Ggra7286.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7286.t1
Unique NameGgra7286.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length160
Homology
BLAST of Ggra7286.t1 vs. uniprot
Match: A0A2V3J278 (Glycine-rich RNA-binding protein 4, mitochondrial n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J278_9FLOR)

HSP 1 Score: 163 bits (413), Expect = 2.320e-49
Identity = 83/111 (74.77%), Postives = 93/111 (83.78%), Query Frame = 0
Query:   49 PYMVEGESSIDSDTPVAEETKLFVGNLAWKTTDESLSEAFSEFGTVVDSRVIFDRFTGKSRGFGFIEYEAPDSASKALTEMNGAEVDGRAVRVDRATRKANNRQRPREEFY 159
            P MV+ E S  +DT ++EE KLFVGNL+W TTDESL EAFS +GTVVDSRVIFDRFTGKSRGFGFIEYEAPDSAS+AL  MNG EVDGRA+RVDRATR+A  RQR +E  Y
Sbjct:    6 PRMVQEEESAPNDTQLSEERKLFVGNLSWNTTDESLGEAFSRYGTVVDSRVIFDRFTGKSRGFGFIEYEAPDSASEALVGMNGVEVDGRAIRVDRATRRAR-RQRFQENLY 115          
BLAST of Ggra7286.t1 vs. uniprot
Match: R7Q7V3 (Cold-inducible RNA-binding protein, putative n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q7V3_CHOCR)

HSP 1 Score: 133 bits (334), Expect = 1.100e-36
Identity = 83/166 (50.00%), Postives = 104/166 (62.65%), Query Frame = 0
Query:    1 MCAFVSPTAFS-ASNLRV-------GSATTSYRGATFRVATVRPSSITRTVPKLQVPYMVEGESSIDSDTPVAEETKLFVGNLAWKTTDESLSEAFSEFGTVVDSRVIFDRFTGKSRGFGFIEYEAPDSASKALTEMNGAEVDGRAVRVDRATRKANNRQRPREEF 158
            M AFV+P A   AS+ R+       GS  +  R A  R   + P+S+    PKL +   +E +     + P  EETKLFVGNL+W TTDESL  AFS +GTVVDSRV+ DRFT KSRGFGFI+YE   SA  AL  MNG  VDGR VRVDRA R+   ++RP+ ++
Sbjct:    1 MSAFVTPLAVPLASSARLSMVSPLSGSLRSFARSA--RTVCIAPASL---APKLTME--MEMQDGPMDEPPALEETKLFVGNLSWDTTDESLGAAFSSYGTVVDSRVVIDRFTRKSRGFGFIQYETAASAEDALVGMNGVSVDGRNVRVDRANRRPPRQRRPQSDY 159          
BLAST of Ggra7286.t1 vs. uniprot
Match: A0A8H7EN54 (RRM domain-containing protein n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7EN54_9FUNG)

HSP 1 Score: 107 bits (267), Expect = 2.930e-27
Identity = 51/90 (56.67%), Postives = 68/90 (75.56%), Query Frame = 0
Query:   69 KLFVGNLAWKTTDESLSEAFSEFGTVVDSRVIFDRFTGKSRGFGFIEYEAPDSASKALTEMNGAEVDGRAVRVDRATRKANNRQRPREEF 158
            KLFVG LAW T D++L EAFS +GTVV + VI DR TG+SRGFGF+ Y++PD A +A+  MN  E+DGR ++VDRA   A  ++RPR++F
Sbjct:    4 KLFVGGLAWATNDDNLYEAFSAYGTVVQASVIKDRETGRSRGFGFVTYDSPDDADRAIEAMNNQELDGRNIKVDRA---AERQERPRQQF 90          
BLAST of Ggra7286.t1 vs. uniprot
Match: A0A2E7MAQ0 (RNA-binding protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2E7MAQ0_9DELT)

HSP 1 Score: 102 bits (254), Expect = 2.090e-25
Identity = 47/81 (58.02%), Postives = 61/81 (75.31%), Query Frame = 0
Query:   68 TKLFVGNLAWKTTDESLSEAFSEFGTVVDSRVIFDRFTGKSRGFGFIEYEAPDSASKALTEMNGAEVDGRAVRVDRATRKA 148
            +KLFVG LAW T D SL E F +FG V D++VI DR TG+SRGFGF+ +   DSA+ AL E+NG+E+DGR +RVD AT ++
Sbjct:    3 SKLFVGGLAWATNDASLKEHFEQFGEVTDAKVITDRETGRSRGFGFVTFSESDSANSALQELNGSELDGRTIRVDTATERS 83          
BLAST of Ggra7286.t1 vs. uniprot
Match: A0A0K6FWB4 (Hypothetical protein n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A0K6FWB4_9AGAM)

HSP 1 Score: 101 bits (251), Expect = 4.220e-25
Identity = 47/82 (57.32%), Postives = 63/82 (76.83%), Query Frame = 0
Query:   68 TKLFVGNLAWKTTDESLSEAFSEFGTVVDSRVIFDRFTGKSRGFGFIEYEAPDSASKALTEMNGAEVDGRAVRVDRATRKAN 149
            +KL+VGNL+W TTDE+L  AF E+G VVDS V+ DR TG+SRGFGF+ YE+ D A+ A+  +NGAEVDGR +RV+ A  + +
Sbjct:    2 SKLYVGNLSWSTTDETLRHAFGEYGNVVDSIVMKDRETGRSRGFGFVTYESTDEANAAINALNGAEVDGRNLRVNLANARGS 83          
BLAST of Ggra7286.t1 vs. uniprot
Match: K4G3H5 (Cold inducible RNA binding protein isoform 3 n=1 Tax=Callorhinchus milii TaxID=7868 RepID=K4G3H5_CALMI)

HSP 1 Score: 102 bits (253), Expect = 7.720e-25
Identity = 48/88 (54.55%), Postives = 65/88 (73.86%), Query Frame = 0
Query:   64 VAEETKLFVGNLAWKTTDESLSEAFSEFGTVVDSRVIFDRFTGKSRGFGFIEYEAPDSASKALTEMNGAEVDGRAVRVDRATRKANNR 151
            ++EE KLFVG L + T ++SL E FSE+G V + R+I DR TG SRGFGF+ +E+PD A  ALT MNG  ++GR +RVDRA +K+ +R
Sbjct:    1 MSEERKLFVGGLNFNTEEQSLEEVFSEYGQVSEVRIIRDRDTGTSRGFGFVTFESPDDAQDALTSMNGRSLEGRQIRVDRAEKKSGDR 88          
BLAST of Ggra7286.t1 vs. uniprot
Match: A0A2G6J5Q0 (RNA-binding protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2G6J5Q0_9PROT)

HSP 1 Score: 100 bits (248), Expect = 1.300e-24
Identity = 47/77 (61.04%), Postives = 59/77 (76.62%), Query Frame = 0
Query:   69 KLFVGNLAWKTTDESLSEAFSEFGTVVDSRVIFDRFTGKSRGFGFIEYEAPDSASKALTEMNGAEVDGRAVRVDRAT 145
            KLFVG LAW TTD+SL +AF+ +G V ++RVI DR TG+SRGFGF+ Y   D A +AL  +NGAE+DGR +RVD AT
Sbjct:    4 KLFVGGLAWATTDDSLRDAFASYGDVQEARVITDRETGRSRGFGFVTYGQDDDADQALNALNGAELDGRTIRVDVAT 80          
BLAST of Ggra7286.t1 vs. uniprot
Match: A9P9S1 (RRM domain-containing protein n=7 Tax=Saliceae TaxID=238069 RepID=A9P9S1_POPTR)

HSP 1 Score: 99.0 bits (245), Expect = 1.080e-23
Identity = 47/80 (58.75%), Postives = 62/80 (77.50%), Query Frame = 0
Query:   68 TKLFVGNLAWKTTDESLSEAFSEFGTVVDSRVIFDRFTGKSRGFGFIEYEAPDSASKALTEMNGAEVDGRAVRVDRATRK 147
            +KLF+G LAW T D+SL +AFS FG V ++RVI DR TG+SRGFGF+ YE+ +SAS+AL+ M+G E+ GR +RV  AT K
Sbjct:   36 SKLFIGGLAWSTDDQSLKDAFSGFGEVTEARVITDRDTGRSRGFGFVSYESTESASEALSAMDGQELGGRNIRVGYATDK 115          
BLAST of Ggra7286.t1 vs. uniprot
Match: R7QRX6 (RNA binding protein-like protein, putative (Fragment) n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QRX6_CHOCR)

HSP 1 Score: 99.4 bits (246), Expect = 1.150e-23
Identity = 50/84 (59.52%), Postives = 67/84 (79.76%), Query Frame = 0
Query:   64 VAEE-TKLFVGNLAWKTTDESLSEAFSE-FGTVVDSRVIFDRFTGKSRGFGFIEYEAPDSASKALTEMNGAEVDGRAVRVDRAT 145
            +AEE  +LFVGNL+W T D+SL EAF +  GTVV+++VI DR++G+SRGFGF+ + + D A++A   MNGAEVDGRAVRVD A+
Sbjct:   59 MAEEGNRLFVGNLSWGTNDQSLHEAFDKGSGTVVEAKVIIDRYSGRSRGFGFVTFNSADQAAEARDSMNGAEVDGRAVRVDVAS 142          
BLAST of Ggra7286.t1 vs. uniprot
Match: A0A8H3C174 (Hypothetical protein n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H3C174_9AGAM)

HSP 1 Score: 97.4 bits (241), Expect = 1.410e-23
Identity = 44/82 (53.66%), Postives = 63/82 (76.83%), Query Frame = 0
Query:   68 TKLFVGNLAWKTTDESLSEAFSEFGTVVDSRVIFDRFTGKSRGFGFIEYEAPDSASKALTEMNGAEVDGRAVRVDRATRKAN 149
            +K++VGNL+W TTDESL  AFS+ G V+DS V+ DR TG+SRGFGF+ + + D A+ A+ E+NGAE+DGR +RV+ A  + +
Sbjct:    2 SKVYVGNLSWSTTDESLRNAFSQHGNVIDSIVMKDRETGRSRGFGFVTFSSNDEANAAVNELNGAELDGRQLRVNLANERGS 83          
The following BLAST results are available for this feature:
BLAST of Ggra7286.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J2782.320e-4974.77Glycine-rich RNA-binding protein 4, mitochondrial ... [more]
R7Q7V31.100e-3650.00Cold-inducible RNA-binding protein, putative n=1 T... [more]
A0A8H7EN542.930e-2756.67RRM domain-containing protein n=1 Tax=Apophysomyce... [more]
A0A2E7MAQ02.090e-2558.02RNA-binding protein n=1 Tax=Deltaproteobacteria ba... [more]
A0A0K6FWB44.220e-2557.32Hypothetical protein n=1 Tax=Rhizoctonia solani Ta... [more]
K4G3H57.720e-2554.55Cold inducible RNA binding protein isoform 3 n=1 T... [more]
A0A2G6J5Q01.300e-2461.04RNA-binding protein n=1 Tax=Proteobacteria bacteri... [more]
A9P9S11.080e-2358.75RRM domain-containing protein n=7 Tax=Saliceae Tax... [more]
R7QRX61.150e-2359.52RNA binding protein-like protein, putative (Fragme... [more]
A0A8H3C1741.410e-2353.66Hypothetical protein n=1 Tax=Rhizoctonia solani Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 69..142
e-value: 6.2E-30
score: 115.4
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 70..139
e-value: 3.1E-23
score: 81.4
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 68..146
score: 21.633808
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 52..158
e-value: 7.3E-34
score: 118.9
NoneNo IPR availablePANTHERPTHR48024GEO13361P1-RELATEDcoord: 47..154
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 55..155

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000871_piloncontigtig00000871_pilon:632794..633273 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7286.t1Ggra7286.t1Gracilaria gracilis GNS1m malemRNAtig00000871_pilon 632794..633273 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7286.t1 ID=Ggra7286.t1|Name=Ggra7286.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=160bp
MCAFVSPTAFSASNLRVGSATTSYRGATFRVATVRPSSITRTVPKLQVPY
MVEGESSIDSDTPVAEETKLFVGNLAWKTTDESLSEAFSEFGTVVDSRVI
FDRFTGKSRGFGFIEYEAPDSASKALTEMNGAEVDGRAVRVDRATRKANN
RQRPREEFY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf