Ggra7388.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7388.t1
Unique NameGgra7388.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length253
Homology
BLAST of Ggra7388.t1 vs. uniprot
Match: A0A2V3J1L1 (RuBisCo_chap_C domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1L1_9FLOR)

HSP 1 Score: 279 bits (714), Expect = 1.380e-91
Identity = 141/263 (53.61%), Postives = 192/263 (73.00%), Query Frame = 0
Query:    1 MVAPKHIRRSSEIKRLERQLEELRALREKLANKNTAAVSDSKRAEIVAEAESAPRPPQPTFTASK------PSTDLNIGK-----HNEGSRFLSISSVESEEFPTRILTIAGIVPELSTAQFQSTPSVLMNKRPERGNLVISKLPEDYHGEIMAMPGSEVLDRCGDPVIILADQTEVSAISLPVAEGDFVALVVDRDMTKKTFENNTFYVWDVQGHIRVGWTDEEPHPSQAKCVGEVIFGIMEIKSDLRKLKSCWEEENETYA 252
            MVAPKH+RRS+EIKRL+RQLEELR LREKLA          K  E  A+A+ +P    PT  +S       P +D  + K     H+E SRFLS+ +++S+E+  RIL+IAG VP L+T +F++   +L+NKRPE+GN++I+ LPE + GEIMA+PGS+VL  C DP++ILAD  E+SA+ LP+ E + VAL+V+R++T++TF N +FY WDVQG I+VGW + EP PSQA CVG V++G++EIK +LRK KSCWEEENETY+
Sbjct:    1 MVAPKHVRRSNEIKRLQRQLEELRELREKLAA--------DKETEAQAKADKSPTDGMPTPLSSSSRPAVAPKSDARVDKFLVRKHDEQSRFLSLMNIDSQEYAPRILSIAGTVPGLTTNEFKAKKPLLLNKRPEKGNVIITSLPEGFDGEIMALPGSDVLHACRDPIVILADVGEISAVELPITEDENVALLVERNVTRETFNNKSFYAWDVQGQIKVGWVESEPDPSQAICVGRVVYGMVEIKPELRKTKSCWEEENETYS 255          
BLAST of Ggra7388.t1 vs. uniprot
Match: R7QT97 (RuBisCo_chap_C domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QT97_CHOCR)

HSP 1 Score: 226 bits (575), Expect = 3.850e-70
Identity = 115/256 (44.92%), Postives = 166/256 (64.84%), Query Frame = 0
Query:    1 MVAPKHIRRSSEIKRLERQLEELRALREKLANKNTAAVSDSKRAEIVAEAESAPRPPQPTFTASKPSTDLNI----GKHNEGSRFLSISSVESEEFPTRILTIAGIVPELSTAQFQSTPSVLMNKRPERGNLVISKLPEDYHGEIMAMPGSEVLDRCGDPVIILADQTEVSAISLPVAEGDFVALVVDRDMTKKTFENNTFYVWDVQGHIRVGWTDEEPHPSQAKCVGEVIFGIMEIKSDLRKLKSCWEEENETYA 252
            M+A ++++ S EIKRL+++LEELRA+RE++A + +     +                QP      PS + N+    GKH EGSRFLS+S+VE+EE   RILT+AG VPEL+  +F  TP VL N+ P  GN+ ++ LP  Y G+I+AM G EV+ +C DPV +L    E+SA  L +++   +A+VV+R+++K  F+   FY W V G ++VGW  E P P  AKC+G+V+FG++E K +LRK KSCWEEENETY+
Sbjct:   34 MIARENVQGSEEIKRLQKKLEELRAMRERIAKEKSVPPPQAXXXXXXXXX-------QPAVQNVTPSNNTNLSFALGKHGEGSRFLSMSAVEAEEHFPRILTVAGRVPELTVKEFMETPPVLQNRPPNAGNMFVTMLPPGYQGQIIAMQGLEVIAKCMDPVAVLIPAEELSAAQLSISDDADIAVVVERNVSKLDFDKTKFYAWAVGGRVKVGWVKEMPSPDNAKCLGQVVFGMLEEKEELRKKKSCWEEENETYS 282          
BLAST of Ggra7388.t1 vs. uniprot
Match: A0A2V3IG29 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IG29_9FLOR)

HSP 1 Score: 121 bits (304), Expect = 4.030e-30
Identity = 76/196 (38.78%), Postives = 118/196 (60.20%), Query Frame = 0
Query:   14 KRLERQLEELRALREKLANKNTAAVSDSKRAEIVAEAESAPRPPQPTFTASK------PSTDLNIG-----KHNEGSRFLSISSVESEEFPTRI------LTIAGIVPELSTAQFQSTPSVLMNKRPERGNLVISKLPEDYHGEIMAMPGSEVLDRCGDPVIILADQTEVSAISLPVAEGDFVALVVDRDMTKKTF 192
            K L+RQLEELR LREK A          K  E  A+A+ +P    PT  +S       P++D  +      KH+E SRFLS+ +++S+E+  RI      L+I+G V  L+T + ++   +L+NKR E+ N++I+  PE +  E +A+PGS+VL    D ++ILAD  E++A+ LP+ E + VA +V+R++T KTF
Sbjct:   10 KHLQRQLEELRELREKQAA--------DKETEAQAKADKSPTDEMPTPLSSSSRPALAPNSDARVDIFLVRKHDEQSRFLSLMNIDSQEYAPRIEYAPRILSISGTVLGLTTNERKAKKPLLLNKRQEKENVIITSPPEVFDSESIALPGSDVLYAFRDLIVILADVVEITAVELPITENEIVAFLVERNVTSKTF 197          
BLAST of Ggra7388.t1 vs. uniprot
Match: hypothetical protein n=1 Tax=Phormidium tenue TaxID=126344 RepID=UPI00174765B7 (hypothetical protein n=1 Tax=Phormidium tenue TaxID=126344 RepID=UPI00174765B7)

HSP 1 Score: 57.8 bits (138), Expect = 4.300e-6
Identity = 43/147 (29.25%), Postives = 75/147 (51.02%), Query Frame = 0
Query:   68 TDLNIGKHNEGSRFLSISSVESEEFPTRILTIAGIVPELSTAQFQSTPSVLMNKRPERGNLVISKLPEDYHGEIMAMPGSEVLDRCGDPVIILADQTEVSAISLPVAEGDFVALVVDRDMTKKTFENNTFYVWDVQGHIRVGWTDEE 214
            TD  + +     R +    +ES E   R++ + G +P L+ A  ++ P V     PE G   I K      G  +A+PG +V+    DPV+ILAD T++     P  E + V ++VDR +  + ++  +++V D  G +++ W+D E
Sbjct:  195 TDFTVTRSRPAPR-IPFYRLESAEEQPRVIPVVGQLP-LTIADLKAAPLV----EPE-GRFNIVKFSGT--GAWVALPGWQVVINAEDPVMILADTTQLPV--PPEGESEEVLILVDRSL--RQWDAESYFVLDDAGQLQIDWSDTE 328          
The following BLAST results are available for this feature:
BLAST of Ggra7388.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3J1L11.380e-9153.61RuBisCo_chap_C domain-containing protein n=1 Tax=G... [more]
R7QT973.850e-7044.92RuBisCo_chap_C domain-containing protein n=1 Tax=C... [more]
A0A2V3IG294.030e-3038.78Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
hypothetical protein n=1 Tax=Phormidium tenue TaxID=126344 RepID=UPI00174765B74.300e-629.25hypothetical protein n=1 Tax=Phormidium tenue TaxI... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 6..40
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..68
IPR040858Rubisco accumulation factor 1, C-terminalPFAMPF18087RuBisCo_chap_Ccoord: 87..228
e-value: 3.3E-9
score: 36.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000871_piloncontigtig00000871_pilon:948243..949001 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7388.t1Ggra7388.t1Gracilaria gracilis GNS1m malemRNAtig00000871_pilon 948243..949001 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7388.t1 ID=Ggra7388.t1|Name=Ggra7388.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=253bp
MVAPKHIRRSSEIKRLERQLEELRALREKLANKNTAAVSDSKRAEIVAEA
ESAPRPPQPTFTASKPSTDLNIGKHNEGSRFLSISSVESEEFPTRILTIA
GIVPELSTAQFQSTPSVLMNKRPERGNLVISKLPEDYHGEIMAMPGSEVL
DRCGDPVIILADQTEVSAISLPVAEGDFVALVVDRDMTKKTFENNTFYVW
DVQGHIRVGWTDEEPHPSQAKCVGEVIFGIMEIKSDLRKLKSCWEEENET
YA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR040858Raf1_C