Ggra7441.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7441.t1
Unique NameGgra7441.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length249
Homology
BLAST of Ggra7441.t1 vs. uniprot
Match: A0A2V3IRB1 (Protein THYLAKOID FORMATION 1, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRB1_9FLOR)

HSP 1 Score: 337 bits (863), Expect = 5.550e-113
Identity = 172/225 (76.44%), Postives = 195/225 (86.67%), Query Frame = 0
Query:    1 MARFNRTFSRPIPIVYRTVINEMLTTSHLAVVCAMWRFDALFAFGFDSIFSTFLRYYPDEEERDLLYSACVSALQLDLDNIKSSAASVRDWLDTKTEEDVFTALKTAPPSATTEVVGPVIEALAYVRDASDFDWYYSRLFGIGLIQVMDAVGAELSAANADKWADEIGLVQSKFSAEMAAYLSNMERLKQAEQIFAEATAREAKKTAERLAAKAEAAAKEAAQLE 225
            MARFN  F+RPIPIVYR V+NEMLTT+HLAVVCAMWRFDA+FAFGFD+IFS FLRYYPDE ERD LY AC  +L LD+  I+ +AA V  WL  KTE DVF AL  APPSA+ + VGPV+EALAY+RDA+DFDWYYSRLFGIGLIQ+M+AVG EL+ ANA+KWA  +GL+QSKF+AEM AYLSNMERLKQAEQIFAEATAREAKKTAERLAA+A+AAAKEA QLE
Sbjct:   95 MARFNAQFARPIPIVYRAVVNEMLTTTHLAVVCAMWRFDAVFAFGFDAIFSAFLRYYPDERERDQLYVACAQSLHLDVHAIRRTAADVSAWLQDKTEADVFNALNAAPPSASADTVGPVVEALAYIRDAADFDWYYSRLFGIGLIQIMNAVGVELTVANAEKWAHRVGLMQSKFTAEMGAYLSNMERLKQAEQIFAEATAREAKKTAERLAARAQAAAKEADQLE 319          
BLAST of Ggra7441.t1 vs. uniprot
Match: A0A1X6PJF0 (Uncharacterized protein n=2 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PJF0_PORUM)

HSP 1 Score: 206 bits (523), Expect = 8.000e-62
Identity = 107/227 (47.14%), Postives = 154/227 (67.84%), Query Frame = 0
Query:    1 MARFNRTFSRPIPIVYRTVINEMLTTSHLAVVCAMWRFDALFAFGFDSIFSTFLRYYPDEEERDLLYSACVSALQLDLDNIKSSAASVRDWLDTKTEEDVFTALKTAPPSATTEVVGPVIEALAYVRDASDFDWYYSRLFGIGLIQVMDAVGAELSAANADKWADEIGLVQSKFSAEMAAYLSNMERLKQAEQIFAEATAREAKKTAERLAAKAEAAAKEAAQLEQE 227
            M +FN  F RP+P VYR +I+E+L T+HLA  CAMW++DA+FA+GFD  F+ FL++YP E ER  LY A  ++L    + +   A+SVR W + K+E D+F A K     A+     P + AL YV +A +F++YYSRL GIG+I++M   G EL+  NA +W+DE+ + ++K + E+  Y + +ERLK AEQ+FAE  AR+A+KTAERL  +AE AA EA + E+E
Sbjct:  102 MTKFNELFPRPVPSVYRNIISEILMTTHLAKHCAMWKYDAIFAYGFDETFNEFLQFYPIESERTALYHAVANSLGFSPEELAKDASSVRSWAEGKSEADIFAASKAGAGDASE----PAVAALQYVANADEFEFYYSRLHGIGVIKLMTGAGVELTPENAGRWSDELQVPKAKLTTELGTYEAAVERLKAAEQLFAEIAARDARKTAERLERRAEQAAAEATEAEKE 324          
BLAST of Ggra7441.t1 vs. uniprot
Match: S0F2S3 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=S0F2S3_CHOCR)

HSP 1 Score: 196 bits (498), Expect = 1.270e-59
Identity = 106/193 (54.92%), Postives = 134/193 (69.43%), Query Frame = 0
Query:   35 MWRFDALFAFGFDSIFSTFLRYYPDEEERDLLYSACVSALQLDLDNIKSSAASVRDWLDTKTEEDVFTALKTAPPSATTEVVGPVIEALAYVRDASDFDWYYSRLFGIGLIQVMDAVGAELSAANADKWADEIGLVQSKFSAEMAAYLSNMERLKQAEQIFAEATAREAKKTAERLAAKAEAAAKEAAQLEQE 227
            MWRFD++FA+GFD +F  FLRYYPD +ERD LY ACV +++LD + I+S+AA+V DWL+ K+E+DV  AL  AP  A+   VGPVIEA+AYVR A  FDWYYSR+FGIGLIQVM  VG +LS  NA+ WAD + + +SKF+AEM AYLS+M                         AA+A+AAAKEA QLE+E
Sbjct:    1 MWRFDSVFAYGFDQVFEQFLRYYPDLDERDALYKACVESVRLDYNTIRSNAAAVGDWLEGKSEKDVLDALAAAPEGASAADVGPVIEAVAYVRHAGPFDWYYSRMFGIGLIQVMAKVGVDLSITNAEAWADAMKMEKSKFAAEMGAYLSSMXXXXXXXXXXXXXXXXXXXXXXXXXAARAQAAAKEADQLEKE 193          
BLAST of Ggra7441.t1 vs. uniprot
Match: A0A7S3A1V4 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A1V4_9RHOD)

HSP 1 Score: 192 bits (487), Expect = 9.820e-57
Identity = 99/222 (44.59%), Postives = 151/222 (68.02%), Query Frame = 0
Query:    1 MARFNRTFSRPIPIVYRTVINEMLTTSHLAVVCAMWRFDALFAFGFDSIFSTFLRYYPDEEERDLLYSACVSALQ-LDLDNIKSSAASVRDWLDTKTEEDVFTALKTAPPSATTEVVGPVIEALAYVRDASDFDWYYSRLFGIGLIQVMDAVGAELSAANADKWADEIGLVQSKFSAEMAAYLSNMERLKQAEQIFAEATAREAKKTAERLAAKAEAAAKEA 221
            MA+FN +F+RP+P VYR+++NE++T +HL  VC MWR+DA+F FGF  I   +  +YP  EE++ L+S  V AL  LDL  ++    +V  ++  KTE++V + ++    S ++E  GPV+ A  YV++A  ++WYYSR FG G+I +++ +G EL+  N ++WA  IG  + K   E+  YLS++ERLKQAEQ+FA+  ARE KK A++LA  A+AA +EA
Sbjct:   75 MAKFNESFARPVPSVYRSIVNEIITLNHLTTVCPMWRYDAVFGFGFTQIMDKYFSFYPSAEEKEKLFSCIVGALSGLDLQKMRDDTKAVEAFIAGKTEDEVLSMIE----SGSSE--GPVLSAFQYVKEAEFYEWYYSRNFGFGVIFIIEQLGGELTDENVERWAKAIGASEVKIKDELGVYLSSLERLKQAEQMFADLAAREKKKAADQLAVDAKAALEEA 290          
BLAST of Ggra7441.t1 vs. uniprot
Match: A0A7S0BGJ2 (Hypothetical protein (Fragment) n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BGJ2_9RHOD)

HSP 1 Score: 190 bits (482), Expect = 3.610e-56
Identity = 95/217 (43.78%), Postives = 144/217 (66.36%), Query Frame = 0
Query:    1 MARFNRTFSRPIPIVYRTVINEMLTTSHLAVVCAMWRFDALFAFGFDSIFSTFLRYYPDEEERDLLYSACVSALQ-LDLDNIKSSAASVRDWLDTKTEEDVFTALKTAPPSATTEVVGPVIEALAYVRDASDFDWYYSRLFGIGLIQVMDAVGAELSAANADKWADEIGLVQSKFSAEMAAYLSNMERLKQAEQIFAEATAREAKKTAERLAAKAEA 216
            MA+FN TF+RP+P VYRT++NE++T +HL  VC MW +DA++ FGF  I   +  +YP  EE++ L S  V +L  LDL  ++  A ++  ++  KTE+DV   +++          GPV+ A  YV+++  +DWYYSR FG G+I +++ +G EL+ AN ++WA  IG+ + K   E+  YLS++ERLKQAEQ+FA+  ARE KK A++LA  A+A
Sbjct:   74 MAKFNETFARPVPSVYRTIVNEIITLNHLTTVCPMWHYDAVYGFGFIEIMEKYFSFYPSAEEKEKLLSCIVGSLTGLDLQTMRDDAKAIEAFVAEKTEDDVLAMIESGSRE------GPVLSAFQYVKESEFYDWYYSRSFGFGVIFIVEKLGGELTDANLERWAKAIGVSEVKIKDELGVYLSSLERLKQAEQMFADLAAREKKKAADQLAVDAKA 284          
BLAST of Ggra7441.t1 vs. uniprot
Match: A0A7S1XEQ4 (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XEQ4_9RHOD)

HSP 1 Score: 160 bits (405), Expect = 8.190e-45
Identity = 83/198 (41.92%), Postives = 127/198 (64.14%), Query Frame = 0
Query:    4 FNRTFSRPIPIVYRTVINEMLTTSHLAVVCAMWRFDALFAFGFDSIFSTFLRYYPDEEERDLLYSACVSALQLDLDNIKSSAASVRDWLDTKTEEDVFTALKTAPPSATTEVVGPVIEALAYVRDASDFDWYYSRLFGIGLIQVMDAVGAELSAANADKWADEIGLVQSKFSAEMAAYLSNMERLKQAEQIFAEATAR 201
            FN TF+RP+  VY ++INE L ++HLA VCA +R+D +F +GF   F+ FL  YP+E +R LL+ A + AL LD   I+  A +VR WL++ + ED   +L  +P +        V +AL YV  A  F+W+YSR+FGIGL ++M+ VG ++      +W++++ +  +K   E A+Y S +E++K AEQ+FAE TAR
Sbjct:   46 FNDTFNRPVFSVYSSIINEFLASTHLARVCAAFRYDPIFGYGFTESFNDFLANYPNEGDRTLLFDAIIKALDLDRQQIRDDAEAVRSWLESVSSEDEVFSLLDSPGN------NKVAQALHYVATAPYFEWFYSRVFGIGLFKIMEKVGVKIDQEALRRWSEKLNISIAKLEDEWASYGSAIEKMKVAEQLFAEVTAR 237          
BLAST of Ggra7441.t1 vs. uniprot
Match: A0A5J4Z783 (Protein THYLAKOID FORMATION 1, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z783_PORPP)

HSP 1 Score: 152 bits (385), Expect = 2.170e-41
Identity = 86/224 (38.39%), Postives = 138/224 (61.61%), Query Frame = 0
Query:    4 FNRTFSRPIPIVYRTVINEMLTTSHLAVVCAMWRFDALFAFGFDSIFSTFLRYYPDEEERDLLYSACVSALQLDLDNIKSSAASVRDWLDTKTEEDVFTALKTAPPSATTEVVGPVIEALAYVRDASDFDWYYSRLFGIGLIQVMDAVGAELSAANADKWADEIGLVQSKFSAEMAAYLSNMERLKQAEQIFAEATAREAKKTAERLAAKAEAAAKEAAQLEQE 227
            F  +++RPIP VY +++NE LTT+HL+V  AM+ +DA+FA+GF   F  F  +YPDEE+R  L++  + AL+LD   + S A++V+ W + KT  D+      A  S+       ++ A    R+     +++SR+F +G++ +++AVG + +   ADK A+++G         M  Y + MERLK AEQ++AE  AR++K+ AERLA KA+ A +EA + E E
Sbjct:   79 FFNSYARPIPTVYSSLVNETLTTTHLSVYHAMFTYDAMFAYGFKESFDRFFAFYPDEEQRKRLFTCMLQALELDEKKLVSDASAVKAWTEGKTVADLMAI---ADGSSEDTSCPGLVSAFKVAREKKPMFYHFSRMFSLGIVYLLEAVGGKTTQEEADKIAEKLGKTSYYIKDAMDQYRAGMERLKAAEQLYAEVNARDSKRLAERLAEKAKRAEEEALRAENE 299          
BLAST of Ggra7441.t1 vs. uniprot
Match: A0A7S0ZHJ1 (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZHJ1_9RHOD)

HSP 1 Score: 146 bits (369), Expect = 7.170e-39
Identity = 84/214 (39.25%), Postives = 129/214 (60.28%), Query Frame = 0
Query:    4 FNRTFSRPIPIVYRTVINEMLTTSHLAVVCAMWRFDALFAFGFDSIFSTFLRYYPDEEERDLLYSACVSALQLDLDNIKSSAASVRDWLDTKTEEDVFTALKTAPPSATTEVVGPVIEALAYVRDASDFDWYYSRLFGIGLIQVMDAVGAELSAANADKWADEIGLVQSKFSAEMAAYLSNMERLKQAEQIFAEATAREAKKTAERLAAKAEAA 217
            F + F+RP+P VY T+INE LTT+HL+VV   + +DA+FA+GF+  F+ FL+YYP E E++ L+   + AL+LD+  I+  AASVR W++ KT ED+F     A    + +    V  A    R+     ++ SR+F +G + +++AV A+    + +K A  + +        M    + ME+LK AEQ+FAE  AR+ +K AERLA KA+ A
Sbjct:   89 FFKLFARPLPTVYSTLINETLTTTHLSVVNYAFNYDAIFAYGFEESFNRFLQYYPSESEKERLFECLLKALELDVGKIRKDAASVRQWVEGKTIEDLF-----AVADGSADDGSSVASAFRTARENDRMSFHISRMFALGCVYLLEAVKADAEGEDCEKLAAVLDVSAFGIKDAMDQNRAGMEKLKAAEQLFAEVAARDKRKNAERLAEKAKLA 297          
BLAST of Ggra7441.t1 vs. uniprot
Match: M1VAS6 (Photosystem II biogenesis protein Psb29 n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1VAS6_CYAM1)

HSP 1 Score: 145 bits (366), Expect = 2.290e-38
Identity = 86/228 (37.72%), Postives = 136/228 (59.65%), Query Frame = 0
Query:    1 MARFNRTFSRPIPIVYRTVINEMLTTSHLAVVCAMWRFDALFAFGFDSIFSTFLRYYPDEEERDLLYSACVSALQLDLDNIKSSAASVRDWLDTKTEEDVFTALK--TAPPSATTEVVGPVIEALAYVRDASDFDWYYSRLFGIGLIQVMDAVGAELSAANADKWADEIGLVQSKFSAEMAAYLSNMERLKQAEQIFAEATAREAKKTAERLAAKAEAAAKEAAQLEQ 226
            + RF R   RP+   Y+  ++E+LTT+HLA+VCAM+R+D +FA GF S++  F R YP  +ER+ L+     AL LD+  +   A     ++  KTE ++   ++  T   SA  +   PVI AL   R A D ++YY+RLFGIGL+++M + G E++  +  KWA+ + +  ++   ++  Y  +ME+L QAE +F E  ARE  + A+ LA KA+ A +E  + EQ
Sbjct:   93 VTRFYRNLKRPVVFYYQQAVDEILTTAHLALVCAMFRYDVIFALGFVSVYRDFFRSYPRPDERESLFRCICDALDLDVGQVTKEADDALAYVQGKTEAELIEEIERDTGEDSAEAQ---PVIAALRACRRA-DGEYYYTRLFGIGLMKIMSSCGVEINLESVKKWANMLKISYARLDQDIGTYQMSMEKLTQAEVMFKELEARERARIADELARKAQEAEEELRKREQ 316          
BLAST of Ggra7441.t1 vs. uniprot
Match: M2WRB2 (Thylakoid protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2WRB2_GALSU)

HSP 1 Score: 142 bits (359), Expect = 1.920e-37
Identity = 78/227 (34.36%), Postives = 133/227 (58.59%), Query Frame = 0
Query:    1 MARFNRTFSRPIPIVYRTVINEMLTTSHLAVVCAMWRFDALFAFGFDSIFSTFLRYYPDEEERDLLYSACVSALQLDLDNIKSSAASVRDWLDTKTEEDVFTALKTAPPSATTEVVGPVIEALAYVRDASDFDWYYSRLFGIGLIQVMDAVGAELSAANADKWADEIGLVQSKFSAEMAAYLSNMERLKQAEQIFAEATAREAKKTAERLAAKAEAAAKEAAQLEQE 227
            ++ F + F  PIP +YRT++ E+L T+HLA V   +++D +FA G+  +   F + YP  EE++ L+ +   AL LD + +K  A+ + +W  ++TE ++  A++         ++  + +   +V         YSRLFG+GL+++M+  G E ++    KWA  + +   K   ++  Y  ++ERLKQAEQ+FAE  AR+ KK AE+LA KA+ A +EA + EQ+
Sbjct:   91 ISDFLKHFRHPIPSIYRTIVQELLVTTHLARVAVGFQYDPVFALGYQMVTQVFFKSYPKVEEKEKLFDSMCKALLLDYERMKKDASVLEEWTRSRTEREILLAIEEGGDDPLANLLHSIAQNDGFV---------YSRLFGLGLVRMMELCGEEANSERCQKWASALHISSLKLEQDLDTYQQSLERLKQAEQLFAELEARQKKKLAEKLAEKAKRAQEEAMKAEQQ 308          
The following BLAST results are available for this feature:
BLAST of Ggra7441.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IRB15.550e-11376.44Protein THYLAKOID FORMATION 1, chloroplastic n=1 T... [more]
A0A1X6PJF08.000e-6247.14Uncharacterized protein n=2 Tax=Porphyra umbilical... [more]
S0F2S31.270e-5954.92Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S3A1V49.820e-5744.59Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S0BGJ23.610e-5643.78Hypothetical protein (Fragment) n=2 Tax=Rhodosorus... [more]
A0A7S1XEQ48.190e-4541.92Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A5J4Z7832.170e-4138.39Protein THYLAKOID FORMATION 1, chloroplastic n=1 T... [more]
A0A7S0ZHJ17.170e-3939.25Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
M1VAS62.290e-3837.72Photosystem II biogenesis protein Psb29 n=1 Tax=Cy... [more]
M2WRB21.920e-3734.36Thylakoid protein n=1 Tax=Galdieria sulphuraria Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 200..231
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 216..248
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 228..248
NoneNo IPR availablePANTHERPTHR34793:SF1PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTICcoord: 3..225
IPR017499Protein Thf1PFAMPF11264ThylakoidFormatcoord: 3..209
e-value: 1.4E-38
score: 132.7
IPR017499Protein Thf1PANTHERPTHR34793PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTICcoord: 3..225

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000102_piloncontigtig00000102_pilon:23115..23861 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7441.t1Ggra7441.t1Gracilaria gracilis GNS1m malemRNAtig00000102_pilon 23115..23861 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7441.t1 ID=Ggra7441.t1|Name=Ggra7441.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=249bp
MARFNRTFSRPIPIVYRTVINEMLTTSHLAVVCAMWRFDALFAFGFDSIF
STFLRYYPDEEERDLLYSACVSALQLDLDNIKSSAASVRDWLDTKTEEDV
FTALKTAPPSATTEVVGPVIEALAYVRDASDFDWYYSRLFGIGLIQVMDA
VGAELSAANADKWADEIGLVQSKFSAEMAAYLSNMERLKQAEQIFAEATA
REAKKTAERLAAKAEAAAKEAAQLEQEQQDDAVAQPSQVPTATDETST*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR017499Thf1