Ggra7442.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7442.t1
Unique NameGgra7442.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length235
Homology
BLAST of Ggra7442.t1 vs. uniprot
Match: A0A2V3IU64 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IU64_9FLOR)

HSP 1 Score: 247 bits (630), Expect = 1.960e-79
Identity = 128/196 (65.31%), Postives = 152/196 (77.55%), Query Frame = 0
Query:   39 VRDRMNEFVDTMKHAVDDAEAATKKKDVVDLGQSLNMLEAKFSSLRSALAHELGARAPQFASNNEVAKQIMDKSSGLVQGVVSQREELRRLSSDIKEVDSAIRALREGLTTFEKDVGELHRVIADLHVSHNEMSSIHDETKEKLKEVVADAHHMARTGTHWILYLVIILELGAFVGYMYFKKSGGTLAHKAYGKFG 234
            VRD MNEFV+T+KHAV++AE+A+ KKDVVDLGQSL MLE KFSSLRSALA ELGA+AP  ASNN VAK++MDKS+ LVQGVV+QREELRRLSSD+K+VDSAIRAL                      VSHNEMS++HDE KEKLKEVVADAHHMA+T TH +LY+++  E+  FV Y+Y K+   + AHKAYGKFG
Sbjct:   39 VRDEMNEFVNTVKHAVNEAESASNKKDVVDLGQSLAMLEKKFSSLRSALAQELGAKAPNLASNNAVAKELMDKSTNLVQGVVTQREELRRLSSDVKQVDSAIRALXXXXXXXXXXXXXXXXXXXXXXVSHNEMSAVHDEAKEKLKEVVADAHHMAQTSTHSLLYILVAAEVAGFVLYLYVKRPASSFAHKAYGKFG 234          
BLAST of Ggra7442.t1 vs. uniprot
Match: S0F2U0 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=S0F2U0_CHOCR)

HSP 1 Score: 236 bits (603), Expect = 2.010e-75
Identity = 112/197 (56.85%), Postives = 158/197 (80.20%), Query Frame = 0
Query:   38 DVRDRMNEFVDTMKHAVDDAEAATKKKDVVDLGQSLNMLEAKFSSLRSALAHELGARAPQFASNNEVAKQIMDKSSGLVQGVVSQREELRRLSSDIKEVDSAIRALREGLTTFEKDVGELHRVIADLHVSHNEMSSIHDETKEKLKEVVADAHHMARTGTHWILYLVIILELGAFVGYMYFKKSGGTLAHKAYGKFG 234
            D+R RMN+ VD++K AV DAE+A KK++VVDLGQSL++LE KFS+LR AL  ELGA++   AS++ VA +++D+S+ L++ +V+QRE+LRRL+ D+KEVDSAIRALREGL+ FEKD  EL++V+ DLHVSHNE+ S H+E    +KE++AD+H + R  TH + Y +++LE+ + V ++YFK+ GG LAHKAYGKFG
Sbjct:   32 DMRHRMNDLVDSVKGAVHDAESAGKKREVVDLGQSLHLLETKFSALRQALQQELGAKSSTLASSSAVATELVDRSNTLIRNIVTQREDLRRLTGDVKEVDSAIRALREGLSNFEKDAAELNKVMGDLHVSHNELKSAHEEAHSSVKELMADSHEVVRKSTHGLFYAILLLEIASLVAFVYFKRPGGQLAHKAYGKFG 228          
BLAST of Ggra7442.t1 vs. uniprot
Match: A0A1X6NRB3 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NRB3_PORUM)

HSP 1 Score: 62.0 bits (149), Expect = 9.670e-8
Identity = 44/151 (29.14%), Postives = 78/151 (51.66%), Query Frame = 0
Query:   33 DHQQQDVRDRMNEFVDTMKHAVDDAEAATKKKDVVDLGQSLNMLEAKFSSLRSALAHELGARAPQFASNNEVAKQIMDKSSGLVQGVVSQREELRRLSSDIKEVDS----AIRALREGLTTFEKDVGELHRVIADLHVSHNEMSSIHDETK 179
            D   + V D    FV+ +++ + D  AA+ K+DVVDLGQSL++L++KF  L+  L  ++ A A +  +   VA +       L Q V ++   LR ++ ++ ++ +    A+  + + +T  EK V EL +    L   HNE+  +    K
Sbjct:   87 DDNAKTVHDDYESFVEGVENVMTDQRAASSKRDVVDLGQSLHLLDSKFEHLKQGLYEQIAAAASRKGNKASVAAE----GRALAQKVKTKYTNLRTVAREVLDILAKNARAVDQVGDTMTGLEKVVVELQK---HLEKHHNEVIELGSSVK 230          
The following BLAST results are available for this feature:
BLAST of Ggra7442.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IU641.960e-7965.31Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
S0F2U02.010e-7556.85Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A1X6NRB39.670e-829.14Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 21..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..20
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 199..218
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 219..234
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..198
NoneNo IPR availableTMHMMTMhelixcoord: 5..22
NoneNo IPR availableTMHMMTMhelixcoord: 199..218

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000102_piloncontigtig00000102_pilon:24344..25048 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7442.t1Ggra7442.t1Gracilaria gracilis GNS1m malemRNAtig00000102_pilon 24344..25048 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7442.t1 ID=Ggra7442.t1|Name=Ggra7442.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=235bp
MLHSTLRFFVLLLLFQALILRSRADYDSKRTADHQQQDVRDRMNEFVDTM
KHAVDDAEAATKKKDVVDLGQSLNMLEAKFSSLRSALAHELGARAPQFAS
NNEVAKQIMDKSSGLVQGVVSQREELRRLSSDIKEVDSAIRALREGLTTF
EKDVGELHRVIADLHVSHNEMSSIHDETKEKLKEVVADAHHMARTGTHWI
LYLVIILELGAFVGYMYFKKSGGTLAHKAYGKFG*
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