Ggra7224.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7224.t1
Unique NameGgra7224.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length357
Homology
BLAST of Ggra7224.t1 vs. uniprot
Match: A0A2V3ILN4 (Type-4 uracil-DNA glycosylase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ILN4_9FLOR)

HSP 1 Score: 325 bits (832), Expect = 2.590e-106
Identity = 178/333 (53.45%), Postives = 218/333 (65.47%), Query Frame = 0
Query:   24 SKLATRSIGHSIMFGVGRWSMCSDIGEAAKAEIFKPSPFHKYRVARSRRISNQSQEANKLMGDNSSSEMEMSSEVDTRDVTETGRDEKEAKQAEKPKAEIVDDPKEDKTRRQVANQKIRLTGLEEVELKDASIENKMQFDSHEDLMKALHELANDPLESEGGRIVLYRGSKTAKIMIIGEAPGEMEDRLGKPFVGRAGELLDKIFDYGGFDTETQVYVTNVVKRRPHKNRTPNSVEMQYYKPYLLEEIRLIQPAIIVLAGAVAAQAMLGPVSITKVRGKWYGGGTQPWVMPIFHPAYLLRNPIRKHDMVTDIEEIRDKYIQEVPNGTLSPLKR 356
            S +A+R  G        RW+  + I +A +A +F+PSPFH YR+ R    +N+  +A                               +A + ++ K+E    P    TR   A                      +QF SHED ++ L  +  DPLE EGGRIV YRGS  AK+MIIGEAPGEMED++GKPFVGRAG+LLDKIF YGGFDTETQVY+TN+VKRRP +NRTPN+VEMQYY+PYLL EIRLI+PAII+LAGAVA QAMLG VSI+KVRG+W+GGG + W+MPIFHPAYLLRNPIRKHDMVTDIEEIR KY+Q +P+  L PLKR
Sbjct:   83 SSMASRPEGSFPKTRFCRWNPRAGISDAQRAAVFQPSPFHDYRIRRLGSTNNRQSDA-------------------------------KAPKEQESKSE----PDGGTTRHMDA----------------------IQFSSHEDYLQTLQSMKGDPLEKEGGRIVTYRGSVKAKMMIIGEAPGEMEDKIGKPFVGRAGQLLDKIFTYGGFDTETQVYITNIVKRRPRQNRTPNTVEMQYYEPYLLGEIRLIKPAIIILAGAVATQAMLGSVSISKVRGQWFGGGEEAWMMPIFHPAYLLRNPIRKHDMVTDIEEIRRKYMQLLPHEKLQPLKR 358          
BLAST of Ggra7224.t1 vs. uniprot
Match: A0A835YMS9 (Type-4 uracil-DNA glycosylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMS9_9STRA)

HSP 1 Score: 202 bits (515), Expect = 7.250e-60
Identity = 105/202 (51.98%), Postives = 136/202 (67.33%), Query Frame = 0
Query:  154 ASIENKM-QFDSHEDLMKALHELANDPLESEGGRIVLYRGSKTAKIMIIGEAPGEMEDRLGKPFVGRAGELLDKIFDYGGFDTETQVYVTNVVKRRPHKNRTPNSVEMQYYKPYLLEEIRLIQPAIIVLAGAVAAQAMLGPV-SITKVRGKWYGGGTQP------WVMPIFHPAYLLRNPIR-----KHDMVTDIEEIRDKY 342
            A+++ K+ QF  H ++  AL  L  DPLE  GGRIV+YRG   AK+M++GEAPG MED  GKPFVGR+G+LLD I    GFD ET +YV+N+V+RRP +NR P + E+ YY+P+LLEEIRL+ PAII+  G  + +A+L     ITKVRG+WY  GT P      W MP FHP+YLLRNP +     K     D +E+R KY
Sbjct:   48 AAVQQKIPQFKDHAEMTAALLALTGDPLEPAGGRIVVYRGDPQAKLMVVGEAPGAMEDETGKPFVGRSGQLLDAILKAAGFDPETDLYVSNIVRRRPPENRDPTTAEIAYYRPWLLEEIRLVNPAIIITTGRWSMRAVLNERRGITKVRGQWYAPGTTPDLPAATWAMPWFHPSYLLRNPTKDEGGPKWLTWVDAQEVRRKY 249          
BLAST of Ggra7224.t1 vs. uniprot
Match: A0A3M1EZS2 (Type-4 uracil-DNA glycosylase n=1 Tax=Caldilineae bacterium TaxID=2420332 RepID=A0A3M1EZS2_9CHLR)

HSP 1 Score: 193 bits (491), Expect = 6.940e-57
Identity = 102/187 (54.55%), Postives = 127/187 (67.91%), Query Frame = 0
Query:  162 FDSHEDLMKALHELANDPLESEGGRIVLYRGSKTAKIMIIGEAPGEMEDRLGKPFVGRAGELLDKIFDYGGFDTETQVYVTNVVKRRPHKNRTPNSVEMQYYKPYLLEEIRLIQPAIIVLAGAVAAQAMLGPV-SITKVRGKWYGGGTQPWVMPIFHPAYLLRNPIR-----KHDMVTDIEEIRDKY 342
            F +H+ L++AL  L  DPLE  GG +V+YRG+  AK+M+IGE PG  EDRL KPFVGR+G+LLDKI     FD ET VY+TNVVKRRP +NR P   E+ +Y PYL EEIRL+ P II+L G  A   +LG    ITKVRG+W+  G + W+MP+FHPAYLLRNP R     K     DI  +R +Y
Sbjct:   27 FPTHQALVEALENLTGDPLEPWGGNMVIYRGNPAAKLMVIGEGPGAEEDRLRKPFVGRSGQLLDKILRAVHFDPETDVYITNVVKRRPPENRDPTPEEINFYAPYLFEEIRLVDPKIIMLTGRYAMLTILGEKRGITKVRGQWFERGGR-WIMPMFHPAYLLRNPQRTPGSPKALTWDDIRAVRARY 212          
BLAST of Ggra7224.t1 vs. uniprot
Match: A0A1W9W486 (Type-4 uracil-DNA glycosylase n=1 Tax=Anaerolineaceae bacterium 4572_78 TaxID=1972460 RepID=A0A1W9W486_9CHLR)

HSP 1 Score: 187 bits (475), Expect = 1.150e-54
Identity = 99/187 (52.94%), Postives = 126/187 (67.38%), Query Frame = 0
Query:  162 FDSHEDLMKALHELANDPLESEGGRIVLYRGSKTAKIMIIGEAPGEMEDRLGKPFVGRAGELLDKIFDYGGFDTETQVYVTNVVKRRPHKNRTPNSVEMQYYKPYLLEEIRLIQPAIIVLAGAVAAQAMLGPV-SITKVRGKWYGGGTQPWVMPIFHPAYLLRNPIR-----KHDMVTDIEEIRDKY 342
            + +H+ L++ L  L +DPLES G  +V+YRG   A +MIIGEAPG  ED++GKPFVGR+G+LLDKI     F+ ET +Y+TN +KRRP  NR P   E++YY P+L EEIRL+ P II+LAG  A   +L     ITKVRG+W   G + WVMPIFHPAYLLRNP +     K  M  DI  +R KY
Sbjct:   12 YPTHQALVETLKNLTDDPLESTGSNMVIYRGYPKADLMIIGEAPGAEEDKIGKPFVGRSGQLLDKILQAVHFNIETDIYITNTLKRRPPNNRNPKQEELEYYFPFLAEEIRLVDPKIILLAGKYAMLTILQEKRGITKVRGQWVEQGGR-WVMPIFHPAYLLRNPRKTPGSPKALMWEDIRAVRAKY 197          
BLAST of Ggra7224.t1 vs. uniprot
Match: A0A7C3BN30 (Type-4 uracil-DNA glycosylase n=2 Tax=Chloroflexi TaxID=200795 RepID=A0A7C3BN30_9CHLR)

HSP 1 Score: 187 bits (474), Expect = 1.310e-54
Identity = 99/189 (52.38%), Postives = 128/189 (67.72%), Query Frame = 0
Query:  160 MQFDSHEDLMKALHELANDPLESEGGRIVLYRGSKTAKIMIIGEAPGEMEDRLGKPFVGRAGELLDKIFDYGGFDTETQVYVTNVVKRRPHKNRTPNSVEMQYYKPYLLEEIRLIQPAIIVLAGAVAAQAMLGPV-SITKVRGKWYGGGTQPWVMPIFHPAYLLRNPIRKHDMVT-----DIEEIRDKY 342
            +QF SH++L++AL+ L  DPLE  GG IV+YRG+  AK+MIIGE PG  EDRL KPFVGR+G+LLD+I     F+ E  VY++NVV+RRP KNR P   E+ +Y PYL EEIRL+ P II+L G  A   +L     ITKVRG+W+    + W+MP+FHPAYLLRNP ++          DI  +R KY
Sbjct:    6 LQFASHQELVEALNNLGGDPLEQWGGNIVIYRGNPAAKLMIIGEGPGANEDRLRKPFVGRSGKLLDQILSAVNFNPEQDVYISNVVRRRPPKNRDPLPKEIAFYAPYLFEEIRLLDPKIILLIGRHAMMTILKEKRGITKVRGQWFQKDGR-WIMPMFHPAYLLRNPGKRPGSPKSLTWDDIRAVRAKY 193          
BLAST of Ggra7224.t1 vs. uniprot
Match: A0A7C3CIK3 (Type-4 uracil-DNA glycosylase n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C3CIK3_9CHLR)

HSP 1 Score: 187 bits (474), Expect = 1.900e-54
Identity = 95/192 (49.48%), Postives = 130/192 (67.71%), Query Frame = 0
Query:  157 ENKMQFDSHEDLMKALHELANDPLESEGGRIVLYRGSKTAKIMIIGEAPGEMEDRLGKPFVGRAGELLDKIFDYGGFDTETQVYVTNVVKRRPHKNRTPNSVEMQYYKPYLLEEIRLIQPAIIVLAGAVAAQAMLGPV-SITKVRGKWYGGGTQPWVMPIFHPAYLLRNPIR---KHDMVT--DIEEIRDKY 342
            E  + F++H  +++A+  L +DPL   G R+V+YRG+  A ++I+GE PG  EDRLGKP+VGR+G+LLDKI +  GFD++  VYVTN V RRP  NR P   E+ +Y PYLLE IR++ P +I+L G  + + +LG    ITKVRG WY    + W+MP+FHPAYLLRNP R   K   +T  DI+ +R KY
Sbjct:    7 EKPLHFETHAAIIRAMEALTDDPLYPTGNRMVIYRGNPQADLLIVGEGPGANEDRLGKPYVGRSGQLLDKILEAAGFDSQNGVYVTNTVFRRPPDNRDPTQAELDFYLPYLLELIRIVDPKVILLTGRFSMRQILGEKRGITKVRGTWYQRHDR-WIMPMFHPAYLLRNPSRAVGKPKSLTWQDIQAVRRKY 197          
BLAST of Ggra7224.t1 vs. uniprot
Match: A0A7S2S1J0 (Type-4 uracil-DNA glycosylase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S1J0_9STRA)

HSP 1 Score: 186 bits (473), Expect = 4.080e-53
Identity = 99/194 (51.03%), Postives = 129/194 (66.49%), Query Frame = 0
Query:  157 ENKMQFDSHEDLMKALHELANDPLESEGGRIVLYRGSKTAKIMIIGEAPGEMEDRLGKPFVGRAGELLDKIFDYGGFDTETQVYVTNVVKRRPHKNRTPNSVEMQYYKPYLLEEIRLIQPAIIVLAGAVAAQAMLG-PVSITKVRGKWYGGGTQPWV--MPIFHPAYLLRNPIRKHDMV-----TDIEEIRDKY 342
            E ++QF S E+L  AL  L+ DPLE  GGR+V YRG+  AK++++GEAPG  ED LG P+VGRAG+LLD+I    GFD E  VY TNVVKRRP +NR P + E++YY P LLEE+RL+ P I+V  G  + + +L     ITKVRG+W+     P +  MP+FHP+YLLRNP RK          D +EIR K+
Sbjct:   20 EEEVQFSSFEELASALAGLSGDPLEEFGGRVVHYRGNPGAKVVVVGEAPGATEDELGVPYVGRAGKLLDQILTAAGFDVEEDVYFTNVVKRRPPENRDPTAAELRYYSPLLLEELRLVDPWIVVCTGRFSMRTLLDVKQGITKVRGQWFPLPGLPEIHGMPMFHPSYLLRNPSRKAGSPKSLTWVDAQEIRRKF 213          
BLAST of Ggra7224.t1 vs. uniprot
Match: A0A1W9V9H1 (UDG domain-containing protein n=2 Tax=Chloroflexi TaxID=200795 RepID=A0A1W9V9H1_9CHLR)

HSP 1 Score: 181 bits (460), Expect = 2.440e-52
Identity = 102/202 (50.50%), Postives = 133/202 (65.84%), Query Frame = 0
Query:  161 QFDSHEDLMKALHELANDPLESEGGRIVLYRGSKTAKIMIIGEAPGEMEDRLGKPFVGRAGELLDKIFDYGGFDTETQVYVTNVVKRRPHKN-----RTPNSVEMQYYKPYLLEEIRLIQPAIIVLAGAVAAQAMLGPVSITKVRGKWYGGGTQPWVMPIFHPAYLLRNPIR-----KHDMVTDIEEIRDKYIQEVPNGTLS 352
            Q+DS ++L+KA+  + ND L   G  +V+ RG+  AK++I+GEAPG  E+  GKPFVG+AG+LLDKI     FD +  V++TN V R P        R P+S E++YYKPYLLE IRL+   I++LAG VA QA+LG   IT++RGKW     + WVMPIFHP+YLLRNP R     K  M  DI+E+R KY  EV  GT S
Sbjct:   10 QYDSLDELLKAMQNMTNDLLAKTGTNMVISRGNPNAKLLIVGEAPGPQENIQGKPFVGKAGKLLDKILHAVNFDMDQDVFITNSVFRMPPGQGGKAFRKPDSSEIEYYKPYLLEIIRLVDAPIVLLAGNVACQAILGRTGITRLRGKWLQIQGR-WVMPIFHPSYLLRNPSRTPNSPKALMWKDIQEVRRKY-DEVTRGTRS 209          
BLAST of Ggra7224.t1 vs. uniprot
Match: A0A3M2A1B7 (Type-4 uracil-DNA glycosylase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3M2A1B7_9CHLR)

HSP 1 Score: 177 bits (450), Expect = 6.930e-51
Identity = 96/202 (47.52%), Postives = 132/202 (65.35%), Query Frame = 0
Query:  157 ENKMQFDSHEDLMKALHELANDPLESEGGRIVLYRGSKTAKIMIIGEAPGEMEDRLGKPFVGRAGELLDKIFDYGGFDTETQVYVTNVVKRRPHKN-----RTPNSVEMQYYKPYLLEEIRLIQPAIIVLAGAVAAQAMLGPVSITKVRGKWYGGGTQPWVMPIFHPAYLLRNPIRKHDMVT-----DIEEIRDKYIQEVPN 348
            E    + S ++L+  + ++ +DPL   G R+V+YRG+  A++MIIGEAPG  E+RLGKPFVGR+G+LLD+I      D+E  V++TN V R P        R P S E+ +YKP+LLE IRLI PAI++L G VA +++L  V ITK+RG+W+    + W MP+FHPAYLLRNP RK          DI+E+R KY + V N
Sbjct:    8 ERPQYYTSLDELVSHMMQMTDDPLYPAGTRMVIYRGNPDARLMIIGEAPGTEENRLGKPFVGRSGQLLDQILQAVDLDSEKDVFITNAVFRMPPGTDGRPIRKPTSEEIAWYKPFLLEIIRLIDPAIMILMGNVATESLLERVGITKLRGQWFQWNGR-WAMPMFHPAYLLRNPSRKQGSPKWLTWQDIQEVRRKYDELVAN 208          
BLAST of Ggra7224.t1 vs. uniprot
Match: W7TG57 (Type-4 uracil-DNA glycosylase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TG57_9STRA)

HSP 1 Score: 180 bits (457), Expect = 8.480e-51
Identity = 101/201 (50.25%), Postives = 137/201 (68.16%), Query Frame = 0
Query:  161 QFDSHEDLMKALHELANDPLESEGGRIVLYRGSKTAKIMIIGEAPGEMEDRLGKPFVGRAGELLDKIFDYGGFDTETQVYVTNVVKRRPHKNRTPNSVEMQYYKPYLLEEIRLIQPAIIVLAGAVAAQAMLGPVS---ITKVRGKWY-----------GGGTQPWVMPIFHPAYLLRNPIRKHD-----MVTDIEEIRDKY 342
            ++  H D ++AL  L  DPL++EG R+V++RG+  AKIM+IGEAPGE ED  GKPFVGRAG+LLD I    G D E+ VY+TNVV RRP  NRTP++ E+ +Y PYL+E +RL+ P II+LAGA A +A+L P+    IT++RG+W+           G G++  VMPIFHP+YLLRNP RK +        DI+ +R +Y
Sbjct:   79 RYAGHADFVQALQGLRGDPLQAEGTRVVIHRGNAGAKIMVIGEAPGETEDVEGKPFVGRAGKLLDAILASVGLD-ESSVYITNVVLRRPPNNRTPSASEVAWYLPYLMENVRLVDPLIILLAGACACKALL-PLEKQGITRIRGQWFERRFGTEGGLDGQGSR-LVMPIFHPSYLLRNPSRKVEGPKWLTWQDIQAVRRRY 276          
The following BLAST results are available for this feature:
BLAST of Ggra7224.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ILN42.590e-10653.45Type-4 uracil-DNA glycosylase n=1 Tax=Gracilariops... [more]
A0A835YMS97.250e-6051.98Type-4 uracil-DNA glycosylase n=1 Tax=Tribonema mi... [more]
A0A3M1EZS26.940e-5754.55Type-4 uracil-DNA glycosylase n=1 Tax=Caldilineae ... [more]
A0A1W9W4861.150e-5452.94Type-4 uracil-DNA glycosylase n=1 Tax=Anaerolineac... [more]
A0A7C3BN301.310e-5452.38Type-4 uracil-DNA glycosylase n=2 Tax=Chloroflexi ... [more]
A0A7C3CIK31.900e-5449.48Type-4 uracil-DNA glycosylase n=1 Tax=Anaerolineae... [more]
A0A7S2S1J04.080e-5351.03Type-4 uracil-DNA glycosylase n=1 Tax=Rhizochromul... [more]
A0A1W9V9H12.440e-5250.50UDG domain-containing protein n=2 Tax=Chloroflexi ... [more]
A0A3M2A1B76.930e-5147.52Type-4 uracil-DNA glycosylase n=1 Tax=Chloroflexi ... [more]
W7TG578.480e-5150.25Type-4 uracil-DNA glycosylase n=2 Tax=Monodopsidac... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005122Uracil-DNA glycosylase-likeSMARTSM00986UDG_2coord: 189..336
e-value: 3.9E-29
score: 112.8
IPR005122Uracil-DNA glycosylase-likePFAMPF03167UDGcoord: 191..328
e-value: 5.0E-37
score: 127.3
NoneNo IPR availableSMARTSM00987UDG_2_acoord: 189..336
e-value: 3.9E-29
score: 112.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 71..130
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 71..94
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 95..130
NoneNo IPR availablePANTHERPTHR33693TYPE-5 URACIL-DNA GLYCOSYLASEcoord: 157..343
NoneNo IPR availablePANTHERPTHR33693:SF1TYPE-4 URACIL-DNA GLYCOSYLASEcoord: 157..343
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..356
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..21
NoneNo IPR availableCDDcd10030UDG-F4_TTUDGA_SPO1dp_likecoord: 179..339
e-value: 3.64692E-69
score: 212.304
IPR005273Uracil-DNA glycosylase family 4TIGRFAMTIGR00758TIGR00758coord: 184..340
e-value: 4.6E-46
score: 154.6
IPR036895Uracil-DNA glycosylase-like domain superfamilyGENE3D3.40.470.10coord: 166..349
e-value: 7.8E-53
score: 180.8
IPR036895Uracil-DNA glycosylase-like domain superfamilySUPERFAMILY52141Uracil-DNA glycosylase-likecoord: 163..339

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000871_piloncontigtig00000871_pilon:245196..246266 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7224.t1Ggra7224.t1Gracilaria gracilis GNS1m malemRNAtig00000871_pilon 245196..246266 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7224.t1 ID=Ggra7224.t1|Name=Ggra7224.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=357bp
MRSSRQALGLAFAFAPQFALQARSKLATRSIGHSIMFGVGRWSMCSDIGE
AAKAEIFKPSPFHKYRVARSRRISNQSQEANKLMGDNSSSEMEMSSEVDT
RDVTETGRDEKEAKQAEKPKAEIVDDPKEDKTRRQVANQKIRLTGLEEVE
LKDASIENKMQFDSHEDLMKALHELANDPLESEGGRIVLYRGSKTAKIMI
IGEAPGEMEDRLGKPFVGRAGELLDKIFDYGGFDTETQVYVTNVVKRRPH
KNRTPNSVEMQYYKPYLLEEIRLIQPAIIVLAGAVAAQAMLGPVSITKVR
GKWYGGGTQPWVMPIFHPAYLLRNPIRKHDMVTDIEEIRDKYIQEVPNGT
LSPLKR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005122Uracil-DNA_glycosylase-like
IPR005273Ura-DNA_glyco_family4
IPR036895Uracil-DNA_glycosylase-like_sf