Ggra7290.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7290.t1
Unique NameGgra7290.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length133
Homology
BLAST of Ggra7290.t1 vs. uniprot
Match: R7Q697 (40S ribosomal protein S24 n=2 Tax=Rhodymeniophycidae TaxID=2045261 RepID=R7Q697_CHOCR)

HSP 1 Score: 245 bits (625), Expect = 6.980e-82
Identity = 123/132 (93.18%), Postives = 129/132 (97.73%), Query Frame = 0
Query:    1 MSDSKTCTIRTRKFLTNQLLQRKQFVIDVLHPGRANVPKAELTEKLTKMYKVSDPSTIFLFGFATQFGGGKSTGFGVIYDSLTAAKKFEPVYRLRRAGMAEAPTGSRKQRRERKNRSLKLRGVAKGKSLGHK 132
            MSDSKTCTIRTRKFLTN+LLQRKQFVIDVLHPGRANVPKAELTEKLTKMYKVSDPSTIFLFGF+TQFGGGKSTGFGVIYD+LT+AKKFEP YRLRRAGMA+ PTGSRKQRRERKNRSLKLRG+AK KSLGHK
Sbjct:    1 MSDSKTCTIRTRKFLTNRLLQRKQFVIDVLHPGRANVPKAELTEKLTKMYKVSDPSTIFLFGFSTQFGGGKSTGFGVIYDNLTSAKKFEPTYRLRRAGMADMPTGSRKQRRERKNRSLKLRGLAKAKSLGHK 132          
BLAST of Ggra7290.t1 vs. uniprot
Match: A0A1Y1IHS4 (40S ribosomal protein S24 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IHS4_KLENI)

HSP 1 Score: 181 bits (460), Expect = 1.080e-56
Identity = 95/130 (73.08%), Postives = 106/130 (81.54%), Query Frame = 0
Query:    1 MSDSKTCTIRTRKFLTNQLLQRKQFVIDVLHPGRANVPKAELTEKLTKMYKVSDPSTIFLFGFATQFGGGKSTGFGVIYDSLTAAKKFEPVYRLRRAGMAEAPTGSRKQRRERKNRSLKLRGVAKGKSLG 130
            MSD+K  TIRTRKFLTN+LLQRKQFVIDVLHPGRANV KAEL EKL K+Y+V DP+TIF+FGF TQFGGGKS GFG+IYD+L AAKKFEP YRL R G+      SRKQ +ERKNRS K+RGV K K  G
Sbjct:    1 MSDAKASTIRTRKFLTNRLLQRKQFVIDVLHPGRANVSKAELKEKLAKLYEVRDPATIFVFGFRTQFGGGKSVGFGLIYDNLDAAKKFEPRYRLVRNGLETKIEKSRKQIKERKNRSRKVRGVKKNKVAG 130          
BLAST of Ggra7290.t1 vs. uniprot
Match: A0A5J4XS23 (40S ribosomal protein S24 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XS23_9CHLO)

HSP 1 Score: 179 bits (453), Expect = 1.110e-55
Identity = 92/128 (71.88%), Postives = 103/128 (80.47%), Query Frame = 0
Query:    5 KTCTIRTRKFLTNQLLQRKQFVIDVLHPGRANVPKAELTEKLTKMYKVSDPSTIFLFGFATQFGGGKSTGFGVIYDSLTAAKKFEPVYRLRRAGMAEAPTGSRKQRRERKNRSLKLRGVAKGKSLGHK 132
            K+CTIRTRKF+TN+LL RKQFVIDVLHPGR NVPKAEL EKL KMY V DP  +F FGF TQFGGGKSTGFG+IYDS+ AAKKFEP YRL R G+A+    SRKQ +ERKNRS K+RGV K   +G K
Sbjct:    4 KSCTIRTRKFMTNRLLFRKQFVIDVLHPGRPNVPKAELKEKLAKMYDVRDPQQVFCFGFRTQFGGGKSTGFGLIYDSIDAAKKFEPRYRLVRNGLADKIEKSRKQIKERKNRSKKIRGVKKNAVVGKK 131          
BLAST of Ggra7290.t1 vs. uniprot
Match: A0A1X6P015 (40S ribosomal protein S24 n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P015_PORUM)

HSP 1 Score: 179 bits (453), Expect = 1.150e-55
Identity = 93/132 (70.45%), Postives = 103/132 (78.03%), Query Frame = 0
Query:    1 MSDSKTCTIRTRKFLTNQLLQRKQFVIDVLHPGRANVPKAELTEKLTKMYKVSDPSTIFLFGFATQFGGGKSTGFGVIYDSLTAAKKFEPVYRLRRAGMAEAPTGSRKQRRERKNRSLKLRGVAKGKSLGHK 132
            MSDSK+CTIRTRKFLTN+LL RKQF+IDVLHPGRA+VPK+EL +KL KMYKVSDP TIF+FGF   FGGGKSTGFGVIYDSL  AKKFEP YRL R G+A A  GSRKQR         +RG AK K+   K
Sbjct:    1 MSDSKSCTIRTRKFLTNRLLYRKQFIIDVLHPGRASVPKSELKDKLAKMYKVSDPQTIFVFGFGIAFGGGKSTGFGVIYDSLDYAKKFEPKYRLVRQGLATASVGSRKQRXXXXXXMKAMRGKAKAKAAEKK 132          
BLAST of Ggra7290.t1 vs. uniprot
Match: I0YU44 (40S ribosomal protein S24 n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YU44_COCSC)

HSP 1 Score: 179 bits (453), Expect = 1.150e-55
Identity = 92/129 (71.32%), Postives = 107/129 (82.95%), Query Frame = 0
Query:    5 KTCTIRTRKFLTNQLLQRKQFVIDVLHPGRANVPKAELTEKLTKMYKVSDPSTIFLFGFATQFGGGKSTGFGVIYDSLTAAKKFEPVYRLRRAGMAEAPTG-SRKQRRERKNRSLKLRGVAKGKSLGHK 132
            K+CTIRTRKF+TN+LL R+QFVIDVLHPGR NVPKAEL EKLTKMY V D + +F+FGF TQFGGGKSTGFG+IYD++ AAKKFEP YRL R G+AEAP   SRKQ +ERKNR+ K+RGV K   +G K
Sbjct:    4 KSCTIRTRKFMTNKLLARRQFVIDVLHPGRPNVPKAELKEKLTKMYDVRDSNGVFVFGFRTQFGGGKSTGFGLIYDTVDAAKKFEPKYRLIRNGLAEAPQNKSRKQIKERKNRTKKIRGVKKNAVVGKK 132          
BLAST of Ggra7290.t1 vs. uniprot
Match: A0A388JQN3 (40S ribosomal protein S24 n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JQN3_CHABU)

HSP 1 Score: 179 bits (453), Expect = 1.260e-55
Identity = 89/128 (69.53%), Postives = 108/128 (84.38%), Query Frame = 0
Query:    1 MSDSKTCTIRTRKFLTNQLLQRKQFVIDVLHPGRANVPKAELTEKLTKMYKVSDPSTIFLFGFATQFGGGKSTGFGVIYDSLTAAKKFEPVYRLRRAGMAEAPTGSRKQRRERKNRSLKLRGVAKGKS 128
            M+DSKTCTIRTRKF+TN+LLQRKQFVIDVLHPGR  VPKAE+ +KL+++Y V DP +IF+FGF TQFGGGK+TGFG+IYD++ +AKKFEP YRL R G+A     SRKQ +ERKNR+ K+RGV K KS
Sbjct:    1 MADSKTCTIRTRKFMTNRLLQRKQFVIDVLHPGRPTVPKAEVKDKLSRLYDVRDPQSIFVFGFRTQFGGGKTTGFGLIYDNVESAKKFEPKYRLVRNGLATRVEKSRKQVKERKNRAKKIRGVKKVKS 128          
BLAST of Ggra7290.t1 vs. uniprot
Match: A0A176VGK8 (40S ribosomal protein S24 n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VGK8_MARPO)

HSP 1 Score: 177 bits (448), Expect = 7.760e-55
Identity = 89/130 (68.46%), Postives = 105/130 (80.77%), Query Frame = 0
Query:    1 MSDSKTCTIRTRKFLTNQLLQRKQFVIDVLHPGRANVPKAELTEKLTKMYKVSDPSTIFLFGFATQFGGGKSTGFGVIYDSLTAAKKFEPVYRLRRAGMAEAPTGSRKQRRERKNRSLKLRGVAKGKSLG 130
            M+D+K CT+RTRKF+TN+LL RKQFVIDVLHPGR NV KAEL EKL K+Y+V D  TIF+FGF TQFGGGKSTGFG+IYD+L +AKK+EP YRL R G+A     SRKQ +ERKNR+ KLRG  K K+ G
Sbjct:    1 MADAKACTVRTRKFMTNRLLARKQFVIDVLHPGRPNVSKAELKEKLAKVYEVRDAQTIFVFGFRTQFGGGKSTGFGLIYDNLDSAKKYEPKYRLIRNGLATKVEKSRKQVKERKNRAKKLRGTKKSKAAG 130          
BLAST of Ggra7290.t1 vs. uniprot
Match: A9NKN3 (40S ribosomal protein S24 n=2 Tax=Picea sitchensis TaxID=3332 RepID=A9NKN3_PICSI)

HSP 1 Score: 174 bits (440), Expect = 1.240e-53
Identity = 88/128 (68.75%), Postives = 104/128 (81.25%), Query Frame = 0
Query:    1 MSDSKTCTIRTRKFLTNQLLQRKQFVIDVLHPGRANVPKAELTEKLTKMYKVSDPSTIFLFGFATQFGGGKSTGFGVIYDSLTAAKKFEPVYRLRRAGMAEAPTGSRKQRRERKNRSLKLRGVAKGKS 128
            M+D+K  T+RTRKF+TN+LL RKQFVIDVLHPGR NV KAEL EKL K+Y+V DP TIF+FGF TQFGGGKS+GFG+IYDSL  AKK+EP YRL R G+A     SRKQ +ERKNR+ K+RGV K K+
Sbjct:    1 MADAKAVTVRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLAKLYEVRDPQTIFVFGFRTQFGGGKSSGFGLIYDSLEHAKKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIRGVKKTKA 128          
BLAST of Ggra7290.t1 vs. uniprot
Match: A0A830HCK6 (40S ribosomal protein S24 n=2 Tax=Eukaryota TaxID=2759 RepID=A0A830HCK6_9CHLO)

HSP 1 Score: 172 bits (437), Expect = 2.840e-53
Identity = 90/123 (73.17%), Postives = 98/123 (79.67%), Query Frame = 0
Query:    5 KTCTIRTRKFLTNQLLQRKQFVIDVLHPGRANVPKAELTEKLTKMYKVSDPSTIFLFGFATQFGGGKSTGFGVIYDSLTAAKKFEPVYRLRRAGMAEAPTGSRKQRRERKNRSLKLRGVAKGK 127
            K CTIRTRKF+TN+LL RKQFVIDVLHPGRANV K+EL EKL KMY   D   IFLF F TQFGGGKSTGFG+IYDSL AAKKFEP YRL R G+ +A TGSRKQ +ERKNR   +RGV K K
Sbjct:    4 KGCTIRTRKFMTNRLLSRKQFVIDVLHPGRANVGKSELKEKLAKMYNCKDEQCIFLFQFKTQFGGGKSTGFGLIYDSLDAAKKFEPKYRLVRNGLDKAKTGSRKQLKERKNRMRSVRGVKKSK 126          
BLAST of Ggra7290.t1 vs. uniprot
Match: A0A7S3IKB4 (40S ribosomal protein S24 n=2 Tax=Alveolata TaxID=33630 RepID=A0A7S3IKB4_9SPIT)

HSP 1 Score: 172 bits (436), Expect = 5.050e-53
Identity = 88/132 (66.67%), Postives = 104/132 (78.79%), Query Frame = 0
Query:    1 MSDSKTCTIRTRKFLTNQLLQRKQFVIDVLHPGRANVPKAELTEKLTKMYKVSDPSTIFLFGFATQFGGGKSTGFGVIYDSLTAAKKFEPVYRLRRAGMAEAPTGSRKQRRERKNRSLKLRGVAKGKSLGHK 132
            MSD KTCTIRTRKF+TN+LLQR+QFV+DVLHPGR NV KAEL EKL   Y V DP  +FLFGF TQFGGGKSTGFG+IYD++ AAK+FEP YRL R G+      SRKQ++ER+NR+ K+RGV K   +G K
Sbjct:    6 MSD-KTCTIRTRKFITNRLLQRRQFVVDVLHPGRPNVSKAELKEKLAASYDVKDPQAVFLFGFRTQFGGGKSTGFGLIYDNIPAAKQFEPKYRLIRNGLDTRVEKSRKQKKERRNRARKVRGVKKNAPVGKK 136          
The following BLAST results are available for this feature:
BLAST of Ggra7290.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7Q6976.980e-8293.1840S ribosomal protein S24 n=2 Tax=Rhodymeniophycid... [more]
A0A1Y1IHS41.080e-5673.0840S ribosomal protein S24 n=1 Tax=Klebsormidium ni... [more]
A0A5J4XS231.110e-5571.8840S ribosomal protein S24 n=1 Tax=Trebouxia sp. A1... [more]
A0A1X6P0151.150e-5570.4540S ribosomal protein S24 n=1 Tax=Porphyra umbilic... [more]
I0YU441.150e-5571.3240S ribosomal protein S24 n=1 Tax=Coccomyxa subell... [more]
A0A388JQN31.260e-5569.5340S ribosomal protein S24 n=1 Tax=Chara braunii Ta... [more]
A0A176VGK87.760e-5568.4640S ribosomal protein S24 n=2 Tax=Marchantia polym... [more]
A9NKN31.240e-5368.7540S ribosomal protein S24 n=2 Tax=Picea sitchensis... [more]
A0A830HCK62.840e-5373.1740S ribosomal protein S24 n=2 Tax=Eukaryota TaxID=... [more]
A0A7S3IKB45.050e-5366.6740S ribosomal protein S24 n=2 Tax=Alveolata TaxID=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001976Ribosomal protein S24ePFAMPF01282Ribosomal_S24ecoord: 26..102
e-value: 9.4E-32
score: 108.8
IPR001976Ribosomal protein S24ePANTHERPTHR1049640S RIBOSOMAL PROTEIN S24coord: 5..127
IPR001976Ribosomal protein S24eHAMAPMF_00545Ribosomal_S24ecoord: 5..107
score: 16.51223
NoneNo IPR availableGENE3D3.30.70.3370coord: 1..132
e-value: 5.3E-52
score: 177.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 109..132
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 99..132
IPR018098Ribosomal S24e conserved sitePROSITEPS00529RIBOSOMAL_S24Ecoord: 67..89
IPR012678Ribosomal protein L23/L15e core domain superfamilySUPERFAMILY54189Ribosomal proteins S24e, L23 and L15ecoord: 8..109

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000871_piloncontigtig00000871_pilon:639367..639966 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7290.t1Ggra7290.t1Gracilaria gracilis GNS1m malemRNAtig00000871_pilon 639367..639966 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7290.t1 ID=Ggra7290.t1|Name=Ggra7290.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=133bp
MSDSKTCTIRTRKFLTNQLLQRKQFVIDVLHPGRANVPKAELTEKLTKMY
KVSDPSTIFLFGFATQFGGGKSTGFGVIYDSLTAAKKFEPVYRLRRAGMA
EAPTGSRKQRRERKNRSLKLRGVAKGKSLGHK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001976Ribosomal_S24e
IPR018098Ribosomal_S24e_CS
IPR012678Ribosomal_L23/L15e_core_dom_sf