Ggra7362.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7362.t1
Unique NameGgra7362.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length311
Homology
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BLAST of Ggra7362.t1 vs. uniprot
Match: A0A2V3J2F7 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J2F7_9FLOR)

HSP 1 Score: 266 bits (681), Expect = 1.400e-84
Identity = 168/328 (51.22%), Postives = 217/328 (66.16%), Query Frame = 0 
Query:    1 MSQTAFLSALPLTQTHKPNLNLQRAAPLLPRPRSASFNTPACSLTNHLRKAVLCTAAIALTALPLHTIA---SP-MHINPIQDAPVLVTSASSDRFSSSLAVVGVAKSPIHDYSI-------SSQYASPIQSVDPIDEARRELSLATRLVTAVLLGAIVGVERSATALNLGVRSVTLISLSSAVASVVLACMDAIPPTFLAYPSLAVAFVSIFSGLCVYTAAKLRRPRPRNIGAMSWIVSLSVAMGTACGTGLSLMTVLSCLAAVYVMRQKYTSPLQRKRVPVMVRHTSAEAID------SRERYAEVATSSS-DAYSTSRQPDIGDG 310
            M+ +AFLS LP+     P+   +   P     R +S + P CSLTN +R A    AA+ ++ LPL + +   SP + ++P Q  PVLVT A+S+R  +   VVGVAKSPIHDYSI       +++Y++ ++S+DP+DEARRELSLATRLVTAVLLGAIVGVERSAT LNLGVRS+TLISLSSAV  V+L+ ++         P +AVA  +  +G+ V+  A LRRPRPRN+ AMSWIV+L V MG ACG G SL+TV +CLAAVYVMR  YT P+ RKR+PV + +   E  +       RERY E   SS+ D YS+ R PD  DG
Sbjct:    1 MTPSAFLSPLPVNVKSAPSFFTRHGVPSPFVKRPSSTHNPTCSLTNPIRTAAAALAAVTISLLPLGSTSASSSPSLSVHPQQHEPVLVTYAASERLCAPPPVVGVAKSPIHDYSIPQPNPTITNRYSAALESLDPVDEARRELSLATRLVTAVLLGAIVGVERSATQLNLGVRSITLISLSSAVVCVMLSSVELPLQLMAVSPHMAVASAAAVAGIAVFAMATLRRPRPRNVSAMSWIVTLCVTMGGACGAGSSLLTVFACLAAVYVMRISYTPPVVRKRIPVPISNIRMELDERRDDRRDRERYMEFTASSAYDGYSSVRAPDAPDG 328
The following BLAST results are available for this feature:
BLAST of Ggra7362.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J2F71.400e-8451.22Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003416MgtC/SapB/SrpB/YhiD familyPRINTSPR01837MGTCSAPBPROTcoord: 141..160
score: 38.17
coord: 160..178
score: 29.3
IPR003416MgtC/SapB/SrpB/YhiD familyPFAMPF02308MgtCcoord: 138..257
e-value: 6.5E-8
score: 33.0
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 257..310
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 185..189
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 163..184
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 134..151
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..133
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 223..256
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 152..162
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 212..222
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 190..211
NoneNo IPR availableTMHMMTMhelixcoord: 159..181
NoneNo IPR availableTMHMMTMhelixcoord: 191..213
NoneNo IPR availableTMHMMTMhelixcoord: 226..248

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000871_piloncontigtig00000871_pilon:886171..887103 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7362.t1Ggra7362.t1Gracilaria gracilis GNS1m malemRNAtig00000871_pilon 886171..887103 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7362.t1 ID=Ggra7362.t1|Name=Ggra7362.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=311bp
MSQTAFLSALPLTQTHKPNLNLQRAAPLLPRPRSASFNTPACSLTNHLRK
AVLCTAAIALTALPLHTIASPMHINPIQDAPVLVTSASSDRFSSSLAVVG
VAKSPIHDYSISSQYASPIQSVDPIDEARRELSLATRLVTAVLLGAIVGV
ERSATALNLGVRSVTLISLSSAVASVVLACMDAIPPTFLAYPSLAVAFVS
IFSGLCVYTAAKLRRPRPRNIGAMSWIVSLSVAMGTACGTGLSLMTVLSC
LAAVYVMRQKYTSPLQRKRVPVMVRHTSAEAIDSRERYAEVATSSSDAYS
TSRQPDIGDG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003416MgtC/SapB/SrpB/YhiD_fam