Ggra7175.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7175.t1
Unique NameGgra7175.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length681
Homology
BLAST of Ggra7175.t1 vs. uniprot
Match: A0A2V3IIQ0 (Nucleolar and coiled-body phosphoprotein 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IIQ0_9FLOR)

HSP 1 Score: 147 bits (372), Expect = 1.300e-33
Identity = 76/96 (79.17%), Postives = 82/96 (85.42%), Query Frame = 0
Query:  585 QMRKRRRNDAFENGERENRTPFKRVRVEDVFFKDDRLRDNSFFSKRDTYGSRAHRDLAVTKGKGFRKEKTKKKRLNHHGGRLSFEVNSYKFSDDSD 680
            Q RKR R D   +  REN  PFKRV+VEDV FKDDRL+DN+FFSKRDT+GSRAHRDL VTKGKGFRKEKTKKKRLNHHGGRLS EVNS+KF DDSD
Sbjct:  577 QKRKRTRKDETSSAIRENPKPFKRVKVEDVVFKDDRLKDNTFFSKRDTFGSRAHRDLVVTKGKGFRKEKTKKKRLNHHGGRLSLEVNSFKFPDDSD 672          
BLAST of Ggra7175.t1 vs. uniprot
Match: R7QJ02 (SRP40_C domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QJ02_CHOCR)

HSP 1 Score: 103 bits (258), Expect = 1.220e-19
Identity = 55/83 (66.27%), Postives = 67/83 (80.72%), Query Frame = 0
Query:  587 RKRRRNDAFENGERENRTPFKRVRVEDVFFKDDRLRDNSFFSKRDTYGSRAHRDLAVTKGKGFRKEKTKKKRLNHHGGRLSFE 669
            ++RRRN+ F NG R   +PFKRVR E V + D RLRDN+F+SK D++G RAH DL VT+GKGFRKEKTKKKRLNHHGG LS++
Sbjct:  413 KRRRRNENF-NG-RFTPSPFKRVREETVVYSDSRLRDNTFYSKNDSFGVRAHNDLIVTRGKGFRKEKTKKKRLNHHGGTLSYQ 493          
BLAST of Ggra7175.t1 vs. uniprot
Match: A0A507BUM6 (SRP40_C domain-containing protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507BUM6_9FUNG)

HSP 1 Score: 87.0 bits (214), Expect = 2.200e-15
Identity = 44/80 (55.00%), Postives = 61/80 (76.25%), Query Frame = 0
Query:  604 TPFKRVRVEDVFFKDDRLRDNSFFSKRDTYGSRAHRDLAVTKGKGFRKEKTKKKRLNHHGGRLSFEVNS---YKFSDDSD 680
            TPF+RV++++V + D+ L+DNSF SK D YG RAH+DL VT+GKGFR EKTKKKR ++ GG +   V+S   +K+SDD +
Sbjct:  177 TPFQRVKIDEVTYFDESLKDNSFHSKTDEYGMRAHQDLIVTRGKGFRAEKTKKKRGSYRGGPIDTSVSSSFKFKYSDDEE 256          
BLAST of Ggra7175.t1 vs. uniprot
Match: A0A1Y1XXA5 (SRP40_C domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1XXA5_9FUNG)

HSP 1 Score: 79.0 bits (193), Expect = 3.770e-14
Identity = 42/78 (53.85%), Postives = 55/78 (70.51%), Query Frame = 0
Query:  604 TPFKRVRVEDVFFKDDRLRDNSFFSKRDT---YGSRAHRDLAVTKGKGFRKEKTKKKRLNHHGGRLSFEVNSYKFSDD 678
            TPF R++ EDV F D+RL DN+F SK  +   YG +AH DL VT+GKGF KEK KKKR ++ GG++  E +S KF+ D
Sbjct:   25 TPFCRIKDEDVVFHDERLMDNTFMSKGGSLGSYGHKAHNDLIVTRGKGFTKEKNKKKRGSYRGGKIDLESHSIKFNFD 102          
BLAST of Ggra7175.t1 vs. uniprot
Match: A0A137NPQ1 (SRP40_C domain-containing protein n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137NPQ1_CONC2)

HSP 1 Score: 82.4 bits (202), Expect = 6.300e-14
Identity = 45/86 (52.33%), Postives = 57/86 (66.28%), Query Frame = 0
Query:  595 FENGERENRTPFKRVRVEDVFFKDDRLRDNSFFSKRDTYGS---RAHRDLAVTKGKGFRKEKTKKKRLNHHGGRLSFEVNSYKFSD 677
            F    R+ +  F R+R EDV F D RL+DN+F SK   YGS   +AH DL VTKGKGF KEK KKKR ++ GG++ F+ +S KF D
Sbjct:  156 FNQNGRQQKERFCRIREEDVTFHDSRLKDNTFLSKGGAYGSYGMKAHEDLIVTKGKGFTKEKNKKKRGSYRGGQIDFQSHSIKFDD 241          
BLAST of Ggra7175.t1 vs. uniprot
Match: A0A067N6K2 (SRP40_C domain-containing protein n=1 Tax=Botryobasidium botryosum FD-172 SS1 TaxID=930990 RepID=A0A067N6K2_9AGAM)

HSP 1 Score: 82.4 bits (202), Expect = 6.660e-14
Identity = 42/80 (52.50%), Postives = 59/80 (73.75%), Query Frame = 0
Query:  600 RENRTPFKRVRVEDVFFKDDRLRDNSFFSK---RDTYGSRAHRDLAVTKGKGFRKEKTKKKRLNHHGGRLSFEVNSYKFS 676
            R++ TPF+RV+ +D+ F D+RL+DNSF S+      YG RA RDL VT+G GFRKEK KKKR ++HGG ++ + +S KF+
Sbjct:  165 RKSNTPFQRVKADDIVFHDNRLKDNSFQSRGAGTGDYGERASRDLIVTRGAGFRKEKNKKKRGSYHGGEITMQSHSIKFT 244          
BLAST of Ggra7175.t1 vs. uniprot
Match: A0A1Y3N7M8 (SRP40_C domain-containing protein (Fragment) n=2 Tax=Piromyces TaxID=4821 RepID=A0A1Y3N7M8_PIRSE)

HSP 1 Score: 76.3 bits (186), Expect = 1.530e-13
Identity = 40/75 (53.33%), Postives = 54/75 (72.00%), Query Frame = 0
Query:  607 KRVRVEDVFFKDDRLRDNSFFSKRD---TYGSRAHRDLAVTKGKGFRKEKTKKKRLNHHGGRLSFEVNSYKFSDD 678
            KR++ EDV F D+RL+DNSF +K     +YG +AHRDL VT+GKGFR EK KKKR ++ GG++    +S KF+ D
Sbjct:    1 KRIKDEDVVFLDERLKDNSFMAKGGAVGSYGEKAHRDLIVTRGKGFRNEKNKKKRGSYRGGKIDLASHSIKFNID 75          
BLAST of Ggra7175.t1 vs. uniprot
Match: A0A4Q9N8L4 (SRP40, C-terminal domain-containing protein n=1 Tax=Dichomitus squalens TaxID=114155 RepID=A0A4Q9N8L4_9APHY)

HSP 1 Score: 76.6 bits (187), Expect = 2.310e-13
Identity = 40/81 (49.38%), Postives = 58/81 (71.60%), Query Frame = 0
Query:  600 RENRTPFKRVRVEDVFFKDDRLRDNSFFSK---RDTYGSRAHRDLAVTKGKGFRKEKTKKKRLNHHGGRLSFEVNSYKFSD 677
            R++ TPF+R++V+ V F D+RL+DN F ++      YG+RA RDL VT+G GFRKEK KKKR ++ GG ++ +  S KF+D
Sbjct:   21 RKSNTPFQRIKVDQVKFADERLKDNRFEARGAAESDYGARASRDLMVTRGAGFRKEKNKKKRGSYKGGEITMQSYSIKFTD 101          
BLAST of Ggra7175.t1 vs. uniprot
Match: A0A165QPU2 (SRP40_C domain-containing protein n=1 Tax=Daedalea quercina L-15889 TaxID=1314783 RepID=A0A165QPU2_9APHY)

HSP 1 Score: 76.3 bits (186), Expect = 4.040e-13
Identity = 40/81 (49.38%), Postives = 58/81 (71.60%), Query Frame = 0
Query:  600 RENRTPFKRVRVEDVFFKDDRLRDNSFFSK---RDTYGSRAHRDLAVTKGKGFRKEKTKKKRLNHHGGRLSFEVNSYKFSD 677
            R++ TPF+R++ +D+ F D+RL+DN+F S+      YG RA RDL VT+G GFRKEK KKKR ++ GG ++ +  S KF+D
Sbjct:   30 RKSNTPFQRIKADDIKFVDERLKDNTFESRGAGAGDYGERAARDLIVTRGAGFRKEKNKKKRGSYRGGDITMQSFSIKFTD 110          
BLAST of Ggra7175.t1 vs. uniprot
Match: A0A1Y2EWH2 (SRP40_C domain-containing protein n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2EWH2_9FUNG)

HSP 1 Score: 84.0 bits (206), Expect = 4.760e-13
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 0
Query:  604 TPFKRVRVEDVFFKDDRLRDNSFFSKRD---TYGSRAHRDLAVTKGKGFRKEKTKKKRLNHHGGRLSFEVNSYKFS 676
            TPFKR++ EDV F D+RL+DNSF +K     +YG +AHRDL VT+GKGFR EK KKKR ++ GG++  + +S KF+
Sbjct:  705 TPFKRIKDEDVVFLDERLKDNSFMAKGGAIGSYGEKAHRDLIVTRGKGFRNEKNKKKRGSYRGGKIDLQSHSIKFN 780          
The following BLAST results are available for this feature:
BLAST of Ggra7175.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IIQ01.300e-3379.17Nucleolar and coiled-body phosphoprotein 1 n=1 Tax... [more]
R7QJ021.220e-1966.27SRP40_C domain-containing protein n=1 Tax=Chondrus... [more]
A0A507BUM62.200e-1555.00SRP40_C domain-containing protein n=1 Tax=Synchytr... [more]
A0A1Y1XXA53.770e-1453.85SRP40_C domain-containing protein n=1 Tax=Basidiob... [more]
A0A137NPQ16.300e-1452.33SRP40_C domain-containing protein n=1 Tax=Conidiob... [more]
A0A067N6K26.660e-1452.50SRP40_C domain-containing protein n=1 Tax=Botryoba... [more]
A0A1Y3N7M81.530e-1353.33SRP40_C domain-containing protein (Fragment) n=2 T... [more]
A0A4Q9N8L42.310e-1349.38SRP40, C-terminal domain-containing protein n=1 Ta... [more]
A0A165QPU24.040e-1349.38SRP40_C domain-containing protein n=1 Tax=Daedalea... [more]
A0A1Y2EWH24.760e-1355.26SRP40_C domain-containing protein n=1 Tax=Neocalli... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007718Srp40, C-terminalPFAMPF05022SRP40_Ccoord: 605..675
e-value: 4.1E-21
score: 75.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 143..162
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 107..136
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 531..556
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 390..430
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 182..203
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 501..530
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 584..604
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 72..604
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 371..389
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 340..370
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..106
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 163..181
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 216..283
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 469..494
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 431..448
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 557..583
NoneNo IPR availablePANTHERPTHR23216NUCLEOLAR AND COILED-BODY PHOSPHOPROTEIN 1coord: 176..677

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000871_piloncontigtig00000871_pilon:121264..123522 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7175.t1Ggra7175.t1Gracilaria gracilis GNS1m malemRNAtig00000871_pilon 121264..123522 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7175.t1 ID=Ggra7175.t1|Name=Ggra7175.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=681bp
MVGQAAEKDRQTHKKAAKGRPFPDWGSNSLCSLVYNNFRKAGFIHSSSAF
ADDCKQDWKTGESILQEAFKAFRSNIPDPSQKLSDKTRLKKQTNQELKEK
PPLKSKHPQSDSSSSDSSSSASSSSDSSSSSEAQHARGLKRTPAAASSSS
SSSTSSESESSSVSQDDRQKGVKKDISSSDSDSQSDSESSQSETSSSSES
VVEPAVKKKTVHLAKSANSSKKPRSSKQVSASIQKSDAESSSSVSDSDDS
SSSSSDSSSARASGESSSSSTGSSSSSSSAEKADAIPSARPGLGSKGAVK
RVSAESESSSESESPAKRKKPTRPKLKSKDSKPESSGESESESSSESSSE
SSSESSSESSSESSSESSSCDTRKPTEKLQKKADKSKSSGPSKTAKQNGT
IPKLRSSEDTSSSSSSSASSSSSTSSSESSRKPGPKEKAIRADSSDDDDS
DTSSSSSESSDDSGTNARKSRASKAMKNNHNSKSSSPSESSDDESSDSNL
SRKLESISPAASGNSKRKIQRTGKTNKENGSPASSKKHGRVEREEAASKW
EPKSGKSDAKLNSTLRDTPSQNGALSNGVSSEGSQMRKRRRNDAFENGER
ENRTPFKRVRVEDVFFKDDRLRDNSFFSKRDTYGSRAHRDLAVTKGKGFR
KEKTKKKRLNHHGGRLSFEVNSYKFSDDSD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007718Srp40_C