Ggra7384.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7384.t1
Unique NameGgra7384.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length228
Homology
BLAST of Ggra7384.t1 vs. uniprot
Match: A0A2V3J1C2 (Ribonuclease P protein subunit p38 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1C2_9FLOR)

HSP 1 Score: 244 bits (622), Expect = 1.900e-78
Identity = 126/215 (58.60%), Postives = 160/215 (74.42%), Query Frame = 0
Query:   11 SKIQKKKVWGSKQVLASPFALTFPSANTGTKEAVLKIFAQQFPEPFAKREPRPSRKASTREIFRSEEKGGQKSDWRSRKKPIRLLCGINEVTRALEKKRVELVVVSRDVTPAFLITHIPVLCFLNCANLVVLSGNGTELGHILGTRRLLALCILKQTPENSEKSQFIDLLVEKLKPYSSTLGYPWLAAIRGRTTPCLPDPSMVPHKTKKETLAPL 225
            +K QKKKVWGSKQVLASPFA T          AVL+I  Q FP PF  R+ RPS+ +   +  R +++   ++      KP R+LCGINEVTRALEK RVE+V+VSRDVTPAFL+THIP+LCFL  A LVVL G+GTELGH+LGT+RLLA  +L++T ++S+ ++  DLL+E+L P+S+ L YPWLAAI+G+  P LPDP M+PHKTKKE LAPL
Sbjct:   15 AKSQKKKVWGSKQVLASPFASTXXXXXXXXXXAVLQIIVQLFPTPFITRKTRPSKASQDSDRARKDDQHDTRNS-----KPPRMLCGINEVTRALEKNRVEVVIVSRDVTPAFLVTHIPILCFLTSAKLVVLPGDGTELGHLLGTKRLLAFGLLRKTSDHSKDTELADLLIERLVPHSTPLEYPWLAAIKGKKVPTLPDPVMIPHKTKKEILAPL 224          
BLAST of Ggra7384.t1 vs. uniprot
Match: R7QAC3 (Ribosomal_L7Ae domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QAC3_CHOCR)

HSP 1 Score: 191 bits (484), Expect = 1.320e-57
Identity = 107/216 (49.54%), Postives = 148/216 (68.52%), Query Frame = 0
Query:    7 KGLSSKIQKKKVWGSKQVLASPFALTFPSANTGTKEAVLKIFAQQFPEPFAKREPRPSRKASTREIFRSEEKGGQKSDWRSRKKPIRLLCGINEVTRALEKKRVELVVVSRDVTPAFLITHIPVLCFLNCANLVVLSGNGTELGHILGTRRLLALCILKQTPENSEKSQFIDLLVEKLKPYSSTLGYPWLAAIRGR--TTPCLPDPSMVPHKTKKE 220
            K L+   QKKKVW SKQVLASPFA   P+A  GT++AVL++     P PFA+REPRPSR +   +   +E         +  KKP RLL GINEVTRALE+  V LV+++RDVTPA L+ H+PVLCFL  A LVV+ G+GT++G +LGTRR+LA+ + ++  E+ + S   +++++ LKP ++ L YPWLAA + +  T P LP+P  VPH+ KK+
Sbjct:    8 KNLTQGKQKKKVWRSKQVLASPFAPVMPAATLGTRDAVLRVLLSAVPVPFAQREPRPSRASLPPQAVPAE---AAPPPHKLCKKPARLLVGINEVTRALERGSVALVLLARDVTPALLVQHVPVLCFLAGAQLVVMPGDGTDMGLVLGTRRVLAVGVAERG-EDGDSSGVAEMILQGLKPLATRLEYPWLAAAKRKKGTPPPLPEPVSVPHRNKKD 219          
BLAST of Ggra7384.t1 vs. uniprot
Match: A0A1S3ISB0 (uncharacterized protein LOC106166727 n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3ISB0_LINUN)

HSP 1 Score: 70.5 bits (171), Expect = 1.630e-10
Identity = 56/196 (28.57%), Postives = 96/196 (48.98%), Query Frame = 0
Query:    2 NSGTQKGLSSKIQKKKVWGSKQVLASPFALTFPSANTGTKEAVLKIFAQQFPEPFAKREPRPSR-KASTREIFRSEEKGGQKSDWRSRKKPIRLLCGINEVTRALEKKRVELVVVSRDVTPAFLITHIPVLCFLNCANLVVLSGNGTELGHILGTRRLLALCILKQTPENSEKSQFIDLLVEKLKPYSSTLGYPWL 196
            N GT +G   KI  KK    KQVL+SP+ +++P+    T+  +L+   ++  + F  R   P + + + +++ +  E+  +  D  S+     +  GIN VT+ LE+  V  V+V RDV P  +  H+ +L        V LSG  + +G ++G + + A+   K        S   D LVE +  ++  L  PWL
Sbjct:   11 NRGTLRG---KIAAKKKKSLKQVLSSPYNVSWPAVEKQTEVVLLERIKKELSQNFVTRPRVPQQIRRNKQQMKKWREEQRKVEDIASKATQSSVYIGINRVTKGLERDEVSAVIVDRDV-PVMMTRHLMLLAATRDCPAVCLSGLSSVIGPVVGMKSVAAISFKKSV---QGASTLYDDLVEFVSSHAPVLQVPWL 199          
BLAST of Ggra7384.t1 vs. uniprot
Match: LOW QUALITY PROTEIN: ribonuclease P protein subunit p38 n=1 Tax=Anolis carolinensis TaxID=28377 RepID=UPI0002039B95 (LOW QUALITY PROTEIN: ribonuclease P protein subunit p38 n=1 Tax=Anolis carolinensis TaxID=28377 RepID=UPI0002039B95)

HSP 1 Score: 60.1 bits (144), Expect = 3.510e-7
Identity = 64/206 (31.07%), Postives = 95/206 (46.12%), Query Frame = 0
Query:    6 QKGLSSKIQKKKVWGSKQVLASPFALTFPSANTGTK-------EAVLKIFAQQFPEPFAKREPRPSRK-------ASTREIF-RSEEKGGQKSDWRSRKKPIRLLCGINEVTRALEKKRVELVVVSRDVTPAFLITHIPVLCFLNCANLVVLSGNGTELGHILGTRRLLALCILKQTPENSEKSQFIDLLVEKLKPYSSTLGYPWL 196
            Q+G  S ++K K    K  L +P+AL + S   G         E VLK  A +  E   +++P P +K       A+T E+   +E K  Q   W S +   +L  GINEVTRALEK  + LV+V +  +P  L +H+  L          +      L  +LG   +LAL   + T   +E       +VEK+ P  S+L  PW+
Sbjct:    4 QEGKGS-LRKSKHMTVKTSLNNPYALKWRSMEGGDMHFILNALEDVLKRLAFKKVELRRRKKPFPGQKQKKEQHCANTGELQDENESKEVQLHGWTSEEIRNQLAIGINEVTRALEKNELLLVLVCKSASPTLLTSHLIPLSVSRAVPAGQVPRFSERLAPVLGLTSVLALGFKRSTDAFAE-------VVEKIIPRISSLEVPWI 201          
BLAST of Ggra7384.t1 vs. uniprot
Match: L8HJI5 (Ribosomal protein L7Ae protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HJI5_ACACA)

HSP 1 Score: 60.5 bits (145), Expect = 3.780e-7
Identity = 45/114 (39.47%), Postives = 61/114 (53.51%), Query Frame = 0
Query:   97 GINEVTRALEKKRVELVVVSRDVTPAFLITHIPVLCFLNCANLVVLSGN-GTELGHILGTRRLLALCI-----LKQTPENSEKSQFIDLLVEKLKPYSSTLGYPWLAAIRGRTT 204
            G+N VT+ALE K++E+VVV +DV PA L+ HIPV  FL    LV LSG+    LG I G R ++A+       L+       +    DL V  LK  +  L  PWL   +  T+
Sbjct:  218 GLNAVTKALEDKQLEVVVVCKDVEPARLVQHIPVQAFLTGVPLVPLSGDLSLRLGAIFGIRTVMAIGFKVSSSLRGYVLRGTEHPHGDL-VAFLKSQAVPLNIPWLLPCKTATS 330          
BLAST of Ggra7384.t1 vs. uniprot
Match: A0A6P4ZLI7 (ribonuclease P protein subunit p38-like n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4ZLI7_BRABE)

HSP 1 Score: 60.1 bits (144), Expect = 4.500e-7
Identity = 51/180 (28.33%), Postives = 87/180 (48.33%), Query Frame = 0
Query:   21 SKQVLASPFALTFPSANTGTKEAVLKIFAQQFP--EPFAKREPRPSRK--ASTREIFRSEEKGGQKSDWRSRKKPIRLLCGINEVTRALEKKRVELVVVSRDVTPAFLITHIPVLCFLNCANLVVLSGNGTELGHILGTRRLLALCILKQTPENSEKSQFIDLLVEKLKPYSSTLGYPWL 196
            SK +L SP+  T+P+   G    +L            + ++E    ++  A T E      +  ++ +  +R+   +L+ GINEVT+ALEK R+ LV+V R V PA +  H+ +L  + C   + LSG    +  IL  R + A+   K + E+++     D LVE +   +  +   WL
Sbjct:   19 SKNLLDSPYQRTWPTLEKGVTPEILSKLKSDLGAVSTYLRKETSKGKRKRAKTAEDAGKLARSVEEQEL-ARQLKSQLVLGINEVTKALEKDRLRLVLVCRSVKPALMTQHLFLLSAVRCVPALCLSGLSETVAPILNFRTVAAMGFKKTSTEDNKT---FDPLVEFVTARTPPIKISWL 194          
BLAST of Ggra7384.t1 vs. uniprot
Match: ribonuclease P protein subunit p38-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI001601C011 (ribonuclease P protein subunit p38-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI001601C011)

HSP 1 Score: 58.5 bits (140), Expect = 1.360e-6
Identity = 38/109 (34.86%), Postives = 58/109 (53.21%), Query Frame = 0
Query:   94 LLCGINEVTRALEKKRVELVVVSRDVTPAFLITHIPVLCFLNCANLVVLSGNGTELGHILGTRRLLALCILKQTPENSEKSQFIDLLVEKLKPYSSTLGYPWLAAIRGR 202
            L+ GINEVT+ALEK R+ LV+V R V PA +  H+ +L  +     + LSG    +  IL  R + A+   K +P++ +     D LVE +   +  +  PWL    G+
Sbjct:   59 LVLGINEVTKALEKDRLRLVLVCRSVKPALMTQHLVLLSAVRRVPALCLSGLSETVAPILNFRTVAAMGFKKTSPKDDKT---FDPLVEFVTSRTPPIKIPWLKLPGGK 164          
BLAST of Ggra7384.t1 vs. uniprot
Match: A0A1X6NRF8 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NRF8_PORUM)

HSP 1 Score: 56.6 bits (135), Expect = 7.580e-6
Identity = 33/79 (41.77%), Postives = 46/79 (58.23%), Query Frame = 0
Query:   90 KPIRLLCGINEVTRALEKKRVELVVVSRDVT-PAFLITHIPVLCFLNCANLVVLSGNGTE-LGHILGTRRLLALCILKQ 166
            KP RL+CGINEVTRA E   + + V  R+      L  H+P LC++    L    G G   LG +LG +RLLA+ +L++
Sbjct:  224 KPPRLVCGINEVTRAAEAGTLAVAVFDREAPLVTVLAAHLPALCYVRRVPLAAFGGGGAAGLGGVLGLKRLLAVGLLRK 302          
The following BLAST results are available for this feature:
BLAST of Ggra7384.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A2V3J1C21.900e-7858.60Ribonuclease P protein subunit p38 n=1 Tax=Gracila... [more]
R7QAC31.320e-5749.54Ribosomal_L7Ae domain-containing protein n=1 Tax=C... [more]
A0A1S3ISB01.630e-1028.57uncharacterized protein LOC106166727 n=2 Tax=Lingu... [more]
LOW QUALITY PROTEIN: ribonuclease P protein subunit p38 n=1 Tax=Anolis carolinensis TaxID=28377 RepID=UPI0002039B953.510e-731.07LOW QUALITY PROTEIN: ribonuclease P protein subuni... [more]
L8HJI53.780e-739.47Ribosomal protein L7Ae protein n=1 Tax=Acanthamoeb... [more]
A0A6P4ZLI74.500e-728.33ribonuclease P protein subunit p38-like n=1 Tax=Br... [more]
ribonuclease P protein subunit p38-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI001601C0111.360e-634.86ribonuclease P protein subunit p38-like n=1 Tax=Br... [more]
A0A1X6NRF87.580e-641.77Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004038Ribosomal protein L7Ae/L30e/S12e/Gadd45PFAMPF01248Ribosomal_L7Aecoord: 87..172
e-value: 5.5E-11
score: 42.0
IPR02906450S ribosomal protein L30e-likeGENE3D3.30.1330.30coord: 35..190
e-value: 3.2E-22
score: 80.8
IPR02906450S ribosomal protein L30e-likeSUPERFAMILY55315L30e-likecoord: 88..179
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 58..80
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..80
IPR042848Ribonuclease P protein subunit Rpp38PANTHERPTHR46948RIBONUCLEASE P PROTEIN SUBUNIT P38coord: 8..198

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000871_piloncontigtig00000871_pilon:940063..940746 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7384.t1Ggra7384.t1Gracilaria gracilis GNS1m malemRNAtig00000871_pilon 940063..940746 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7384.t1 ID=Ggra7384.t1|Name=Ggra7384.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=228bp
MNSGTQKGLSSKIQKKKVWGSKQVLASPFALTFPSANTGTKEAVLKIFAQ
QFPEPFAKREPRPSRKASTREIFRSEEKGGQKSDWRSRKKPIRLLCGINE
VTRALEKKRVELVVVSRDVTPAFLITHIPVLCFLNCANLVVLSGNGTELG
HILGTRRLLALCILKQTPENSEKSQFIDLLVEKLKPYSSTLGYPWLAAIR
GRTTPCLPDPSMVPHKTKKETLAPLKK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004038Ribosomal_L7Ae/L30e/S12e/Gad45
IPR029064L30e-like
IPR042848Rpp38