Ggra7392.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7392.t1
Unique NameGgra7392.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length692
Homology
BLAST of Ggra7392.t1 vs. uniprot
Match: A0A2V3IHD2 (Protein transport protein SEC16A-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IHD2_9FLOR)

HSP 1 Score: 644 bits (1661), Expect = 4.500e-203
Identity = 407/826 (49.27%), Postives = 497/826 (60.17%), Query Frame = 0
Query:    1 MIDRKLYMSVLCDFAKVNLHEGSALQTLCLSLSENDSEITRRITSPAGLTEWRKNVGMLLTSGASITRDSEKSKRFMSLIDQVGDALLAQNEDVVGSHVCYLLSGRLDSLDRNQICLLGANSKTTPGRPGSFGSPAAILQSIVFEATINARNGKTCPHILPFRLLLALEIASVGRPEVALAHCNSISKEVRAIFESGNSVAAQLFTSPFLSCLESFEHQLRINLGVQEKGEKQTRLSALRQSLTSVFARRSKDQTGKQSSQELGSQNTMAGSQPFVPTPPVGPGHIHAP-SDHVHANHPPHLSLDSQRAGIFNPAQISQLPNQANEAFDQSAKKEKSGNEKWNYLVQKTVGLIAPADYDLSPPPPARAPPAVFCGQGHPSPFGLDGGAGTRAPGQGLTPSHMRSASVGALPSEYFSSS--------------------------------------------------------------------------------------------------------------------------------QFASKTERGRWIIEGEDPDEXXXXXXXXXXXXNMFSSDGSNVQTSASYDLLPNPSNNDHNTTALLRSQSAQDARDMNSFNMS-NSHDQIATPFNPLSSYPGSLDNSVGGDDGSATSVASAASAPVPYSAVPSFTASSTG----NSNKYRAGGGRRSNRRAYVDTFNKGRPPAPMSTIPTPARPAVPAFGGVSSASGGGYKIFTPTPVPSSSTGNSDVGHGANSSASVVETSDPMPASGSDISSSQNAPMTNSSHSDALPPKPPSYTSS-LGSGRQPRMMA 691
            M+D KLY S+LCD+AK  L EGSALQTLC SL+END+EITRRITSPAGL EWRKNVG+LLTSGAS+T    +  RF+ LI+QVGDALL Q+ D+VG+HVCYLLSGRL  LD   ICLLGAN  T PGRP S GSP +ILQS+V+EA +NAR+G   PH+LPFRLLLA EIASVG P++ALAHC+SISK+VR IFES NS  A  FT+PFLS LESF+ +LR +LG++E+    T+L+AL +SL+SVF+R SK++    S+    SQ+ +  +  F  T  +     +   S  +  NHPPHLS+DSQ    +N  Q +   NQ +    Q+ K EKSG EKW+  V KTVGLIAPADYDLSPPPP+R PP++     HP+P GLDGG+G     QGL P+HMRS+SVGA+PS +F+S+                                                                                                                                +F    +RGRW+IEGE+P EXXXXXXXXXXXX MF  +G+ VQ S SYD LP+   + HN   LLRSQSAQDA   N FN     H Q      P  S PGSLDNS GGDDGSA SVASAASAPVPYSA  S   SS+G    +SNKYR  G  R  RRAYVDTFNK +P      +PTPARPAVPA+GG+++A+GGGY IFTPTP+PS+STG+S++  GA+S+ SVVETSD +  S SD SSS N   +N         KPP++ S    +GRQPRMMA
Sbjct: 2123 MVDTKLYTSILCDYAKNILQEGSALQTLCFSLAENDAEITRRITSPAGLDEWRKNVGILLTSGASVTTSKARETRFLHLIEQVGDALLTQHADMVGAHVCYLLSGRLGRLDPKGICLLGANPSTPPGRPRSLGSPGSILQSVVYEAAMNARSGAAFPHLLPFRLLLAQEIASVGHPDIALAHCDSISKQVRVIFESRNSAIAAQFTAPFLSSLESFDQRLRAHLGLREEVGNLTKLTALGKSLSSVFSRASKERHSIPSTSADRSQDHLPSTASFATTTAMPYEERNTGVSVSMPFNHPPHLSVDSQWGAGYNSLQPAGFINQNSNTNTQATKIEKSGKEKWDQFVSKTVGLIAPADYDLSPPPPSRVPPSMAQ---HPAPIGLDGGSGLMTNMQGLAPNHMRSSSVGAIPSAFFNSTPALTVPKNGGMPHSGSQESGSEKSVPLAVVGKSGHAVLNGVPLQKATREENNDAIVHRRSASDMTLQSQTSEKKPPLHPKKPARASNVTDTSATTDKPTQKKGWRERLKEKLTATFGGPPRAHMGEENKFVFDKKRGRWVIEGEEPTEXXXXXXXXXXXXXMFGGEGNRVQASLSYDPLPSTEQSAHNVPTLLRSQSAQDALGSNGFNYPYTEHTQAPASLKPPFSGPGSLDNSFGGDDGSAASVASAASAPVPYSAGSSSKISSSGTNNHDSNKYRRVG--RPGRRAYVDTFNKSKPSMSTPALPTPARPAVPAYGGITAATGGGYNIFTPTPIPSTSTGDSNMAQGASSTTSVVETSDQLTTSLSDTSSSHNGLASNQPTGHVQSLKPPAHPSGRFSTGRQPRMMA 2943          
BLAST of Ggra7392.t1 vs. uniprot
Match: R7QQG8 (Sec16_C domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QQG8_CHOCR)

HSP 1 Score: 302 bits (774), Expect = 1.420e-84
Identity = 194/454 (42.73%), Postives = 272/454 (59.91%), Query Frame = 0
Query:    3 DRKLYMSVLCDFAKVNLHEGSALQTLCLSLSENDSEITRRITSPAGLTEWRKNVGMLLTSGAS-ITRDSEKSKRFMSLIDQVGDALLAQNEDVVGSHVCYLLSGRLDSLDRNQICLLGANSKTTPGRPGSFGSPAAILQSIVFEATINARNGKTCPHILPFRLLLALEIASVGRPEVALAHCNSISKEVRAIFESG-NSVAAQLFTSPFLSCLESFEHQLRINLGVQEKGEKQTRLSALRQSLTS-VFARRSKDQTGKQSSQELGSQNTMAGSQPFVPTPPVGPGHIH-------------APSDH--------VHANHPPHLSLD-----SQRAGIFNPAQISQLPNQANEAFDQSAK---KEKSGNEKWNYLVQKTVGLIAPADYDLSPPPPARAP-PAVFCGQGHPSPFGLDGGAGTRAPGQGLTPSHMRSASVGALPSEYFSSSQFASKT 423
            D+ LY S++ DFAK +L++GSALQTL  S++END+EI ++ TS AGL EWRK V MLLT+  S +  D ++ +RF+ LIDQVG+AL++Q  D+VG HVCYLLSGR+  LD +   LLGA+SK   G P S GS AAILQS+V+EA + A++GK+ PH+LPFRL+LA EIA+VGR ++AL+HC S++  VR +F+SG N VA++  T PFL+ LES + +LR +LG+    E+  +L+A+ +SL++ VF R S       S   + S +  + + P    PP    H +             AP  H          ++HPP+         S    I    Q+  L    +  +D S     +E+SG+++WN  V KT+G++APA  DLSPPP    P P+   G     P GL    G+RAPG  L  SHMRS S+G +P+     SQ A  T
Sbjct: 1677 DQTLYKSLITDFAKKSLNDGSALQTLFFSMAENDAEILQKATSTAGLREWRKTVTMLLTNYRSAMEADPQRGERFLRLIDQVGEALISQLGDIVGGHVCYLLSGRISILDSSSTVLLGADSKRPVGCPRSLGSAAAILQSLVYEAIVCAQSGKSFPHLLPFRLVLAEEIAAVGRSDIALSHCESVAAGVRTMFDSGRNDVASEFLTLPFLAGLESLDQRLRAHLGLSHGTERVGKLTAMGRSLSAAVFNRTSATPKPTPSRTPVESASGGSTNNPSPDVPPHQFSHANMYSSRAPPTYSNQAPFAHDVNGSAMIATSHHPPYGGKGVSQGPSPEQQIPGNLQVPALSVPHSSGYDSSRSGPGQEESGSKRWNEFVSKTIGVLAPAHGDLSPPPRTGQPIPSELHGV---PPMGLGLDTGSRAPGHELDASHMRSQSMGNVPAAMPQMSQAAFVT 2127          
BLAST of Ggra7392.t1 vs. uniprot
Match: I1H207 (Protein transport protein sec16 n=2 Tax=Brachypodium distachyon TaxID=15368 RepID=I1H207_BRADI)

HSP 1 Score: 61.2 bits (147), Expect = 6.860e-6
Identity = 91/399 (22.81%), Postives = 168/399 (42.11%), Query Frame = 0
Query:    5 KLYMSVLCDFAKVNLHEGSALQTLCLSLSENDSEITRRIT------------------SPAG-LTEWRKNVGMLLTSGASITRDSEKSKRFMSLIDQVGDALLAQNEDVVGSHVCYLLSG-RLDSLDRN-QICLLGANSKTTPGRPGSFGSPAAILQSIVFE-ATINARNGKTCPHILPFRLLLALEIASVGRPEVALAHCNSISKEVRAIFESGNSVAAQLFTSPFLSCLESFEHQLRINLGVQEKGEKQTRLSALRQSLTSVFARRSKDQTGKQSSQELGSQNTMAGSQPFV-PTPPVGPGH------IHAP--SDHVHANH---PPHLSLDSQ------------RAGIFNPA----QISQLPNQANEAFDQSAKKEKSGNEKWNYLVQKTVGLIA 353
            K Y   +   A  +   GS L+TLCL ++   +++                       +P G L +W++N+ ++  +         ++K    +I  +GD L  +  +V  +H CYL++   +D+     ++CLLGA+    P    +F SP AI ++ ++E A +   +        P++L+ A  +A VG+   +L +C +  K ++A   SG +   + +   F     S E ++R +    ++G   T L+  +  +  +F         K  S+ +G+Q T     P   P PP+  G         AP  ++ V+ N    P   S   Q            R G  N +      ++ P Q   + D       SGN ++ +L+QKT+GL++
Sbjct:  910 KFYADTVKKMAYSHFMSGSPLRTLCLLIAGQPADVFHAENPIDANYGTLHRPQEAAEGTPKGMLDDWQQNLAIITAN---------RTKGDDLVITHLGDCLWKEKNEVAAAHSCYLVAELNIDAYSETARMCLLGADHLRCPR---TFTSPEAIQRTELYEYAKVLGNSQYILLPFQPYKLVYAYMLAEVGKISDSLRYCQASLKVLKA---SGRAPELEAWKQLF----SSLEERIRTH----QQGGYGTNLAPAK-LVGKLFT-----SLDKSLSRMMGTQPTSL--PPLAQPMPPLAQGSSTERDLYSAPPATNFVNNNQSATPMSFSASEQSMSDMTGNSGPDRKGTHNRSVSEPDFNRAPQQGTRS-DNPQSTSGSGNSRFGWLLQKTMGLVS 1276          
The following BLAST results are available for this feature:
BLAST of Ggra7392.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IHD24.500e-20349.27Protein transport protein SEC16A-like n=1 Tax=Grac... [more]
R7QQG81.420e-8442.73Sec16_C domain-containing protein n=1 Tax=Chondrus... [more]
I1H2076.860e-622.81Protein transport protein sec16 n=2 Tax=Brachypodi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024298Ancestral coatomer element 1, Sec16/Sec31PFAMPF12931Sec16_Ccoord: 3..203
e-value: 3.2E-13
score: 50.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 614..691
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 424..526
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 367..404
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 247..274
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 616..685
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 451..526
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 247..315
IPR024880COPII coat assembly protein, Sec16PANTHERPTHR13402RGPR-RELATEDcoord: 3..686

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000871_piloncontigtig00000871_pilon:959395..961860 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7392.t1Ggra7392.t1Gracilaria gracilis GNS1m malemRNAtig00000871_pilon 959395..961860 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7392.t1 ID=Ggra7392.t1|Name=Ggra7392.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=692bp
MIDRKLYMSVLCDFAKVNLHEGSALQTLCLSLSENDSEITRRITSPAGLT
EWRKNVGMLLTSGASITRDSEKSKRFMSLIDQVGDALLAQNEDVVGSHVC
YLLSGRLDSLDRNQICLLGANSKTTPGRPGSFGSPAAILQSIVFEATINA
RNGKTCPHILPFRLLLALEIASVGRPEVALAHCNSISKEVRAIFESGNSV
AAQLFTSPFLSCLESFEHQLRINLGVQEKGEKQTRLSALRQSLTSVFARR
SKDQTGKQSSQELGSQNTMAGSQPFVPTPPVGPGHIHAPSDHVHANHPPH
LSLDSQRAGIFNPAQISQLPNQANEAFDQSAKKEKSGNEKWNYLVQKTVG
LIAPADYDLSPPPPARAPPAVFCGQGHPSPFGLDGGAGTRAPGQGLTPSH
MRSASVGALPSEYFSSSQFASKTERGRWIIEGEDPDEEEDVPPPPPDDDN
MFSSDGSNVQTSASYDLLPNPSNNDHNTTALLRSQSAQDARDMNSFNMSN
SHDQIATPFNPLSSYPGSLDNSVGGDDGSATSVASAASAPVPYSAVPSFT
ASSTGNSNKYRAGGGRRSNRRAYVDTFNKGRPPAPMSTIPTPARPAVPAF
GGVSSASGGGYKIFTPTPVPSSSTGNSDVGHGANSSASVVETSDPMPASG
SDISSSQNAPMTNSSHSDALPPKPPSYTSSLGSGRQPRMMA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024298ACE1_Sec16_Sec31
IPR024880Sec16