Ggra7438.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7438.t1
Unique NameGgra7438.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length175
Homology
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BLAST of Ggra7438.t1 vs. uniprot
Match: A0A2V3J6R2 (Thylakoid lumenal 15 kDa protein 1, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6R2_9FLOR)

HSP 1 Score: 120 bits (300), Expect = 3.620e-31
Identity = 97/163 (59.51%), Postives = 107/163 (65.64%), Query Frame = 0 
Query:   12 RIATVVTALAASASLTLLSSHAVSGGGKDYASQNLAGQTFHGSYAGKDFSGGLFRGCDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIEAAILRDTNLXXXXXXXXXXXXXXXXXXXXXXXXXXXALISPESAVVKLCERTDAKGVNSSTGVSTRESLMCPE 174
            RIA  + ALA + SLTL  +HAVSGGGKDYASQN  GQTFHGSY+GKD          XXXXXXX                      +IEAAILRDT+             XXXXXXXXXXXXXXX LISPESAVVKLC+R DAKG+NS+TGVSTRESLMCP+
Sbjct:   18 RIAATIAALATATSLTLSPAHAVSGGGKDYASQNWTGQTFHGSYSGKDXXXXXXXXXXXXXXXXXNTRFFKAELREANMNAVNLSYSSIEAAILRDTDFTDAIMVGSYISDXXXXXXXXXXXXXXXXLISPESAVVKLCQRDDAKGLNSTTGVSTRESLMCPD 180
The following BLAST results are available for this feature:
BLAST of Ggra7438.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J6R23.620e-3159.51Thylakoid lumenal 15 kDa protein 1, chloroplastic ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.160.20.80coord: 34..174
e-value: 1.0E-23
score: 85.0
NoneNo IPR availablePANTHERPTHR47121THYLAKOID LUMENAL PROTEIN TL20.3, CHLOROPLASTICcoord: 56..174
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..13
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..33
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 34..174
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 30..33
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 14..29
NoneNo IPR availableSUPERFAMILY141571Pentapeptide repeat-likecoord: 43..140
NoneNo IPR availableTMHMMTMhelixcoord: 13..35
IPR001646Pentapeptide repeatPFAMPF00805Pentapeptidecoord: 65..98
e-value: 4.8E-9
score: 35.7
coord: 103..138
e-value: 1.5E-4
score: 21.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000102_piloncontigtig00000102_pilon:13603..14127 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7438.t1Ggra7438.t1Gracilaria gracilis GNS1m malemRNAtig00000102_pilon 13603..14127 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7438.t1 ID=Ggra7438.t1|Name=Ggra7438.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=175bp
MSAAQKIAVPRRIATVVTALAASASLTLLSSHAVSGGGKDYASQNLAGQT
FHGSYAGKDFSGGLFRGCDFAGSDLTNTRFFKAELREADMTGANLSYATI
EAAILRDTNLNDAIMVGSYISDSILDAASIENADFSDALISPESAVVKLC
ERTDAKGVNSSTGVSTRESLMCPE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR0016465peptide_repeat