Ggra7378.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7378.t1
Unique NameGgra7378.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length659
Homology
BLAST of Ggra7378.t1 vs. uniprot
Match: A0A2V3J1F1 (HTH myb-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1F1_9FLOR)

HSP 1 Score: 300 bits (769), Expect = 8.240e-90
Identity = 223/598 (37.29%), Postives = 333/598 (55.69%), Query Frame = 0
Query:   65 HTDSSLLMLSKSLRRILRSEGRNFLNDSIAEGLVNRVSLRCSSQNLQSIVAMLSRGKLNDLHDDHMQIMWLVSCSMECFKLYSKPALNALLRTAFIVVLHEVRITASEFKSREFKRAISFLIDVFPDSKIEHEKLRTFRDKAVSIIRNVSKLFRESRHRAAMTLAKDYERRTSWPGLVAVLRKEAKKLSNEYSILSGGNAPADLNREMKPRNSLKSRSERALERD-YLYQDFDDFDEDVFVQDELMDSDSDEKHSLSR--DYRQDEDEAPN----SNFDHRQVRTAKLRERHQHSKTKARSRKDSGTVRENREDHDEVEIGSVRHGPRRGK-AGRQDDQDSLASELGGLGSQDFPSAVVSSKTDDIRDDKEQEEDMRSVEESSEEHLRNADADFG---ESVTLSDRLEQAKLHGREACVPELRKSSLALGRLGPDDPIDAATEDKKHIDRKLRSRRKQAEERNPREASPFPESEGVHAMKRRKRNLSALSKTRNKRQRQDAQQKQEDKDGHEQKVRRGRFTPYEDGWLIEGIKKYGWGAWTEIVSEHYANRDYTRNPMSLKDRARTLGLDPMKYPRKSGARGRPSNSKERVAEKDHDE 651
            H D   ++ SKSLR I+  E  ++LND++ + +  +VS+R +++N+ S+  +LS GKL+D  +++ QI+WLVS  M+     ++  + AL+R   I  LHEV +++  + SREF R   F+ DVF DSK+ + +L+  RDK +S IR  +K  R+S    A+    +YE++     +  +L+++A +L  EYS  + G+ P+D+  E K       RS ++  RD ++   F D + +    D L   +  E  +     D    E+E P     S+ DH       + E     + K  ++K   T R +R   DE  +G VRH  RR K AG +DD +S   E   + S DFP+ V  S++DD             + +S ++ +R   A  G   ESVTLSD+L+ A L   E C+ EL ++S +L R GP DP+ ++ +D K   R+ RS   +     PREASP PES+G   MK +  +  +L+ T  KR+R++       K+   Q ++RGRF  +ED WL+EGIKKYGWGAWT IV+E+YA  DYTR PMSLKDRARTL LDP KYP K G  GR    +E   +KD+DE
Sbjct:   28 HGDFERVVWSKSLRSIVMDEFGHYLNDALLKRVRRQVSIRTAAKNIISLANILSEGKLHDDAENNDQILWLVSFIMDSGMTLAESTVLALMRVTIIFSLHEVILSSMRYNSREFNRTFHFICDVFSDSKVRNVQLKRARDKGISTIRKAAKAIRDSEKGTALLFLHEYEKKNPLREIARLLKRKAHELEMEYSKFAAGSIPSDIVVEKKHH----PRSTKSKRRDSFVPTAFSDAERNGADSDGLNGGEDGEPSAEPAYPDVVLPEEEEPGIHHESSDDHDGQAMEAVEEPSVEKERK--TKKAMYTERGSRAHLDEESVGRVRHERRREKRAGAEDDLNS--KEYESMDSLDFPAEVADSESDD----------EHVLPQSKKKRVRGQ-ARHGTTEESVTLSDQLDHANLEENEHCIQELHEASASLKRTGPADPLQSSLKDAKKAKRR-RSAPTRGPAPPPREASPIPESDGTQ-MKYKTPHSKSLNTTPTKRRREEV------KNEFGQVIKRGRFQQHEDQWLVEGIKKYGWGAWTNIVNEYYAECDYTRMPMSLKDRARTLNLDPEKYPMKRGGSGRRRAIRE---DKDNDE 595          
BLAST of Ggra7378.t1 vs. uniprot
Match: R7QBA1 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QBA1_CHOCR)

HSP 1 Score: 99.4 bits (246), Expect = 5.960e-18
Identity = 73/200 (36.50%), Postives = 109/200 (54.50%), Query Frame = 0
Query:  451 GESVTLSDRLEQAKLHGREA-CVPELRKSSLALGRLGPDDPIDAATEDKKHIDRKLRSRR--KQAEERNPREASPFPESEGVHAMKRRKRNLSALSKTRNKRQRQDAQQKQE-----DKDGHEQKVRRGRFTPYEDGWLIEGIKKYGWGAWTEIVSEHYANRDYTRNPMSLKDRARTLGLDPMKYPRKSGA----RGRPS 638
            GE+ + SD + ++++ GR    V +LR+++      G  DP+  +  D KH  R++RS    + + + N R ASP P+S  +   KR+ R    +          DA  ++E     +  G+ + +R GRF  YED  L+EG+ +YGWG W +I S+ +    YTR PMSLKDRART+ LDP KYP  +      RGRPS
Sbjct:  499 GETDSDSDEISRSEVTGRGGETVRKLREANARSRASGIPDPLRDSVRDAKHARRRVRSSLMLQYSGDVNGRAASPIPDSAPIIRRKRKMRQDIDM----------DASSEEELVTNQEPIGNGRLMRTGRFQIYEDELLVEGLTRYGWGMWRQI-SDDFGKGKYTRTPMSLKDRARTMNLDPSKYPVPADCGIVKRGRPS 687          
The following BLAST results are available for this feature:
BLAST of Ggra7378.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J1F18.240e-9037.29HTH myb-type domain-containing protein n=1 Tax=Gra... [more]
R7QBA15.960e-1836.50Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 547..567
NoneNo IPR availableGENE3D1.10.10.60coord: 562..621
e-value: 2.6E-8
score: 35.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 635..650
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 546..571
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 418..448
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 309..343
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 306..571
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 357..395
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 490..521
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 459..473
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 609..658
NoneNo IPR availableCDDcd11660SANT_TRFcoord: 572..620
e-value: 1.32003E-8
score: 49.4879
IPR001005SANT/Myb domainPROSITEPS50090MYB_LIKEcoord: 565..621
score: 6.028243
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 568..620

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000871_piloncontigtig00000871_pilon:922868..924970 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7378.t1Ggra7378.t1Gracilaria gracilis GNS1m malemRNAtig00000871_pilon 922868..924970 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7378.t1 ID=Ggra7378.t1|Name=Ggra7378.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=659bp
MSEIQDRVHGNFGAKVLNPVVEPQLFLAEDAFRRSPIQVDSDERDNTCPP
PLMKTGCVNRMRFFHTDSSLLMLSKSLRRILRSEGRNFLNDSIAEGLVNR
VSLRCSSQNLQSIVAMLSRGKLNDLHDDHMQIMWLVSCSMECFKLYSKPA
LNALLRTAFIVVLHEVRITASEFKSREFKRAISFLIDVFPDSKIEHEKLR
TFRDKAVSIIRNVSKLFRESRHRAAMTLAKDYERRTSWPGLVAVLRKEAK
KLSNEYSILSGGNAPADLNREMKPRNSLKSRSERALERDYLYQDFDDFDE
DVFVQDELMDSDSDEKHSLSRDYRQDEDEAPNSNFDHRQVRTAKLRERHQ
HSKTKARSRKDSGTVRENREDHDEVEIGSVRHGPRRGKAGRQDDQDSLAS
ELGGLGSQDFPSAVVSSKTDDIRDDKEQEEDMRSVEESSEEHLRNADADF
GESVTLSDRLEQAKLHGREACVPELRKSSLALGRLGPDDPIDAATEDKKH
IDRKLRSRRKQAEERNPREASPFPESEGVHAMKRRKRNLSALSKTRNKRQ
RQDAQQKQEDKDGHEQKVRRGRFTPYEDGWLIEGIKKYGWGAWTEIVSEH
YANRDYTRNPMSLKDRARTLGLDPMKYPRKSGARGRPSNSKERVAEKDHD
EEIDEYDI*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR009057Homeobox-like_sf