPVEVGLRFDFDVTAGTGNVSVSLIPRFPLPSRDPRQPSMMLAQVMSAAGAKSTSEVENIMTDVAVRIPFGIGVTGASLSANYETVQFDSSNGTCTWNIGTVARGKTPSLVGNVGLSAEI----RNPQVAVSFRIPGFSASGVGVDSLDIAGERYKYYKGLKCVTNAACYEFRT 222
            FDDV FH  VR  R+   +VLS V PDG F+LM Y +     V +PV V  +  F   AG G + +S+ P+                Q M              + +V + +P    V   +L+A+     FD  +    W +G +  G+ P+L G++ L A       NP + V F I   + SG+ V+ LD+ GE+YK +KG+K VT A  ++ RT
Sbjct:   43 FDDVSFHPCVRFRRWESERVLSFVPPDGNFRLMSYHIGSQSVVAVPVYVRHQISFR-EAGGGRLDISIGPK----------------QTMGKT-----------VDEVILEVPLCKTVLNVTLTASQGKHSFDPVSKNLIWEVGRIEPGRLPNLRGSMALQAGAPPPDANPTITVHFTINPLAVSGLKVNRLDMYGEKYKPFKGVKYVTKAGRFQVRT 232          
BLAST of Ggra750.t1 vs. uniprot
Match: A0A4X3P961 (Apm-3 n=2 Tax=Pristionchus pacificus TaxID=54126 RepID=A0A4X3P961_PRIPA)

HSP 1 Score: 105 bits (263), Expect = 5.550e-23
Identity = 68/224 (30.36%), Postives = 109/224 (48.66%), Query Frame = 0
Query:    1 MTMRSHAPFDDVCFHHAVRRERYLQSKVLSLVLPDGVFKLMGYTVRDSRGVTLPVEVGLRFDFDVTAGTGNVSVSLIPRFPLPSRDPRQPSMMLAQVMSAAGAKSTSEVENIMTDVAVRIPFGIGVTGASLSANYETVQFDSSNGTCTWNIGTVARGKTPSLVGNVGLS--AEIRNPQVAVSFRIPGFSASGVGVDSLDIAGERYKYYKGLKCVTNAACYEFRT 222
            MT+ +    DDV FH  VR +R+   +VLS V PDG F+L+ Y +     V +PV V  R    +  G G+                        ++    G K +  +  ++ DV V +     V   +L+ +     FD ++    WN+G +  GK P+L G+V +S  A +  P ++V F+I   +ASG+ V+ LD+ GE YK +KG+K +T A  ++ RT
Sbjct:  220 MTLVNPRLLDDVSFHPCVRFKRWENERVLSFVPPDGNFRLLSYHIATQNIVAIPVYV--RHTIMLKGGVGS------------------------RIELTVGPKQS--MGKVLEDVVVEMTMPKAVQNCNLTPSVGKYSFDPASKLLQWNVGKIELGKPPTLKGSVAVSGSAAVEPPPISVKFKINQLAASGLKVNRLDMYGENYKPFKGVKYITKAGRFQIRT 415          
BLAST of Ggra750.t1 vs. uniprot
Match: A0A401NXA0 (MHD domain-containing protein n=6 Tax=Galeoidea TaxID=119195 RepID=A0A401NXA0_SCYTO)

HSP 1 Score: 105 bits (262), Expect = 6.060e-23
Identity = 71/217 (32.72%), Postives = 105/217 (48.39%), Query Frame = 0
Query:   10 DDVCFHHAVRRERYLQSKVLSLVLPDGVFKLMGYTVRDSRGVTLPVEVGLRFDFDVTAGTGNVSVSLIPRFPLPSRDPRQPSMMLAQVMSAAGAKSTSEVENIMTDVAVRIPFGIGVTGASLSANYETVQFDSSNGTCTWNIGTVARGKTPSLVGNVGLSAEI----RNPQVAVSFRIPGFSASGVGVDSLDIAGERYKYYKGLKCVTNAACYEFRT 222
            DDV FH  VR +R+   +VLS + PDG F+LM Y V     V +PV +     F  +  TG   V++ P+                Q M          VE+++  + + +P G  V   +L+A   T  FD       W+IG +   K P+L G + L +       NP ++V FRI   + SG+ V+ LD+ GERYK +KG+K VT A  ++ RT
Sbjct:  204 DDVSFHPCVRFKRWESERVLSFIPPDGNFRLMSYHVSSQNLVAIPVYIKHNISFRESGSTGRFDVTIGPK----------------QTMGKT-------VESVL--MIIHMPKG--VLNMTLTAAQGTYTFDPVTKMLIWDIGKITLPKLPTLRGVISLQSTAPKPEENPTISVQFRIQQLAVSGLKVNRLDMYGERYKPFKGVKYVTKAGKFQVRT 393          
BLAST of Ggra750.t1 vs. uniprot
Match: A0A8J1XVJ9 (Ofus.G081698 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1XVJ9_OWEFU)

HSP 1 Score: 105 bits (263), Expect = 6.520e-23
Identity = 71/217 (32.72%), Postives = 106/217 (48.85%), Query Frame = 0
Query:   10 DDVCFHHAVRRERYLQSKVLSLVLPDGVFKLMGYTVRDSRGVTLPVEVGLRFDFDVTAGTGNVSVSLIPRFPLPSRDPRQPSMMLAQVMSAAGAKSTSEVENIMTDVAVRIPFGIGVTGASLSANYETVQFDSSNGTCTWNIGTVARGKTPSLVGNVGLSA----EIRNPQVAVSFRIPGFSASGVGVDSLDIAGERYKYYKGLKCVTNAACYEFRT 222
            DDV FH  VR +R+   KVLS V PDG FK+M Y +     V +PV +     +   +G G + +++ PR                Q M          VEN    V++ IPF   V   +L+ N     FD  +   TW++G +   K P++ GN+ L         NP ++V+F I   + SGV V+ LD+ GE+YK +KG+K +T A  ++ RT
Sbjct:  244 DDVSFHPCVRFKRWESEKVLSFVPPDGAFKVMSYHIGAQNMVAIPVYLKHSIQYREGSG-GRLDITVGPR----------------QTMGKT-------VEN----VSLVIPFPKAVLNVTLTPNQGKYSFDPVSKIMTWDVGQIDTNKLPNIRGNINLQTGQPVPESNPTISVNFTISQLAVSGVKVNRLDMYGEKYKPFKGVKYLTKAGKFQVRT 432          
The following BLAST results are available for this feature:
BLAST of Ggra750.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ISU33.900e-12178.38AP-1 complex subunit mu n=1 Tax=Gracilariopsis cho... [more]
R7QE139.410e-7354.66AP-3 complex subunit mu n=1 Tax=Chondrus crispus T... [more]
A0A5J4YSX97.170e-3239.07AP-3 complex subunit mu-1 n=1 Tax=Porphyridium pur... [more]
hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI00064518C61.140e-2433.78hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
R4V2J61.090e-2330.88AP-3 complex subunit Mu-1 n=1 Tax=Coptotermes form... [more]
A0A1I8D1Z42.080e-2329.46MHD domain-containing protein n=1 Tax=Rhabditophan... [more]
A0A6G4ZXP33.010e-2331.65Putative clathrin-associated protein medium chain ... [more]
A0A4X3P9615.550e-2330.36Apm-3 n=2 Tax=Pristionchus pacificus TaxID=54126 R... [more]
A0A401NXA06.060e-2332.72MHD domain-containing protein n=6 Tax=Galeoidea Ta... [more]
A0A8J1XVJ96.520e-2332.72Ofus.G081698 protein n=1 Tax=Owenia fusiformis Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.60.40.1170Mu homology domain, subdomain Bcoord: 53..219
e-value: 5.3E-34
score: 119.8
NoneNo IPR availableGENE3D2.60.40.1170Mu homology domain, subdomain Bcoord: 3..217
e-value: 5.3E-34
score: 119.8
NoneNo IPR availablePANTHERPTHR10529:SF340CARMINE, ISOFORM Acoord: 6..221
NoneNo IPR availablePANTHERPTHR10529AP COMPLEX SUBUNIT MUcoord: 6..221
IPR028565Mu homology domainPFAMPF00928Adap_comp_subcoord: 7..221
e-value: 1.8E-25
score: 89.8
IPR028565Mu homology domainPROSITEPS51072MHDcoord: 1..221
score: 15.475019
IPR036168AP-2 complex subunit mu, C-terminal superfamilySUPERFAMILY49447Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptorcoord: 6..221

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000164_piloncontigtig00000164_pilon:195407..196117 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra750.t1Ggra750.t1Gracilaria gracilis GNS1m malemRNAtig00000164_pilon 195407..196117 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra750.t1 ID=Ggra750.t1|Name=Ggra750.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=237bp
MTMRSHAPFDDVCFHHAVRRERYLQSKVLSLVLPDGVFKLMGYTVRDSRG
VTLPVEVGLRFDFDVTAGTGNVSVSLIPRFPLPSRDPRQPSMMLAQVMSA
AGAKSTSEVENIMTDVAVRIPFGIGVTGASLSANYETVQFDSSNGTCTWN
IGTVARGKTPSLVGNVGLSAEIRNPQVAVSFRIPGFSASGVGVDSLDIAG
ERYKYYKGLKCVTNAACYEFRTLRECIVGVMVKRTS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028565MHD
IPR036168AP2_Mu_C_sf