Ggra7366.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7366.t1
Unique NameGgra7366.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length132
Homology
BLAST of Ggra7366.t1 vs. uniprot
Match: R7QAB3 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QAB3_CHOCR)

HSP 1 Score: 143 bits (361), Expect = 1.070e-41
Identity = 71/85 (83.53%), Postives = 78/85 (91.76%), Query Frame = 0
Query:   48 EEKITTKFLTKYERARILGTRALQLSMGAPPMVEVM-GDTDPLVIAKRELQEKKIPITIRRFLPDGTYEDWTLQELNIPSMGSAP 131
            +E+ITT+ LTKYERARILGTRALQLSMGAPPMVE+  G+TDPLVIAKRELQEKKIPITIRRFLPDG+YEDW L +L IPSMG AP
Sbjct:   47 KERITTRTLTKYERARILGTRALQLSMGAPPMVEIQPGETDPLVIAKRELQEKKIPITIRRFLPDGSYEDWPLDDLTIPSMGQAP 131          
BLAST of Ggra7366.t1 vs. uniprot
Match: DNA-directed RNA polymerases I, II, and III subunit RPABC2-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D4A41 (DNA-directed RNA polymerases I, II, and III subunit RPABC2-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D4A41)

HSP 1 Score: 134 bits (336), Expect = 1.220e-37
Identity = 75/122 (61.48%), Postives = 87/122 (71.31%), Query Frame = 0
Query:    9 RVQDYNDGEPAEYEDD-NIDNA-----GEPETAEH--GHIPAESAPAEEKITTKFLTKYERARILGTRALQLSMGAPPMVEVMGDTDPLVIAKRELQEKKIPITIRRFLPDGTYEDWTLQEL 122
            R  DY D    ++ED+ N D+A     GE E A    G       P  E+ITT FLTKYERARILGTRALQ+SMGAPPMV V G++DPL+IA +EL EKKIPITIRR+LPDG+YEDWTL EL
Sbjct:   26 RSDDYVDAPDEDFEDEGNADDAVEAQGGEEEGASRVAGAAGGRGVPRSERITTHFLTKYERARILGTRALQISMGAPPMVNVTGESDPLMIAHKELMEKKIPITIRRYLPDGSYEDWTLPEL 147          
BLAST of Ggra7366.t1 vs. uniprot
Match: A0A1X6P0J5 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P0J5_PORUM)

HSP 1 Score: 126 bits (316), Expect = 6.300e-35
Identity = 62/103 (60.19%), Postives = 82/103 (79.61%), Query Frame = 0
Query:   23 DDNIDNAGEPETAE-HGHIPAESAPAEEKITTKFLTKYERARILGTRALQLSMGAPPMVEVMGDTDPLVIAKRELQEKKIPITIRRFLPDGTYEDWTLQELNI 124
            DDN+D+A EPE  E        + P  ++IT +++TKYERAR+LGTRALQ+SMGAP MVE++G+TDPL+IA +EL++KKIPITIRR+LPDG++EDW   EL I
Sbjct:   23 DDNVDDAPEPEGGEARASGSTYTQPNVKRITARYMTKYERARVLGTRALQISMGAPVMVELVGETDPLMIAHKELRQKKIPITIRRYLPDGSFEDWNCSELTI 125          
BLAST of Ggra7366.t1 vs. uniprot
Match: A0A7E4ZZD5 (RPB6 homolog n=1 Tax=Panagrellus redivivus TaxID=6233 RepID=A0A7E4ZZD5_PANRE)

HSP 1 Score: 125 bits (313), Expect = 1.910e-34
Identity = 66/119 (55.46%), Postives = 89/119 (74.79%), Query Frame = 0
Query:   12 DYNDGEPAEYED-----DNIDNAGEPETAEHGHI-PAESAPAEEKITTKFLTKYERARILGTRALQLSMGAPPMVEVMGDTDPLVIAKRELQEKKIPITIRRFLPDGTYEDWTLQELNI 124
            D ND + A+++D     D+ID    PE      + P +  PAE ++TT F+TKYERARILGTRALQ++MGAP MVE+ G+TDPL IA++EL+E+KIPI IRR+LPDG++EDW + EL+I
Sbjct:    8 DVNDMDDADFDDVDEPMDDID-VDAPEEDNIAFVEPGQQVPAENRVTTPFMTKYERARILGTRALQIAMGAPVMVELEGETDPLEIARKELKEQKIPIIIRRYLPDGSFEDWEIDELHI 125          
BLAST of Ggra7366.t1 vs. uniprot
Match: A0A7S0BD28 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BD28_9RHOD)

HSP 1 Score: 125 bits (313), Expect = 3.150e-34
Identity = 57/81 (70.37%), Postives = 73/81 (90.12%), Query Frame = 0
Query:   44 SAPAEEKITTKFLTKYERARILGTRALQLSMGAPPMVEVMGDTDPLVIAKRELQEKKIPITIRRFLPDGTYEDWTLQELNI 124
            + P EE+ TTK++TKYERARILGTRALQ+SMGAP +VE+ G+TDPLVIA++EL+EKKIPIT+RR+LPDG+YEDW + +L I
Sbjct:   64 AVPREERTTTKYMTKYERARILGTRALQISMGAPILVELEGETDPLVIAQKELREKKIPITVRRYLPDGSYEDWNVDDLII 144          
BLAST of Ggra7366.t1 vs. uniprot
Match: A0A7S4B2A3 (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B2A3_CHRCT)

HSP 1 Score: 124 bits (310), Expect = 1.650e-33
Identity = 57/83 (68.67%), Postives = 72/83 (86.75%), Query Frame = 0
Query:   43 ESAPAEEKITTKFLTKYERARILGTRALQLSMGAPPMVEVMGDTDPLVIAKRELQEKKIPITIRRFLPDGTYEDWTLQELNIP 125
            E+ PA E+ITT ++TK+ERARILGTRALQ+SM AP MVE+ G+TDPL IA +EL+++KIPIT+RRFLPDG+YEDW + EL IP
Sbjct:   59 EATPASERITTPYMTKFERARILGTRALQISMNAPVMVELEGETDPLAIAAKELRKRKIPITVRRFLPDGSYEDWNVDELIIP 141          
BLAST of Ggra7366.t1 vs. uniprot
Match: A0A7M7K532 (RPB6 homolog n=1 Tax=Varroa destructor TaxID=109461 RepID=A0A7M7K532_VARDE)

HSP 1 Score: 122 bits (307), Expect = 1.700e-33
Identity = 61/101 (60.40%), Postives = 77/101 (76.24%), Query Frame = 0
Query:   24 DNIDNAGEPETAEHGHIPAESAPAEEKITTKFLTKYERARILGTRALQLSMGAPPMVEVMGDTDPLVIAKRELQEKKIPITIRRFLPDGTYEDWTLQELNI 124
            D  D  G    AE G  P E    E +ITT+++TKYERAR+LGTRALQ++MGAP MVE+ G+TDPL IAK+EL+ +KIPITIRR+LPDG++EDW + EL I
Sbjct:   28 DEYDAGGAGGPAEGGDGPGEKTENENRITTQYMTKYERARVLGTRALQIAMGAPVMVELEGETDPLQIAKKELKVRKIPITIRRYLPDGSFEDWGIDELII 128          
BLAST of Ggra7366.t1 vs. uniprot
Match: A0A6G0XJ50 (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XJ50_9STRA)

HSP 1 Score: 121 bits (304), Expect = 4.560e-33
Identity = 63/121 (52.07%), Postives = 84/121 (69.42%), Query Frame = 0
Query:    4 DDVDNRVQDYNDGEPAEYEDDNIDNAGEPETAEHGHIPAESAPAEEKITTKFLTKYERARILGTRALQLSMGAPPMVEVMGDTDPLVIAKRELQEKKIPITIRRFLPDGTYEDWTLQELNI 124
            DD+DN  ++  + E   +E+D  D     E    G    E  P   +ITT+++TKYERAR+LGTRALQ+SM AP MV++ G+TDPL IA +EL E+KIPI IRR+LPDG+YEDW++ EL I
Sbjct:   12 DDMDNNEEELQEEEMENFEEDAGDGEDRVEILNEG----EKQPNANRITTRYMTKYERARVLGTRALQISMNAPVMVDIQGETDPLKIAMKELAERKIPIIIRRYLPDGSYEDWSIDELII 128          
BLAST of Ggra7366.t1 vs. uniprot
Match: A0A8H7BVK3 (DNA-directed RNA polymerases I, II, and III subunit RPABC2 n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7BVK3_9FUNG)

HSP 1 Score: 121 bits (304), Expect = 5.440e-33
Identity = 70/132 (53.03%), Postives = 90/132 (68.18%), Query Frame = 0
Query:    2 DEDDVDNRVQDYNDGEPAEYEDDNIDNAGEPETAEHGHIPAE-------SAPA----EEKITTKFLTKYERARILGTRALQLSMGAPPMVEVMGDTDPLVIAKRELQEKKIPITIRRFLPDGTYEDWTLQEL 122
            D +D DN   DY D      +D  ++N GE E  EH  I  E        AP     +EK TT +LTKYERAR+LGTRALQ+S+GAP M+E+ G++DPLVIAKREL+EKKIP+ +RR LPDG+YEDW +++L
Sbjct:    3 DVEDYDNYEYDYGDHFGETVDDVELENEGEEE--EHTTILDEVVNANTTEAPVPLENKEKFTTPYLTKYERARVLGTRALQISLGAPVMIELQGESDPLVIAKRELREKKIPLIVRRTLPDGSYEDWCIKDL 132          
BLAST of Ggra7366.t1 vs. uniprot
Match: I1RRG3 (Uncharacterized protein n=7 Tax=Fusarium sambucinum species complex TaxID=569360 RepID=I1RRG3_GIBZE)

HSP 1 Score: 121 bits (304), Expect = 8.680e-33
Identity = 64/129 (49.61%), Postives = 87/129 (67.44%), Query Frame = 0
Query:    7 DNRVQDYNDGEPA-------EYEDDNIDNAGEPETAEHGH------IPAESAPAEEKITTKFLTKYERARILGTRALQLSMGAPPMVEVMGDTDPLVIAKRELQEKKIPITIRRFLPDGTYEDWTLQEL 122
            D  + DY D EPA       E +DDNI N+G+P    +        +  +  P  E+ TT ++TKYERARILGTRALQ+SM AP +V++ G+TDPL IA +E++EKKIP+ +RR++PDG YEDWT +EL
Sbjct:   21 DEEINDYYDPEPADDGENQQENQDDNIINSGDPSAIANAVKGGDRLLKDKKIPESERTTTPYMTKYERARILGTRALQISMNAPVLVDLEGETDPLQIAIKEMREKKIPLIVRRYMPDGYYEDWTCEEL 149          
The following BLAST results are available for this feature:
BLAST of Ggra7366.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7QAB31.070e-4183.53Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
DNA-directed RNA polymerases I, II, and III subunit RPABC2-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D4A411.220e-3761.48DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A1X6P0J56.300e-3560.19Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7E4ZZD51.910e-3455.46RPB6 homolog n=1 Tax=Panagrellus redivivus TaxID=6... [more]
A0A7S0BD283.150e-3470.37Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S4B2A31.650e-3368.67Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7M7K5321.700e-3360.40RPB6 homolog n=1 Tax=Varroa destructor TaxID=10946... [more]
A0A6G0XJ504.560e-3352.07Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A8H7BVK35.440e-3353.03DNA-directed RNA polymerases I, II, and III subuni... [more]
I1RRG38.680e-3349.61Uncharacterized protein n=7 Tax=Fusarium sambucinu... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006110RNA polymerase, subunit omega/Rpo6/RPB6SMARTSM01409RNA_pol_Rpb6_2coord: 50..103
e-value: 1.3E-7
score: 41.3
IPR006110RNA polymerase, subunit omega/Rpo6/RPB6PFAMPF01192RNA_pol_Rpb6coord: 51..103
e-value: 2.8E-15
score: 56.0
IPR028363DNA-directed RNA polymerase, subunit RPB6PIRSFPIRSF500154RPB6coord: 1..126
e-value: 1.1E-45
score: 153.2
IPR036161RPB6/omega subunit-like superfamilyGENE3D3.90.940.10coord: 1..125
e-value: 1.3E-42
score: 146.8
IPR036161RPB6/omega subunit-like superfamilySUPERFAMILY63562RPB6/omega subunit-likecoord: 16..125
IPR006111Archaeal Rpo6/eukaryotic RPB6 RNA polymerase subunitPIRSFPIRSF000778RpoK/RPB6coord: 1..126
e-value: 2.2E-43
score: 145.6
IPR006111Archaeal Rpo6/eukaryotic RPB6 RNA polymerase subunitHAMAPMF_00192RNApol_arch_Kcoord: 54..109
score: 19.091671
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..44
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..48
NoneNo IPR availablePANTHERPTHR47227DNA-DIRECTED RNA POLYMERASE SUBUNIT Kcoord: 12..122
IPR020708DNA-directed RNA polymerase, 14-18kDa subunit, conserved sitePROSITEPS01111RNA_POL_K_14KDcoord: 57..71

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000871_piloncontigtig00000871_pilon:893064..893615 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7366.t1Ggra7366.t1Gracilaria gracilis GNS1m malemRNAtig00000871_pilon 893064..893615 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7366.t1 ID=Ggra7366.t1|Name=Ggra7366.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=132bp
MDEDDVDNRVQDYNDGEPAEYEDDNIDNAGEPETAEHGHIPAESAPAEEK
ITTKFLTKYERARILGTRALQLSMGAPPMVEVMGDTDPLVIAKRELQEKK
IPITIRRFLPDGTYEDWTLQELNIPSMGSAP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006110Pol_omega/Rpo6/RPB6
IPR028363RPB6
IPR036161RPB6/omega-like_sf
IPR006111Rpo6/Rpb6
IPR020708DNA-dir_RNA_polK_14-18kDa_CS