Ggra7393.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7393.t1
Unique NameGgra7393.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length371
Homology
BLAST of Ggra7393.t1 vs. uniprot
Match: A0A2V3IFM9 (Pre-mRNA-splicing factor cwf25 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFM9_9FLOR)

HSP 1 Score: 220 bits (560), Expect = 2.980e-65
Identity = 150/293 (51.19%), Postives = 187/293 (63.82%), Query Frame = 0
Query:    1 MSALKFLSKKSWHTANIKNSEKVWLKEQAEAKEKSRIEELRKQIEEERKLKEAEELEVKAGRLEPEQLLKRRRINWMYEFGPNESKTADKEVDEKECEDVLTGKKEVTLGTLEEEQQRAGPSMIDMENKMREDPLLDIKRQRMQMVRDEQLRELYSRRGGQRSERAEKLKRKQHRQAVRXXXXXXXEARGPVRSQMSTCARDYKEAEDLSLSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFENKKSDYGLRLPERGSQVEVSKRFIPRRKRFDQPPT 293
            MSALKFLSKKSWHTANIKN+EKVWLKEQ EA+EKSRIEELRKQIEEERKLKEAE+LE+K+GRL+P+QLLKRRR+NWMYEFGP++S+   +E  EK+ E+VLTG+KEVTL TLEEE++   PSMID+E KMREDPLL+++R R +M R+ +L   YS +                     XXXXXXXEAR   R+ +S      + + D    P                                            E+K+  YGL +P++GS VEVSK F+PRR+RFDQPP+
Sbjct:    1 MSALKFLSKKSWHTANIKNNEKVWLKEQEEAREKSRIEELRKQIEEERKLKEAEDLEIKSGRLDPQQLLKRRRMNWMYEFGPSQSEAVKEEEKEKKHEEVLTGQKEVTLKTLEEEKEATAPSMIDIETKMREDPLLEMRRNRAEMARERRLLGFYSSKSSTXXXXXXXXXXXXXXXXXXXXXXXXXEAR---RALLSRKTEKDERSIDRERLPARSALGQNTAPSSGTRDIPSRD----------------------EDKR--YGLLVPKQGSGVEVSKEFVPRRRRFDQPPS 266          
BLAST of Ggra7393.t1 vs. uniprot
Match: M2VVF6 (Pre-mRNA-splicing factor CWC25-like protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VVF6_GALSU)

HSP 1 Score: 100 bits (249), Expect = 5.490e-20
Identity = 59/155 (38.06%), Postives = 98/155 (63.23%), Query Frame = 0
Query:    1 MSALKFLSKKSWHTANIKNSEKVWLKEQAEAKEKSRIEELRKQIEEERKLKEAEELEVKAGRLEPEQLLKRRRINWMYEFGPNESKTADKEVDEKECEDVLTGKKEV---------TLGTLEEEQQRAGPSMIDMENKMREDPLLDIKRQRMQMV 146
            MSAL+FL+KKSWHTA +KN+EKVWL E+   +EK RIE     +E+ER  +E   L+V++G+L+P  L ++ R+ W+YE+G  + +     + +K  + +L+ K +V         T G   + +   G + +D+E K+REDPL++IKR+ ++ +
Sbjct:    1 MSALQFLNKKSWHTATLKNNEKVWLAEKKAEEEKKRIEXXXXXLEDERHFQELRRLQVESGQLDPSVLKQQERVEWLYEWGKEKDEEEQYLLGKKSADSLLSQKGKVEEESRLQLLTQGNKPQLEATFGLNRLDLEAKLREDPLMEIKRKEVEAI 155          
BLAST of Ggra7393.t1 vs. uniprot
Match: A0A4P9Z0Z7 (Pre-mRNA splicing factor-domain-containing protein (Fragment) n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9Z0Z7_9FUNG)

HSP 1 Score: 75.1 bits (183), Expect = 1.340e-12
Identity = 55/140 (39.29%), Postives = 80/140 (57.14%), Query Frame = 0
Query:    9 KKSWHTANIKNSEKVWLKEQAEAKEKSRIEELRKQIEEERKLKEAEEL-EVKAGRLEPEQLLKRRRINWMYEFGPNES---KTADKE---VDEKECEDVLTGKKEVTLGTLEEEQQRAGPSMIDMENKMREDPLLDIKRQ 141
            KKSWHT   +N E VW +EQ  A+E  ++E+LRK++EEER+L+E + + E   GR   E      R+ WMY  GP +S   +TAD E   + +K  +D L+G    +    ++   +   S  DM  K+REDPL  IK+Q
Sbjct:    9 KKSWHTGTFRNQEMVWKREQEVAEENKKLEQLRKELEEERQLQELQRIQEASGGRKRTE------RLEWMYAAGPGQSAATRTADLEQYLLGKKRADDKLSGG---STSLFQKAMNQQANSARDMYAKVREDPLFLIKKQ 139          
BLAST of Ggra7393.t1 vs. uniprot
Match: A0A1V9Y7G5 (Pre-mRNA-splicing factor CWC25 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y7G5_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 7.570e-12
Identity = 59/150 (39.33%), Postives = 87/150 (58.00%), Query Frame = 0
Query:    3 ALKFLSKKSWHTANIKNSEKVWLKEQAEAKEKSRIEELRKQIEEERKLKEAEELEVKAGRLEPEQLLKRRRINWMYEFGPNESKTADKEVDEKECEDVLTGKK---EVTLGTLEEEQQRAGP--------SMIDMENKMREDPLLDIKRQ 141
            +L FL+KKSWHT+N+KN EKVW  EQ  A+E+ ++ ELRK IEEE   KE  EL+ K      +++ + +R++WMYE GP  +  A     E+  ED L GK+   E     L++  +R G          + D  +++ EDP++ IKRQ
Sbjct:    2 SLAFLAKKSWHTSNLKNVEKVWKAEQKHAQEEQKLLELRKNIEEEXXXKELRELQAKTT---GDKVNQTQRVDWMYE-GPMAASQA-----ERTAEDYLLGKEYKPEAEKNELKQLSERPGSLYMGNATSKITDTFSRLNEDPMMMIKRQ 142          
BLAST of Ggra7393.t1 vs. uniprot
Match: L1IJQ2 (Cir_N domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IJQ2_GUITC)

HSP 1 Score: 76.3 bits (186), Expect = 8.610e-12
Identity = 66/167 (39.52%), Postives = 99/167 (59.28%), Query Frame = 0
Query:    3 ALKFLSKKSWHTANIKNSEKVWLKEQAEAKEKSRIEELRKQIEEERKLKEAEELEVKAGRLEPEQLLKRRRINWMYEFGPNESKTADKEV------DEKECEDVL-TGKKEVTLGTLEEEQQRAGPSMIDMENKMREDPLLDIK----RQRMQMVRDEQLRELYSRR 158
            +L FL+KKSWHTANI N E+VWLKEQ + +EK + E L+KQ++EER+++E  +L+  AG+        + ++ WMY    N    AD+ +      D+KE ED+    K E       E+Q+ A  +  D  NK+R+DPL  IK    +QR +M+ D  L+EL ++R
Sbjct:    2 SLAFLAKKSWHTANINNQERVWLKEQEKEREKKKTELLQKQMKEEREMEELRQLQG-AGQST------QNKLTWMYAPPINVQADADEYLMGKPKEDDKEDEDLKKVMKNEAVSQAFVEKQKDAISAYRDDMNKIRDDPLFAIKHAEKKQRERML-DNPLKELEAKR 160          
BLAST of Ggra7393.t1 vs. uniprot
Match: A0A0E9NLK5 (Cir_N domain-containing protein n=2 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=A0A0E9NLK5_SAICN)

HSP 1 Score: 75.1 bits (183), Expect = 3.390e-11
Identity = 58/153 (37.91%), Postives = 86/153 (56.21%), Query Frame = 0
Query:    9 KKSWHTANIKNSEKVWLKEQAEAKEKSRIEELRKQIEEERKLKEAEELEVKAG---RLEPEQLLKRRRINWMYEFGPNESKTADKEVDEKECEDVLTGKKEVTLGTLEEEQQR------------------AGPSMIDMENKMREDPLLDIKR 140
            KKSWH   +KN E+VW +EQ++ +E+ RIE++RK+IEEER+LKE ++L+  AG   R+E        R++WMY   P+       E    E E  L GKK +     E+E++R                   G +M DM++K+R+DPLL IK+
Sbjct:    9 KKSWHPLLMKNQERVWKEEQSQLEERKRIEQIRKEIEEERQLKELQDLQAAAGGKKRVE--------RVDWMY-AAPSGGMGGTSE----EMEAYLLGKKRIDGLLKEKEEERLSKASAVAEDRFAGAGGVVGTTMKDMQSKVRDDPLLAIKK 148          
BLAST of Ggra7393.t1 vs. uniprot
Match: A8HPW4 (Predicted protein (Fragment) n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8HPW4_CHLRE)

HSP 1 Score: 71.2 bits (173), Expect = 3.670e-11
Identity = 59/164 (35.98%), Postives = 82/164 (50.00%), Query Frame = 0
Query:    4 LKFLSKKSWHTANIKNSEKVWLKEQAEAKEKSRIEELRKQIEEERKLKEAEELEVKAGRLEPEQLLKRRRINWMYEFGPNESKTADKEVDEKECEDVLTGKKEVTLGTLEEEQQRAGPSMIDMEN---------------------KMREDPLLDIKRQRMQMV 146
            L FL+KK+WH A  +N E+VW +EQA A E  + EELRKQ+EEERK  E  ++ +  G L  E+     R++WMY  G      A     EK  E++LTGK EV L      +Q+AG  +   E                      ++  DPLL  KRQ+ + +
Sbjct:    5 LNFLNKKTWHPARPQNLEEVWKREQAAAAEAKKAEELRKQLEEERKRSEFVQMAMDTGHLRKEE-----RLDWMYASGMQAKVDA-----EKRREEMLTGKAEVELRP----EQQAGTEVSRAEQLANLPSFYAQATPASQNETWMRLNNDPLLPRKRQQQEQL 154          
BLAST of Ggra7393.t1 vs. uniprot
Match: A0A7S0UC09 (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0UC09_HEMAN)

HSP 1 Score: 71.6 bits (174), Expect = 6.600e-11
Identity = 56/148 (37.84%), Postives = 84/148 (56.76%), Query Frame = 0
Query:    3 ALKFLSKKSWHTANIKNSEKVWLKEQAEAKEKSRIEELRKQIEEERKLKEAEELEVKAGRLEPEQLLKRRRINWMY-----------EFGPNESKTADKEVDEKECEDVLTGKKEVTLGTLEEEQQRAGPSMIDMENKMREDPLLDIK 139
            +L FL+KKSWHTAN++N EKVWL EQ + KE  R+E L+KQ+ EER++ E  +++ K    E        ++ WMY           E+   + K  +K  D++E + V+TG+   +    +E+ +  G    D  NK+REDPLL IK
Sbjct:   42 SLAFLAKKSWHTANLQNQEKVWLAEQEKEKESKRVELLKKQMLEEREMDELRKMQGKDPSKE--------KLAWMYAPVGGAVMDSDEYLMGKQKEPEK--DDEELKKVVTGQSVGSNFMAKEKDE--GKEFRDNMNKIREDPLLMIK 177          
BLAST of Ggra7393.t1 vs. uniprot
Match: A0A8J4FIP9 (Uncharacterized protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4FIP9_9CHLO)

HSP 1 Score: 74.3 bits (181), Expect = 7.910e-11
Identity = 57/159 (35.85%), Postives = 84/159 (52.83%), Query Frame = 0
Query:    4 LKFLSKKSWHTANIKNSEKVWLKEQAEAKEKSRIEELRKQIEEERKLKEAEELEVKAGRLEPEQLLKRRRINWMYEFGPNESKTADKEVDEKECEDVLTGKKEVTLGTLEEEQQRAGPSMIDM------------EN----KMREDPLLDIKRQRMQMV 146
            L FL+KK+WH A  +N E+VW +EQ  A E  + EELRKQ+EEERK  E  ++ +  G L  E+     R++WMY  G    + A     EK  ED+LTGK EV L   ++ Q+ +    + +            +N    ++  DPL  IKRQ+ + +
Sbjct:    5 LNFLNKKTWHPARPQNLEEVWKREQKAAAEAKKAEELRKQLEEERKRSEFVQMAMDTGHLRKEE-----RLDWMYGSGLQAKQDA-----EKRREDMLTGKTEVVLAPEQQAQETSRAEQVALLPSFYASATPASQNETWLRLNNDPLFAIKRQQQEQL 153          
BLAST of Ggra7393.t1 vs. uniprot
Match: A0A8J4B0Q7 (Uncharacterized protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4B0Q7_9CHLO)

HSP 1 Score: 73.6 bits (179), Expect = 1.420e-10
Identity = 57/159 (35.85%), Postives = 83/159 (52.20%), Query Frame = 0
Query:    4 LKFLSKKSWHTANIKNSEKVWLKEQAEAKEKSRIEELRKQIEEERKLKEAEELEVKAGRLEPEQLLKRRRINWMYEFGPNESKTADKEVDEKECEDVLTGKKEVTLGTLEEEQQRAGPSMIDM------------EN----KMREDPLLDIKRQRMQMV 146
            L FL+KK+WH A  +N E+VW +EQ  A E  + EELRKQ+EEERK  E  ++ +  G L  E+     R++WMY  G    + A     EK  ED+LTGK EV L   +  Q+ +    + +            +N    ++  DPL  IKRQ+ + +
Sbjct:    5 LNFLNKKTWHPARPQNLEEVWKREQKAAAEAKKAEELRKQLEEERKRSEFVQMAMDTGHLRKEE-----RLDWMYGSGLQAKQDA-----EKRREDMLTGKTEVALAPEQRAQETSRAEQVALLPTFYASATPASQNETWLRLNNDPLFAIKRQQQEQL 153          
The following BLAST results are available for this feature:
BLAST of Ggra7393.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IFM92.980e-6551.19Pre-mRNA-splicing factor cwf25 n=1 Tax=Gracilariop... [more]
M2VVF65.490e-2038.06Pre-mRNA-splicing factor CWC25-like protein n=1 Ta... [more]
A0A4P9Z0Z71.340e-1239.29Pre-mRNA splicing factor-domain-containing protein... [more]
A0A1V9Y7G57.570e-1239.33Pre-mRNA-splicing factor CWC25 n=1 Tax=Thraustothe... [more]
L1IJQ28.610e-1239.52Cir_N domain-containing protein n=1 Tax=Guillardia... [more]
A0A0E9NLK53.390e-1137.91Cir_N domain-containing protein n=2 Tax=Saitoella ... [more]
A8HPW43.670e-1135.98Predicted protein (Fragment) n=1 Tax=Chlamydomonas... [more]
A0A7S0UC096.600e-1137.84Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
A0A8J4FIP97.910e-1135.85Uncharacterized protein n=2 Tax=Volvox reticulifer... [more]
A0A8J4B0Q71.420e-1035.85Uncharacterized protein n=1 Tax=Volvox africanus T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 27..57
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 308..327
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 236..291
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 200..222
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 125..191
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 106..370
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 329..370
NoneNo IPR availablePANTHERPTHR16196CELL CYCLE CONTROL PROTEIN CWF25coord: 3..360
IPR019339CBF1-interacting co-repressor CIR, N-terminal domainSMARTSM01083Cir_N_3coord: 11..47
e-value: 8.5E-10
score: 48.5
IPR019339CBF1-interacting co-repressor CIR, N-terminal domainPFAMPF10197Cir_Ncoord: 11..47
e-value: 3.6E-12
score: 46.3
IPR022209Pre-mRNA splicing factorPFAMPF12542CWC25coord: 71..147
e-value: 1.9E-8
score: 35.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000871_piloncontigtig00000871_pilon:972643..973755 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7393.t1Ggra7393.t1Gracilaria gracilis GNS1m malemRNAtig00000871_pilon 972643..973755 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7393.t1 ID=Ggra7393.t1|Name=Ggra7393.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=371bp
MSALKFLSKKSWHTANIKNSEKVWLKEQAEAKEKSRIEELRKQIEEERKL
KEAEELEVKAGRLEPEQLLKRRRINWMYEFGPNESKTADKEVDEKECEDV
LTGKKEVTLGTLEEEQQRAGPSMIDMENKMREDPLLDIKRQRMQMVRDEQ
LRELYSRRGGQRSERAEKLKRKQHRQAVREERRRRREARGPVRSQMSTCA
RDYKEAEDLSLSPRRESSETARRHSTTFAGSYKEAEDLSLSHRHESNEIV
GRHAPAFENKKSDYGLRLPERGSQVEVSKRFIPRRKRFDQPPTYRSAPAR
PRRRFDQPPGFTSNSERRATNYVQDDTATMLDRMRRDAEQIDIERKMRTE
RHESDDRDSEIVSRKRKLRE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019339CIR_N_dom
IPR022209CWC25