Ggra7172.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7172.t1
Unique NameGgra7172.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length2128
Homology
BLAST of Ggra7172.t1 vs. uniprot
Match: A0A2V3IIL4 (DRBM domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IIL4_9FLOR)

HSP 1 Score: 506 bits (1304), Expect = 7.420e-151
Identity = 261/496 (52.62%), Postives = 352/496 (70.97%), Query Frame = 0
Query: 1632 EVDAIPCDEEEDGVDYVSCLNQLPQKKKFVFIPNPRFEQVYVRGKGASGWRCTMIARLLNKSPTEEVETITIGRNKSRAKKAAAKELLSSLKSRVPELFSTESGGKQNTQAIRSQTALNALNLLVREGHLPIQPNCETEEVSENDEDRWRCSATLVTKDHGRKVFAEYGSSKSNARQKWARKALEILIELKSPGAEQYHCIIEPGRAPAKKTFASIPKASEVIVRTSDDEISNASGDDIVDDMDYSLELPNDYELVVAKSEFDCEKWFGAHAQPGAELGAFIDSKFARLSVDDSFGFDENDNESE-ELKRPILCFSTANSCIVIRIDKRQRRERESHSDHVSD-MFWVPEVVAEVLEDPKVQKVAVGGDDGLDLLFEYHGIQCESVQDIAVSSLAIAGYGRVGDSQDLSSLKDLTKFWMRKEAKVISWEGIWPAKRLLVEKWLGGDDKEVALAVLSAYATFCIREKVSDAARMKRMNAAGGPNDLEVLSGRIVEVG 2125
            EVD IP +E++D  D+VS LN++PQK+KF+ +  P+++ V VR  G SGW CTM A +L KSP E VE +++ RNK+RAK+AAAKE+L  LKS++PE F +E+ GKQ  Q +R  +A+NAL+ L +EG+LP QP  + EEV+E  E+ WRC+ TL T+DH  KVF EYG SK+ A+QK ARKALE +I+LKSPGA+Q+  ++ P      KT A+IP ASEVI +T DDE+S+ S DD+V+     LELP DYELV+A++E DC  WF AHAQPGA LG +IDS+ AR SV   F   E +   E E+K P+LCFS+AN+ IV+R+DKR+          V +  FWVP++VA+ LED +V+K A+  D+GLD LFE HGIQ + VQD+A++S+AIAG GR    +  SSL+ LTK+WMR+E K I+W+ +WP +  L +  LG D KE+A AVLSA+A  C+R K+SDAARMKR+N  G  NDL VL  R+++ G
Sbjct:  563 EVDEIPYEEDDDAEDHVSRLNEIPQKRKFIALARPQWQMVRVRSGGGSGWMCTMKATVLRKSPQEVVECVSVARNKNRAKRAAAKEMLLKLKSKLPEAFLSENQGKQTNQPVRMHSAVNALHQLAQEGNLPCQPGYDVEEVNEAGENHWRCTTTLFTRDHDSKVFVEYGPSKNAAKQKGARKALEAIIKLKSPGADQFQKLLLPAEIQPTKTMANIPGASEVIFQTGDDEMSHGSCDDLVEGTGLRLELPTDYELVIAETESDCLNWFSAHAQPGARLGIYIDSETARDSV---FRVSELEGNKEYEIKFPMLCFSSANAGIVVRVDKRESSPDAGGLSQVEENTFWVPDIVADTLEDARVEKAALACDEGLDELFERHGIQADGVQDVALTSIAIAGLGRFDGRRQFSSLRQLTKYWMRQEVKDINWQTLWPKRSELPKALLGTDAKELAAAVLSAFAVRCVRVKLSDAARMKRVNMGGASNDLVVLCKRVLDSG 1055          
BLAST of Ggra7172.t1 vs. uniprot
Match: A0A2V3J571 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J571_9FLOR)

HSP 1 Score: 238 bits (607), Expect = 1.830e-67
Identity = 130/216 (60.19%), Postives = 147/216 (68.06%), Query Frame = 0
Query: 1356 APGNTEVPRRNSLPDPALSNHEIRVPHFDTAPPVVGGPPFPHAFAVPTIPPGGQLRFDSVNMNRPGVNAANGNDNGMPNPHFGRGPSHLGQAPDERVHGLPPEALMQLNRF-HPPFLPFSPMTSMMGYQGQLPMQPNFLAHVPQMVVNPYLQSPGGSVYPHQSAHFNPAMNGIPISCNPFSVSPPTVPRPDHEGPSFPTRPTVPQTTPEARPEKVD 1570
            AP  T V +  ++PD  +S  ++RVP F T+ PVVG P  P AFAVPTIP G QLRFD  NMN  G NA  GN + + N  FG G  HL Q PDERVHGLPPEA +QLNRF H PFL    M  MMGYQG LP+QPNF+    QMVVNPYLQSPGGSV PHQS  FNPAMN +PIS NPFSV+ P V   DH+G +FP RP +PQT  E RP   D
Sbjct:   19 APATTHVHKPKTVPDTVVSIKQVRVP-FGTSLPVVGRPLSPPAFAVPTIPQGRQLRFDLANMNSLGANATTGNGHRVSNLRFGHGRPHLAQVPDERVHGLPPEAFLQLNRFPHLPFLALPHMAPMMGYQGPLPLQPNFVTKATQMVVNPYLQSPGGSVCPHQSTPFNPAMNDVPISGNPFSVNMPIVSTSDHKGATFPARPIIPQTNLEVRPSNED 233          
BLAST of Ggra7172.t1 vs. uniprot
Match: A0A2V3IU14 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IU14_9FLOR)

HSP 1 Score: 223 bits (567), Expect = 5.330e-63
Identity = 109/166 (65.66%), Postives = 129/166 (77.71%), Query Frame = 0
Query: 1956 IDKRQRRERESHSDHVSDMFWVPEVVAEVLEDPKVQKVAVGGDDGLDLLFEYHGIQCESVQDIAVSSLAIAGYGRVGDSQDLSSLKDLTKFWMRKEAKVISWEGIWPAKRLLVEKWLGGDDKEVALAVLSAYATFCIREKVSDAARMKRMNAAGGPNDLEVLSGRI 2121
            + K    E +S+ DHV   FWVP+V  +VLED +VQK A+ GD  LDLLFE+HGIQCES+ + +VSSLAIAGYGRV DSQ+LS+L +LT+ WMR+EA+ ISWE IWP K LLVEKWLGGDDKEVAL VLSAYATFC+REK+ DAARMKR N  G  N L V S R+
Sbjct:   12 LPKITEAENDSNFDHVHHTFWVPKVATKVLEDSRVQKAAIAGDYWLDLLFEHHGIQCESIHEFSVSSLAIAGYGRVDDSQNLSTLTELTEEWMRQEARAISWEEIWPKKHLLVEKWLGGDDKEVALGVLSAYATFCVREKLCDAARMKRRNNPGAVNGLHVFSTRM 177          
BLAST of Ggra7172.t1 vs. uniprot
Match: A0A2V3ILD4 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ILD4_9FLOR)

HSP 1 Score: 229 bits (583), Expect = 6.950e-57
Identity = 214/679 (31.52%), Postives = 317/679 (46.69%), Query Frame = 0
Query:  392 QRHQVDIRELRAAEDQYLTLLRSLFALASQAQ-----QDGRRRDGLSGTELKLYMKKRVLAAFATHTRERASVLSKKALKLLTQFKLCGSDAARLARLTNTDARGALLPV-------------RRSKKSEVRREDISGLKPMLLSWERLRSGEKVNTDQFHTDVIHLKCIAEALEDSTQISISNGEAYALFRELVLVNTGIELIYDTISELKTV-YKSGNHECVRPWLRSTDGILKWHDYMRSRMVNLLTVAEEPLSSELRTYCKTFVKLGTDPPDDQKSKYKMTEGIKMARKLRELKKLIKSLGQDEQGNDLPIEDEFCVKTTALLTTATKSFARLVRQMTTLSATPKRTAEGNGDGSGGSSREGSPESKTRRGDDGGRQ-------------------------KRQADSRAKFDEIKRCLDKDSEARSGLKKVATNQ-EKVRDRAMKDARATGDXXXXXXXXXXXXXXRGRGSEGDEAKADRSLRSIPRRPAREDN-GAASARANGARSNGGGVVVGERWRKKSGPAATVQRMLANAAAPAGEKSKKRKRERGEGILQSHEKEALDEQGMRADRQKRKRIRFD-EQRDVSGNEPAADKESLRTLFSDGESWMLSGNAVQKEAIEERNGRLSREAVDTWFGFLRVFVWQHKCMKEGRTFVRPRYLPNPTTPSAIREL 1023
            QR  +    +R AE+QY  L+ S+F L+SQ       +  R+ +     EL    K+R + A  +H     + LSKK L          S    L+  +N   +  LLP              RRS + EV++ DI   K M  SWE       V   QF  D +HLKC+ EAL +  ++ +SN +   +FRE +    GIE+I + IS   T  +K  +   ++ WLR+T+ IL W  Y+ +RM  LL V EEPL+SEL  +C  F +     P    ++    +G+K+A  LR LKK++ +L  +E+      + +   K TA L+   +SF RL   M   +  P   A          SR  +  S+TR  D   R+                         +R+ D R +   +        E  + L+   TNQ +++R  A+   R + +              R RG          S  SIPR+P+  DN G A  ++  +++N       +R R  +GPAATV RMLA+A +     SKKRKR  G+GILQ+   EA  + GMR +R KR ++RF  E      + P  DKE+++TLFSDG   + + NA+Q+ A+ ER  +LSR +V   FGFLR FV   K    G+  +    + +P  PSAIR L
Sbjct:  555 QRDSILASNVRVAENQYFILIDSIFTLSSQIMGLRWHKSSRKTEN----ELVSTWKRRTMEAIVSHYGNTRTALSKKRLH---------SSENNLS--SNRVQKYPLLPAPSDFRKSRAANFSRRSTRFEVQQSDIRSFKDMFQSWEECMGEGPVQ--QFQADALHLKCVTEALREGKRVFLSNEDVLPMFREFIYAKIGIEVITEKISMTSTNRHKVDSFPSIQSWLRTTESILSWFAYLGNRMEVLLKVKEEPLASELAAFCAEFTRRLLSSPTQVNTE--KGDGLKIAGSLRSLKKVVATLPSNEEIASSAQKSQHANKLTAFLSQYVQSFRRLSVTMARHAMPPSPDA----------SRSETSRSETRSEDPAQRKGALSAREDSSSIAQIAPEGHSRVESRRKQDVREERAVLPGVAKVVPEPGNSLQYKGTNQGDRLRRGAVNLQRFSSEAMNKRGSDHSAHTERARGRNAQRDAPATSFPSIPRKPSNVDNTGRARVQSRPSQNND---TTSKRVR--TGPAATVHRMLADATSDTLVGSKKRKR--GDGILQNFNDEAFGDNGMRLNRPKRTKVRFGGESEGKKADLP--DKETIKTLFSDGSDLLGARNALQEAAVSERARKLSRRSVSRCFGFLRTFVSDLKSELIGQPHIPSDVISDPYPPSAIRNL 1195          
BLAST of Ggra7172.t1 vs. uniprot
Match: A0A2V3J3V8 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3V8_9FLOR)

HSP 1 Score: 158 bits (399), Expect = 3.830e-41
Identity = 72/106 (67.92%), Postives = 88/106 (83.02%), Query Frame = 0
Query: 1963 ERESHSDHVSDMFWVPEVVAEVLEDPKVQKVAVGGDDGLDLLFEYHGIQCESVQDIAVSSLAIAGYGRVGDSQDLSSLKDLTKFWMRKEAKVISWEGIWPAKRLLV 2068
            E +S+ DHV D FWVPEV A+VLED +VQK A+ G D  DLLFE+HGIQCES+ D++VSSLA+AGYGRVGDSQ+LS+  +LT++WMRKEA+ ISWE IWP K LLV
Sbjct:   19 ENDSNLDHVQDKFWVPEVAAKVLEDSRVQKAAIAGVDWFDLLFEHHGIQCESIHDVSVSSLAVAGYGRVGDSQNLSNSTELTEYWMRKEARAISWEEIWPKKHLLV 124          
BLAST of Ggra7172.t1 vs. uniprot
Match: A0A2V3IEY0 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEY0_9FLOR)

HSP 1 Score: 153 bits (387), Expect = 5.680e-39
Identity = 82/138 (59.42%), Postives = 93/138 (67.39%), Query Frame = 0
Query: 1357 PGNTEVPRRNSLPDPALSNHEIRVPHFDTAPPVVGGPPFPHAFAVPTIPPGGQLRFDSVNMNRPGVNAANGNDNGMPNPHFGRGPSHLGQAPDERVHGLPPEALMQLNRF-HPPFLPFSPMTSMMGYQGQLPMQPNFL 1493
            P  T V +  ++PDP +S  + RVP F T+PPVVG P FP AFAVPTIP G QLRFD  NMN  G NA   ND+ + NP FG    HL Q PD RVHGL PEA++QLNRF HPPFL    M  MMGYQ  LP+QPNFL
Sbjct:   20 PATTHVHKPKTVPDPVVSIQQFRVP-FGTSPPVVGRPSFPPAFAVPTIPQGRQLRFDPANMNSLGANATTRNDHRVSNPRFGHERPHLAQVPDGRVHGLSPEAILQLNRFPHPPFLALPHMAPMMGYQSPLPLQPNFL 156          
The following BLAST results are available for this feature:
BLAST of Ggra7172.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2V3IIL47.420e-15152.62DRBM domain-containing protein n=1 Tax=Gracilariop... [more]
A0A2V3J5711.830e-6760.19Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IU145.330e-6365.66Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3ILD46.950e-5731.52Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J3V83.830e-4167.92Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IEY05.680e-3959.42Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1925..2098
e-value: 5.0E-6
score: 28.1
NoneNo IPR availableGENE3D3.30.160.20coord: 1644..1731
e-value: 2.6E-6
score: 29.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1220..1236
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1241..1255
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1326..1360
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1535..1638
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 890..948
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..166
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 717..765
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 717..738
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 92..164
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 184..236
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1272..1291
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1075..1381
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1145..1163
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 780..860
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 874..948
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1590..1612
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 780..845
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 184..274
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 739..765
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1176..1194
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1535..1551

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000871_piloncontigtig00000871_pilon:106708..113288 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7172.t1Ggra7172.t1Gracilaria gracilis GNS1m malemRNAtig00000871_pilon 106708..113288 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7172.t1 ID=Ggra7172.t1|Name=Ggra7172.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=2128bp
MPRSVYVVKGEGVRDSVWTPKTALSAASLAHSPELVQTVPSPNCSVNPVV
QVFVQPPISAGRLAQTTAALCIPNNAITTPLVAPGVPSTSPNPHVAPTLA
RRQVNPPNTHPTQQPASSTNAQAASHVPGGLASSPNQPPALNPQNLAGSR
QTGRAATSTRPPFPAYNRSPMVCTVLEKQRSIRIAATPASSVPTKSTTPT
PAQNRPLDGSLGHQQVHRNANAHNGPTSSTLRPPVLTMRSAPTGAQKDRP
KSPTSPVKPPHTTKKLSAADEAYAREKRRVLGNIVERRIAHHREKLAEKS
RPLTPISKLIEVAAQSKSSAKKNLDSEIGVLSDRVENAHIEAPVVANMET
TQDVARPSTSADDIKRPSSREDGFANTNTVPTVAPSVELIPQRHQVDIRE
LRAAEDQYLTLLRSLFALASQAQQDGRRRDGLSGTELKLYMKKRVLAAFA
THTRERASVLSKKALKLLTQFKLCGSDAARLARLTNTDARGALLPVRRSK
KSEVRREDISGLKPMLLSWERLRSGEKVNTDQFHTDVIHLKCIAEALEDS
TQISISNGEAYALFRELVLVNTGIELIYDTISELKTVYKSGNHECVRPWL
RSTDGILKWHDYMRSRMVNLLTVAEEPLSSELRTYCKTFVKLGTDPPDDQ
KSKYKMTEGIKMARKLRELKKLIKSLGQDEQGNDLPIEDEFCVKTTALLT
TATKSFARLVRQMTTLSATPKRTAEGNGDGSGGSSREGSPESKTRRGDDG
GRQKRQADSRAKFDEIKRCLDKDSEARSGLKKVATNQEKVRDRAMKDARA
TGDIRKRGVIDERRTVDRGRGSEGDEAKADRSLRSIPRRPAREDNGAASA
RANGARSNGGGVVVGERWRKKSGPAATVQRMLANAAAPAGEKSKKRKRER
GEGILQSHEKEALDEQGMRADRQKRKRIRFDEQRDVSGNEPAADKESLRT
LFSDGESWMLSGNAVQKEAIEERNGRLSREAVDTWFGFLRVFVWQHKCMK
EGRTFVRPRYLPNPTTPSAIRELCAESSPRRFNHLRVRSVIKSFAHFFTS
LAAFVKYNMEQFTYESFSDWEAEPFEKELDDEVPQPTPARLSFVLVEDDE
PSDVRPTNGKLASSPEARAKRTSPTRPPQPSKKRRTHHTTPARDPSRMPK
SSPPNNLAAPSRKTPTHNAEVDVGVPVYDHNDRIPRHTRTHSIPPEESAH
LNFSLEKEGVFAAKRTPPTPKPADVRRSKADGFERPISHGSRTPASVSLG
TRVARKTPSSALRRTEAAVSEQDPLRSRTSTRISNASKLSKPLEANKHRA
SQMNPHVPPTTNPGRLAAHPRGNQQRRHSGPASARRNETSSTIQHTTNNH
AQNAGAPGNTEVPRRNSLPDPALSNHEIRVPHFDTAPPVVGGPPFPHAFA
VPTIPPGGQLRFDSVNMNRPGVNAANGNDNGMPNPHFGRGPSHLGQAPDE
RVHGLPPEALMQLNRFHPPFLPFSPMTSMMGYQGQLPMQPNFLAHVPQMV
VNPYLQSPGGSVYPHQSAHFNPAMNGIPISCNPFSVSPPTVPRPDHEGPS
FPTRPTVPQTTPEARPEKVDTPPSAEPTKESANNIEKPRISSDSDMDGRA
KTANEDGQSKKNKKHPAKKSQTKKPLETSQNEVDAIPCDEEEDGVDYVSC
LNQLPQKKKFVFIPNPRFEQVYVRGKGASGWRCTMIARLLNKSPTEEVET
ITIGRNKSRAKKAAAKELLSSLKSRVPELFSTESGGKQNTQAIRSQTALN
ALNLLVREGHLPIQPNCETEEVSENDEDRWRCSATLVTKDHGRKVFAEYG
SSKSNARQKWARKALEILIELKSPGAEQYHCIIEPGRAPAKKTFASIPKA
SEVIVRTSDDEISNASGDDIVDDMDYSLELPNDYELVVAKSEFDCEKWFG
AHAQPGAELGAFIDSKFARLSVDDSFGFDENDNESEELKRPILCFSTANS
CIVIRIDKRQRRERESHSDHVSDMFWVPEVVAEVLEDPKVQKVAVGGDDG
LDLLFEYHGIQCESVQDIAVSSLAIAGYGRVGDSQDLSSLKDLTKFWMRK
EAKVISWEGIWPAKRLLVEKWLGGDDKEVALAVLSAYATFCIREKVSDAA
RMKRMNAAGGPNDLEVLSGRIVEVGAG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf