Ggra7419.t2 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7419.t2
Unique NameGgra7419.t2
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length212
Homology
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BLAST of Ggra7419.t2 vs. uniprot
Match: A0A2V3IHA4 (E3 ubiquitin-protein ligase RNF12 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IHA4_9FLOR)

HSP 1 Score: 267 bits (683), Expect = 8.410e-88
Identity = 140/207 (67.63%), Postives = 149/207 (71.98%), Query Frame = 0 
Query:    1 MPAPAPFPSDLADDWQWGPP----------------------------------------------------EPWLARAWDYGAQR-MPLMFDERADWEAFDPAHSPIPARRRLATRPYRPHSRRRVSRLTDFLGFRISRRRAPVARDDDDSLGLTYEELLELDDGNVRCGLSKDELDDLTTFEATKEHMSMDCHICLERFDYGVSL 154
            MPAPAPFPSDL+DDWQWGPP                                                    EPWL+RA+DYGAQR MPLMFDERADWEAFDPA SPIPARRRLATRP+RPHSRRRV+R+TDFL FRISRRRAPV RDDDDSLGLTYEELLELDDGNVRCGLSKDELDDLTTF+ATKEHM+ DCHICL+ FDYGVSL
Sbjct:    1 MPAPAPFPSDLSDDWQWGPPGELPPRLPFPPHXXXXXXXXXXXXXXXXXXPPAPRRHRLLPRGRSRVHTHIPEPWLSRAFDYGAQRGMPLMFDERADWEAFDPAQSPIPARRRLATRPFRPHSRRRVARITDFLAFRISRRRAPVVRDDDDSLGLTYEELLELDDGNVRCGLSKDELDDLTTFDATKEHMNQDCHICLDGFDYGVSL 207
The following BLAST results are available for this feature:
BLAST of Ggra7419.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IHA48.410e-8867.63E3 ubiquitin-protein ligase RNF12 n=1 Tax=Gracilar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000871_piloncontigtig00000871_pilon:1085046..1087409 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7419.t2Ggra7419.t2Gracilaria gracilis GNS1m malemRNAtig00000871_pilon 1085046..1087409 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7419.t2 ID=Ggra7419.t2|Name=Ggra7419.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=212bp
MPAPAPFPSDLADDWQWGPPEPWLARAWDYGAQRMPLMFDERADWEAFDP
AHSPIPARRRLATRPYRPHSRRRVSRLTDFLGFRISRRRAPVARDDDDSL
GLTYEELLELDDGNVRCGLSKDELDDLTTFEATKEHMSMDCHICLERFDY
GVSLREAFLYLRRFHTDSYVHSLQERSSAEYAYLTSLILISLRASISLTT
SKPFLSERVQE*
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