Ggra7355.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7355.t1
Unique NameGgra7355.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length979
Homology
BLAST of Ggra7355.t1 vs. uniprot
Match: A0A2V3J2E5 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J2E5_9FLOR)

HSP 1 Score: 774 bits (1998), Expect = 1.470e-264
Identity = 485/978 (49.59%), Postives = 638/978 (65.24%), Query Frame = 0
Query:    9 YTTVQIQPRCIAQKAADLPRESQPKSVVYKFPWRPLAEAIVQVVILTLAAIVSIQARLKVFVYLFCVLAVPQLLFIVTRFQQFKNGAFDGGESLHKRSSSDKPSQSTSLDVSEQPSFVGGVIRKTITEELGSFRTELTNFEKVSIGREESRNLSISQALSSVNDSVLALKEGMERRDEMSPSIPYATLQELESLKTRLSFFERENASIKQQLKASQVNYEEVLRRAGKARKEAEDASFRELSAREELAIAQSRILHLDELTDRLDRAESKNVELQEELLTRAREREGFKLSADDANRRVTRMESVASMLREKLQKMSGSISPDAKDSTVDEDAKELQQQFWQKRLRNRGNLGRDSVVYQELLRGSKESLSKEWPSDPLGRGSPAKEEKNQAAEGLPADGGFASKNFRMLESAPNTAQDKKMLGMSGASSQSAFSFSRDEFEGGDQGTKTDKSSVQQGVDVNELFPEPEELSGEPAS-ETPEDIGAQSQDRIKQ--ADVSRTQDDG---SGRSQRKMTAPEEKKVQILQQKSPQHRETSGSYMQWLENAS------RTAPSEPSPRKPSDSTFGSRVTVLTDSANSPFPSTSQSQLEMNLQKGNT--GVDSKTDTPDNGGLGKPTASTASTGSTQDADEATKQSGDEVRLHNEEAVFARSKEDNRVKRPRAEAEESQSSLTSSVSPRESQDTLDASASGPSPGTRSVPSAKGSLFGNENSAGQSEERMAGKGTINTQESSELQSDVSIAPPQAQKLEDSGKVSDACGTPNSIAQIVSSKIAKSQTLIEKGRSDGISVSQAVAFLEQAKTILEECLRLNSLRPEVEAALGECLVAWAKLDLKDQRARWLTWKALEYLSRSVKAQPGNEKTLFNSALCNALFGALSTHELAVRHQYAAAQQFDKLLKLNPSAQVAAYNGGLAYLYLARSNIAYDGENKGVIHKYFVLAIERFAKGVMLNPHDPRNAAYLDTARNEMKNFLE 972
            +T +QI P C+AQKAADLP+E+Q      K PWR +AEA+VQ+VIL + A +SIQAR K FVYLF  +AVPQL FIVTRF++         +      SS+  S    +D   + +F   +IR+ I EE  SFR++L +F+K S+ RE++RN  +SQA+SS++ SVL+L++ +ERRD+M P +PYATLQELE+LK RL+ +ERENAS+KQQL+  Q  YEE LR A KARK+A+DASFREL+AREELAIAQ RI+HLDELT+RLDRAE++++EL+EELL R RE+EG KLSADDANRRV R+E+V+ MLREKLQKM+G  S   +D+  +++  + +Q+ WQ+RLRNRGNLGR+SVVYQELLRGSKESL KEWPS+PLG  + +KEEKN+A EGLPADGGF+ K  RML+SAP     +K L MS A +++ FSFSR EFE G   + TD S++ + +  NELFP+ +  + E  S +  +D+    ++ + +   +  ++  +G   SG + R   A  + +    Q  SP    +S SYM+WL+ +S          + P PR P  S   S          +  P+T      +N  +  T  G+ S  D       G P       G    A+  T  S +  R  +E+A               + AE S  SL + V  +E Q +L  S +     +++     G+           EE ++ K     QE  +  S+    P                  P+SI +IVS+K+  +  LIEKGR +GIS+S+A +FL+QAKTILEECLRL+ LR E+EAALGECLV WAKLDL+D+RARWLTWKALEYL+R VKA P NEK LFNSALCNALFGALS+HE+AV HQYAAAQQFD+LL++NP+AQVAAYNGGLAYLYLARS +A++ + K  I KYF L+IERFAKGVMLNP D RNA+YLDTARNEMK FLE
Sbjct:    9 HTRIQIMPLCVAQKAADLPQETQRHRTTLKIPWRTIAEAVVQLVILAVGATISIQARRKFFVYLFSFMAVPQLYFIVTRFKECGPTTARLNDGTKDAPSSEWLSGPPDVDTELKTAFAESLIRQAIVEEFVSFRSDLDHFQKSSLEREDTRNTVVSQAVSSLDASVLSLRDQLERRDQMRPEVPYATLQELETLKARLNLYERENASLKQQLRNLQFMYEETLRNADKARKDAQDASFRELTAREELAIAQIRIVHLDELTNRLDRAEARSMELEEELLDRTREKEGLKLSADDANRRVARVENVSKMLREKLQKMTGRASAGEQDALSEDNVDDSEQRLWQRRLRNRGNLGRNSVVYQELLRGSKESLIKEWPSNPLGSDA-SKEEKNEALEGLPADGGFSGKGSRMLQSAPTPGGPEKALRMSEAPAEAVFSFSRGEFEKGGIAS-TDSSTIHKTITENELFPDGKGSAQESDSADEDKDVRTFKKEELNENVPETDKSAIEGKQESGGNLRVPKASGQHQGLDSQSFSPNRTRSSESYMEWLQESSWKRKDGGKTKTIPRPRLPVPSEPQSADMSSGYQKGAVEPATLDEDGSLNQTRSETADGISSSVDV-----RGIPETFDTEEGECNTAN--TNGSLENERTDSEDAS--------------SRAERSNHSLETDVQEQEVQ-SLPTSNTTAERDSQAEARVNGATH---------EEGLSLKAPFGDQEKVKKSSNTRYKP----------------NVPSSIVKIVSNKVTNAHELIEKGRKEGISISEASSFLKQAKTILEECLRLSVLRMEIEAALGECLVVWAKLDLRDERARWLTWKALEYLTRCVKALPNNEKALFNSALCNALFGALSSHEVAVHHQYAAAQQFDRLLQINPNAQVAAYNGGLAYLYLARSYVAFERDKKADIQKYFELSIERFAKGVMLNPLDTRNASYLDTARNEMKGFLE 937          
BLAST of Ggra7355.t1 vs. uniprot
Match: R7QBB8 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QBB8_CHOCR)

HSP 1 Score: 278 bits (711), Expect = 6.470e-75
Identity = 277/1044 (26.53%), Postives = 493/1044 (47.22%), Query Frame = 0
Query:   22 KAADLPRESQPKSVVYKFPWRPLAEAIVQVVILTLAAIVSIQARLKVFVYLFCVLAVPQLLFIVTRFQ-QFKNGAF---DGGESLHKRSSSDKPSQSTSLDVSEQPSFVGGVIRKTITEELGSFRTELTNFEKVSIGREESRNLSISQALSSVNDSVLALKEGMERRDEMSPSIPYATLQELESLKTRLSFFERENASIKQQLKASQVNYEEVLRRAGKARKEAEDASFRELSAREELAIAQSRILHLDELTDRLDRAESKNVELQEELLTRAREREGFKLSADDANRRVTRMESVASMLREKLQKMSGSISPDAKDST---VDEDAKELQQQFWQKRLRNRGNLGRD-SVVYQELLRGSKE-SLSKEWPSDPLGRGSPAKEEKNQAA-EGLPADGGFASKNFRMLESAPNTAQDKKMLGMSGASSQSAFSFSRDEFEG-GDQGTKTDKSSVQQGVDVNELFPEPEELSGEPASETP--EDIGAQSQDRIKQADVSRTQDDGSGRSQRKMTAPEEKKVQILQQKSPQHRETS-GSYMQWLENASRTAPSEPSPRKPSDSTFGSRVTV----LTDSANSPFPSTSQSQLEMNLQKGNTGV----DSKTDTPDNGGLGKPTASTASTGSTQDADEATKQSGDEVRL----------------------------HNEEAVFARSKEDNRVKRPRAEAEESQSSLTSSVSPRESQDTLDASASGPSPGTRSVPSAKGSLFGNENSAGQSEERMAGKGTINTQESSELQSDVSIAPPQAQKLEDSGKVSDACGTPNSIAQIVSSK-------------------------------------------IAKSQTLIEKGRSDGISVSQAVAFLEQAKTILEECLRLNSLRPEVEAALGECLVAWAKLDLKDQRARWLTWKALEYLSRSVKAQPGNEKTLFNSALCNALFGALSTHELAVRHQYAAAQQFDKLLKLNPSAQVAAYNGGLAYLYLARSNIAYDGENKGVIHKYFVLAIERFAKGVMLNPHDPRNAAYLDTARNEMKNFLE 972
            +A   PR S+ ++      W+   E  +Q+ I  LA   S+ A+ + F +    L +PQL   + RF+ + + G+F   D   +  +R  + +  ++    ++E        IR +I  E+   R  +   E  +I RE++RN SI+ AL+S+++S+ A++  +E R+++  + P+A + ELE+ ++RL   ERE   ++ +L+  Q N+EE  R   +AR+EA++A+ +EL  R ELA   SR+  LDE+T+RL  AE +N EL+EE++ ++RE E  + SA D+ +RV R+E+++ +LREK+Q ++G      +  +   + +   E ++QFWQ+RLR+  ++ R  S++YQELL    + + +KEWP  PL  G   +E+K QA  E LPADGGF   +     S  +  Q      +   +  + FSFSR EF+  G   ++T  ++  Q   V+          G+  S+ P  +  G +  D+  + D+   Q DG                  L+ ++P   ET+    ++ + N  R    E +  +  ++T  +  T+    +   A++P P  SQS   +++  G+TG     DS T+ P     G  +      G+  +++ + K  GD++ L                             N++   + +K +N       +A ESQ++ T  V    S DT+  S       +  +P+A G++  + ++A  +      +    T E +++       P  + +   SG++          A +  SK                                           +  +  L+++ R  G++V+Q+    ++A + LE  + L   RP V+A  G  L+AWAK++L D  +     KA  YLS S++ +P +E T+FN+ALC  L G+ S    A  +   A + +D+LL LN ++++ A+N GLAY+ L R  +  D  ++     YF  A+ERF   + L P D +   YL+  + E+    +
Sbjct:  138 EAKQKPRRSRERAT-----WQFFTETAIQISITGLAIAASVIAKARFFAFASAFLYLPQLFLALRRFRRELEVGSFAEMDSQGTQERRLEAMETMEAKEKQINESL-LASAAIRGSIGSEVDMLRYSIEQMEISTIQREQARNRSIADALASLDESIRAVRRTVETRNQIESAAPFALVAELETSQSRLKQSEREKGELQSKLQILQANFEEAKRSGERARREADEATQKELLLRVELATVTSRLTRLDEITERLQTAELRNDELREEVVIKSREEENLRQSAADSEKRVLRVENISRVLREKMQGITGRGEHSERKRSPQPISQTEAEAEEQFWQRRLRSSASIPRPGSLLYQELLGSPSDGNYNKEWPDSPLDGG--VQEKKRQAQLENLPADGGFGDVSTTEQSSEGDGGQSVSTGQLPVPAGDAMFSFSRGEFDSSGKPSSRTLPAAPSQEKKVD----------GDGPSDVPTADLTGKEIADQAGRLDMLEYQVDGK-----------------LKSEAPNVTETNPDKALEGISNFERKLGGERAISETIEATERTSETMRDEFVVGKASTPDPEPSQS---ISID-GSTGTSDSDDSSTNNPVIPSGGSLSLKPLKEGNQNESNLSEKSIGDQLELTRSSTLENNVSDKSNSPAAGGSLADAVSFNQDNEGSNAKSENGGVILSPDAAESQNASTEDVL-EGSSDTVTGSVQ-----SLEMPNAGGAVLESRDTASFNGGNSVSRKVSKTDEKAQI-------PSSSMEESPSGRIKGVIDEEKPGAAVTDSKSNDVTNGDSSVVDKADEASLRSNQVFDRNPLQRKRPVPTPKELVDSANELVKQARKRGVAVAQSDGLFQRAVSKLEAAMSLGFERPYVQAEYGGALLAWAKVNLADPASYKRLTKAQRYLSASLQTRPNDEDTVFNTALCLCLLGSTSEPRQAKDYYSRACELYDRLLGLNGTSRIGAFNCGLAYISLGRLALVDDEIDEKARIGYFETALERFGTAIELKPGDGKAQTYLEDCKRELSQLRQ 1129          
The following BLAST results are available for this feature:
BLAST of Ggra7355.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J2E51.470e-26449.59Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QBB86.470e-7526.53Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 199..219
NoneNo IPR availableCOILSCoilCoilcoord: 265..292
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 526..632
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 376..757
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 429..444
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 501..523
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 633..667
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 668..743
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..43
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 69..88
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 44..62
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 63..68
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 89..978
NoneNo IPR availableTMHMMTMhelixcoord: 43..62
NoneNo IPR availableTMHMMTMhelixcoord: 69..86
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 769..961
e-value: 3.9E-8
score: 35.3
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 844..969

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000871_piloncontigtig00000871_pilon:863434..866370 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7355.t1Ggra7355.t1Gracilaria gracilis GNS1m malemRNAtig00000871_pilon 863434..866370 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7355.t1 ID=Ggra7355.t1|Name=Ggra7355.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=979bp
MTSTVSTNYTTVQIQPRCIAQKAADLPRESQPKSVVYKFPWRPLAEAIVQ
VVILTLAAIVSIQARLKVFVYLFCVLAVPQLLFIVTRFQQFKNGAFDGGE
SLHKRSSSDKPSQSTSLDVSEQPSFVGGVIRKTITEELGSFRTELTNFEK
VSIGREESRNLSISQALSSVNDSVLALKEGMERRDEMSPSIPYATLQELE
SLKTRLSFFERENASIKQQLKASQVNYEEVLRRAGKARKEAEDASFRELS
AREELAIAQSRILHLDELTDRLDRAESKNVELQEELLTRAREREGFKLSA
DDANRRVTRMESVASMLREKLQKMSGSISPDAKDSTVDEDAKELQQQFWQ
KRLRNRGNLGRDSVVYQELLRGSKESLSKEWPSDPLGRGSPAKEEKNQAA
EGLPADGGFASKNFRMLESAPNTAQDKKMLGMSGASSQSAFSFSRDEFEG
GDQGTKTDKSSVQQGVDVNELFPEPEELSGEPASETPEDIGAQSQDRIKQ
ADVSRTQDDGSGRSQRKMTAPEEKKVQILQQKSPQHRETSGSYMQWLENA
SRTAPSEPSPRKPSDSTFGSRVTVLTDSANSPFPSTSQSQLEMNLQKGNT
GVDSKTDTPDNGGLGKPTASTASTGSTQDADEATKQSGDEVRLHNEEAVF
ARSKEDNRVKRPRAEAEESQSSLTSSVSPRESQDTLDASASGPSPGTRSV
PSAKGSLFGNENSAGQSEERMAGKGTINTQESSELQSDVSIAPPQAQKLE
DSGKVSDACGTPNSIAQIVSSKIAKSQTLIEKGRSDGISVSQAVAFLEQA
KTILEECLRLNSLRPEVEAALGECLVAWAKLDLKDQRARWLTWKALEYLS
RSVKAQPGNEKTLFNSALCNALFGALSTHELAVRHQYAAAQQFDKLLKLN
PSAQVAAYNGGLAYLYLARSNIAYDGENKGVIHKYFVLAIERFAKGVMLN
PHDPRNAAYLDTARNEMKNFLELKQGAT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf