Ggra739.t2 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra739.t2
Unique Name	Ggra739.t2
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	465

Homology

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BLAST of Ggra739.t2 vs. uniprot
Match: A0A2V3IK91 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IK91_9FLOR)

HSP 1 Score: 632 bits (1630), Expect = 7.780e-224
Identity = 330/480 (68.75%), Postives = 359/480 (74.79%), Query Frame = 0

Query:   49 LDPPPAITSSSVSSPSAPHSDGPDEVDELLDGIDRVRIDDLWQTPRWHCRYCCPQHNHAPLMHH--------------------------------------------AHDFPRMFKVYPCRTRDQCLAAGTAPDCFYYHSPDTDRRRANVAMYKPHMCRFIDDTAGCRKADRCPFSHNDFERRYHPDRFGKETCRDYLRGDCPRRYCTFRHEVSSNVQVSLLHMQQMSDKELLQLVLKIPEAQGRALCEKLLRRFGHAKKHSGWRLQGFDPRGRDDQKIKFVGARVDQVKRALKTAGEKKWASTLKTSSLRDMMSGVRKVAEEVRERCRADERYGATATDGGSQEVHRLIRAIFSNTNWSCHSQEGDNPFLVTPENQNDAMTALEKLVHIVVIC--NQDKQQAALSNVENNGAVSNHHKTN-------KRAGAAAGADKR-----------KDSTREEQPHNVVSTLWAHPSSLGQLTA 464
            +DPPPAITSSSVSSPSAPHSDGPDEVDELLDGIDRVRIDDLWQTPR       P    A L                                                HDFPR+FKVYPCRTR+QCLAAGTAPDCF+YHS +TDRRR NV++YKPHMCRFIDD AGCRKADRCPFSHNDFERRYHPDRFGKETCRDYLRGDCPRRYCTFRHEVS++VQ+SL HM QMSDKELLQLVLK+PEAQGRALCEKLLRRFGHAKKHSGW+LQGFDPRGR++QK++FV ARV+QVKR+LK AGEKKWA TLKTSSLRDMMSGVRKVAEEVRERCRADERYGA+ +DGGSQEV RLIRAIFSNTNWSCHSQEGDNPFLVTPENQNDAM+ALEKLVHIVV    N D   AA +N  +   V N + +N       K+ G                   K +  + Q H+VVSTLWA PSSLG LTA
Sbjct:    1 MDPPPAITSSSVSSPSAPHSDGPDEVDELLDGIDRVRIDDLWQTPRHLDFIPTPAPFRAGLFAPPRKDGIAAIAAPTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTTHDFPRLFKVYPCRTREQCLAAGTAPDCFFYHSTNTDRRRLNVSLYKPHMCRFIDDAAGCRKADRCPFSHNDFERRYHPDRFGKETCRDYLRGDCPRRYCTFRHEVSTHVQMSLAHMHQMSDKELLQLVLKMPEAQGRALCEKLLRRFGHAKKHSGWKLQGFDPRGREEQKVRFVTARVEQVKRSLKAAGEKKWACTLKTSSLRDMMSGVRKVAEEVRERCRADERYGASGSDGGSQEVQRLIRAIFSNTNWSCHSQEGDNPFLVTPENQNDAMSALEKLVHIVVRSHSNNDSNHAAGANTNDENVVKNANDSNSNMERSTKKVGVTXXXXXXXXXXXRSDGWSKAAAAQAQRHDVVSTLWACPSSLGHLTA 480

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BLAST of Ggra739.t2 vs. uniprot
Match: A0A1X6NIT3 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NIT3_PORUM)

HSP 1 Score: 157 bits (398), Expect = 2.690e-41
Identity = 95/248 (38.31%), Postives = 135/248 (54.44%), Query Frame = 0

Query:  172 CRKADRCPFSHNDFERRYHPDRFGKETCRDYLRGDCPRRYCTFRHEVSSNVQVSLLHMQQMSDKELLQLVLKIPEAQGRALCEKLLRRFGHAKKHSGWRLQGFDPRGRDDQKIKFVGARVDQVKRALKTAGEKKWASTLKTSSLRDMMSGVRKVAEEVRERCRADERYGATATDGG------------------------SQEVHRLIRAIFSNTNWSCHSQE---GDNPFLVTPENQNDAMTALEKL 392
            CR  D C  +HN +E R+HP R  + TCRD+++G C R YC++ HEV   V   L   + + ++E +Q VL++PEA   ++ +KL RR   +K+++GW L+G   R  DD     +  RV  VK  L++AG  K AS LKT++LRDMM+ VRKVAEEVRE  R                                     S  +  L+R IF+NTNWS H++E    D PF V+  NQ+DA+  LE++
Sbjct:    6 CRFGDGCHHAHNRWEVRFHPSRVHQTTCRDWIKGACARSYCSYVHEVEPKVSSFLTLWESLDEREQVQAVLRMPEAMAASMMQKLQRRAAGSKRNNGWVLEGMTRRP-DDPVFVGLATRVGIVKARLRSAGHTKLASLLKTTTLRDMMNSVRKVAEEVRESGRGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSGSMQSLVRGIFTNTNWSMHAEEHGESDTPFRVSGANQSDAVAKLERV 252

The following BLAST results are available for this feature:

BLAST of Ggra739.t2 vs. uniprot

BLAST of Ggra739.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3IK91	7.780e-224	68.75	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]
A0A1X6NIT3	2.690e-41	38.31	Uncharacterized protein n=1 Tax=Porphyra umbilical...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 193..218 e-value: 0.58 score: 18.2 coord: 157..184 e-value: 0.82 score: 16.9
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 157..185 score: 10.511662
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 193..219 score: 10.877837
None	No IPR available	GENE3D	3.30.1370.210		coord: 156..221 e-value: 4.5E-8 score: 35.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 410..455
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 427..444
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 155..189

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000204_pilon	contig	tig00000204_pilon:60170..61629 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra739.t2	Ggra739.t2	Gracilaria gracilis GNS1m male	mRNA	tig00000204_pilon 60170..61629 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra739.t2 ID=Ggra739.t2|Name=Ggra739.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=465bp
MSTTHPPRRPADHPRIAASSAMSSARPPSVWPASPPVPRRVPPIAVPHLD
PPPAITSSSVSSPSAPHSDGPDEVDELLDGIDRVRIDDLWQTPRWHCRYC
CPQHNHAPLMHHAHDFPRMFKVYPCRTRDQCLAAGTAPDCFYYHSPDTDR
RRANVAMYKPHMCRFIDDTAGCRKADRCPFSHNDFERRYHPDRFGKETCR
DYLRGDCPRRYCTFRHEVSSNVQVSLLHMQQMSDKELLQLVLKIPEAQGR
ALCEKLLRRFGHAKKHSGWRLQGFDPRGRDDQKIKFVGARVDQVKRALKT
AGEKKWASTLKTSSLRDMMSGVRKVAEEVRERCRADERYGATATDGGSQE
VHRLIRAIFSNTNWSCHSQEGDNPFLVTPENQNDAMTALEKLVHIVVICN
QDKQQAALSNVENNGAVSNHHKTNKRAGAAAGADKRKDSTREEQPHNVVS
TLWAHPSSLGQLTA*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000571	Znf_CCCH
IPR036855	Znf_CCCH_sf