Ggra7313.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7313.t1
Unique NameGgra7313.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length320
Homology
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BLAST of Ggra7313.t1 vs. uniprot
Match: A0A2V3J1D3 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1D3_9FLOR)

HSP 1 Score: 380 bits (976), Expect = 2.000e-128
Identity = 190/263 (72.24%), Postives = 225/263 (85.55%), Query Frame = 0 
Query:   52 FKPSESTCTREPMACAKWMGKEADKNLQSGIWNSQNKFYLLAKKMEELALAQEDLSIEMRRNNRSKEEADEIVKAWKERWLEMATLHLENPEENVTKFADPVFVNYSYMKDERQRIENEISQNNLYDANNKNKAVRKETMDKIPRYLGSITQLQNHIKSKKTETDRYLQEIKEIANRTAHLQLEATNIIYETTHSSNLDGEIALLDQELLDLYIELKKERAILHEANLNSTFSKLRLVGMMRRLVKEISIGQSECPPSEQFGV 314
            F PSESTCTREP+ACAKW+GKEADKNL+  IWN Q +FY++AKKMEELA A+EDL IE +  N+SKE+ADEI+KAW+ RW + AT+HLENPE N T+FADPVF NY+ +K E ++++ EIS N+LY AN +NK +RKETM+ IP YLGSI+ LQNHIKS+K  TDRYLQ+IKEIANRTAHLQ+EATNIIYETTHS +LDGEI LLD ELLDLY +LK ERA L++ANLNST SKLRLVGMMRRLVKEISI QSECP +EQFG+
Sbjct:  118 FVPSESTCTREPIACAKWLGKEADKNLRDRIWNQQTEFYVMAKKMEELATAKEDLIIETKETNKSKEKADEILKAWEGRWYDEATIHLENPEGNGTRFADPVFFNYTSVKKEVRQMDMEISNNDLYHANKRNKEIRKETMETIPIYLGSISGLQNHIKSRKARTDRYLQDIKEIANRTAHLQIEATNIIYETTHSKDLDGEITLLDHELLDLYADLKAERAKLYQANLNSTISKLRLVGMMRRLVKEISIQQSECPSNEQFGI 380
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BLAST of Ggra7313.t1 vs. uniprot
Match: A0A2V3J140 (DNA topoisomerase 6 subunit A n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J140_9FLOR)

HSP 1 Score: 65.9 bits (159), Expect = 9.870e-9
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 0 
Query:    1 MNVVSDARAIIVVEKEAAFHSLIDESGDRGALSSFLVITGKGYPDIGTRL 50
            M++V DAR IIVVEKEAA  SLIDES    +L SF++++GKGYPD  TRL
Sbjct:   74 MHIVVDARGIIVVEKEAALTSLIDESTSEDSLLSFVIVSGKGYPDYATRL 123
The following BLAST results are available for this feature:
BLAST of Ggra7313.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J1D32.000e-12872.24Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J1409.870e-964.00DNA topoisomerase 6 subunit A n=1 Tax=Gracilariops... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.1360.10coord: 1..66
e-value: 1.5E-9
score: 39.7
IPR036078Spo11/DNA topoisomerase VI subunit A superfamilySUPERFAMILY56726DNA topoisomerase IV, alpha subunitcoord: 2..50

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000871_piloncontigtig00000871_pilon:717097..723452 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7313.t1Ggra7313.t1Gracilaria gracilis GNS1m malemRNAtig00000871_pilon 717097..723452 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7313.t1 ID=Ggra7313.t1|Name=Ggra7313.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=320bp
MNVVSDARAIIVVEKEAAFHSLIDESGDRGALSSFLVITGKGYPDIGTRL
EFKPSESTCTREPMACAKWMGKEADKNLQSGIWNSQNKFYLLAKKMEELA
LAQEDLSIEMRRNNRSKEEADEIVKAWKERWLEMATLHLENPEENVTKFA
DPVFVNYSYMKDERQRIENEISQNNLYDANNKNKAVRKETMDKIPRYLGS
ITQLQNHIKSKKTETDRYLQEIKEIANRTAHLQLEATNIIYETTHSSNLD
GEIALLDQELLDLYIELKKERAILHEANLNSTFSKLRLVGMMRRLVKEIS
IGQSECPPSEQFGVGSSTN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036078Spo11/TopoVI_A_sf