Ggra7471.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra7471.t1
Unique Name	Ggra7471.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	158

Homology

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BLAST of Ggra7471.t1 vs. uniprot
Match: A0A2V3IGU4 (Pentatricopeptide repeat-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IGU4_9FLOR)

HSP 1 Score: 166 bits (420), Expect = 7.740e-45
Identity = 88/152 (57.89%), Postives = 110/152 (72.37%), Query Frame = 0

Query:    1 MDGCRRCGQWQRAVELLAFMKKHSSEYEHSLVPSPSTACYNAALYAAGIGGEDWRTSVKIYESLLADQTQQPDYVTYSAMASIILRKRHRISEWHIVMQVSQALEDLLLEHSKPPDETRKRRDTIEGLDRGLNKTMRKKLLSKMSSLKELIE 152
            MDGCRR GQWQRAVELL FM+  ++  E SLVP PSTACYNAALYAAGIGG DW+ +V I+ESL+ D+  +PD VT+SAMASIIL+ R  +SEWHIV +V  +LE+L    +       ++R  IEG +R L+   RKKLL+K+  LK LIE
Sbjct:  655 MDGCRRFGQWQRAVELLRFMQTRNASGECSLVPRPSTACYNAALYAAGIGGRDWKQAVSIFESLVDDEVHRPDAVTFSAMASIILQNRRDVSEWHIVQRVYDSLEELATGDTARLGVVEQKR--IEGSNRKLDAPERKKLLAKLGRLKTLIE 804

The following BLAST results are available for this feature:

BLAST of Ggra7471.t1 vs. uniprot

BLAST of Ggra7471.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IGU4	7.740e-45	57.89	Pentatricopeptide repeat-containing protein n=1 Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 1..116 e-value: 5.9E-9 score: 37.7

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000102_pilon	contig	tig00000102_pilon:134538..135011 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra7471.t1	Ggra7471.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000102_pilon 134538..135011 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra7471.t1 ID=Ggra7471.t1|Name=Ggra7471.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=158bp
MDGCRRCGQWQRAVELLAFMKKHSSEYEHSLVPSPSTACYNAALYAAGIG
GEDWRTSVKIYESLLADQTQQPDYVTYSAMASIILRKRHRISEWHIVMQV
SQALEDLLLEHSKPPDETRKRRDTIEGLDRGLNKTMRKKLLSKMSSLKEL
IESVNNP*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf