Ggra7164.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7164.t1
Unique NameGgra7164.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length321
Homology
BLAST of Ggra7164.t1 vs. uniprot
Match: A0A2V3ITN1 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITN1_9FLOR)

HSP 1 Score: 319 bits (818), Expect = 2.760e-105
Identity = 178/274 (64.96%), Postives = 197/274 (71.90%), Query Frame = 0
Query:   65 QPDRIHYTNEFHVYRKARANGNGITKRARCNHCNGDWAYNETRLKHHIIDLYRGCRRVPPEIRERIRAADEQN-NASAXXXXXXXXXXXXXXXXXHAA----------PILGAHISPHQPLPPAKRKREASLSAMARASCSPQPLRAAPGVVALSAERGVGAQL-------------CGGATHDVQPNGSGADESLVRVAVEFSMTSGGLLRATWIASELISEFHREILDVGLIPRTAENTFNIWIGGKIAWSRGVGQPLPDYDHLRPIIRNQC 314
            Q +RIHYTNEFH+Y+KARANG+G TKRARCNHC  DWA+NETRLKHHI D YRGCRRVPPE+RERIRAAD QN   SA      XXXXX      + A          P+LG HISPHQPLPP KRKREASL+ +A  + + Q L+ A       +E  +G  L              GG+T     N +G D   VRVAVEFSMTSGGLLRATWIASELISEFHR+ILDVGLIPRT+ENTFNIWIGGKIAWSRGVGQPLPDYDHLRPIIRNQC
Sbjct:   37 QTERIHYTNEFHIYQKARANGSGFTKRARCNHCENDWAFNETRLKHHITDPYRGCRRVPPEVRERIRAADAQNAGTSAASLRAAXXXXXTSTLVQNTAVAATQAAIHAPLLGTHISPHQPLPPTKRKREASLTNLATPTTTAQQLQGA------HSEAEIGVHLPPSSEAHSPLVAAAGGSTLGTNSNNNGTD---VRVAVEFSMTSGGLLRATWIASELISEFHRDILDVGLIPRTSENTFNIWIGGKIAWSRGVGQPLPDYDHLRPIIRNQC 301          
BLAST of Ggra7164.t1 vs. uniprot
Match: SelT/SelW/SelH family protein n=3 Tax=Cycloclasticus TaxID=34067 RepID=UPI0011D1999E (SelT/SelW/SelH family protein n=3 Tax=Cycloclasticus TaxID=34067 RepID=UPI0011D1999E)

HSP 1 Score: 58.9 bits (141), Expect = 1.420e-7
Identity = 29/83 (34.94%), Postives = 46/83 (55.42%), Query Frame = 0
Query:  238 RVAVEFSMTSGGLLRATWIASELISEFHREILDVGLIPRTAENTFNIWIGGKIAWSRGVGQPLPDYDHLRPIIRNQCCQAPSV 320
            R+ +++      LLRA W+A EL++ F  E+  V LIP +   TF I I GK  WSR + Q  P+   ++  +R++ C   S+
Sbjct:    8 RIEIQYCTQCRWLLRAAWLAQELLTTFEEELGGVTLIPASG-GTFEITINGKQLWSRKLAQRFPEAKEIKQRVRDELCPDKSL 89          
BLAST of Ggra7164.t1 vs. uniprot
Match: D8K799 (Uncharacterized protein n=5 Tax=Nitrosococcus TaxID=1227 RepID=D8K799_NITWC)

HSP 1 Score: 57.8 bits (138), Expect = 3.240e-7
Identity = 29/76 (38.16%), Postives = 43/76 (56.58%), Query Frame = 0
Query:  238 RVAVEFSMTSGGLLRATWIASELISEFHREILDVGLIPRTAENTFNIWIGGKIAWSRGVGQPLPDYDHLRPIIRNQ 313
            +V +++      LLRA WIA EL++ F +EI ++ L P T    FNI   GK+ WSR      P+   L+ ++RNQ
Sbjct:    4 KVEIQYCTGCRWLLRAAWIAQELLTTFEQEISELTLRPGTG-GVFNILANGKLVWSRKEAGRFPEITELKRLVRNQ 78          
BLAST of Ggra7164.t1 vs. uniprot
Match: A0A3A0A5R6 (Selenoprotein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3A0A5R6_9CHLR)

HSP 1 Score: 57.0 bits (136), Expect = 6.250e-7
Identity = 28/76 (36.84%), Postives = 44/76 (57.89%), Query Frame = 0
Query:  238 RVAVEFSMTSGGLLRATWIASELISEFHREILDVGLIPRTAENTFNIWIGGKIAWSRGVGQPLPDYDHLRPIIRNQ 313
            RVA+ +      LLRA W+A EL++ F +EI +V LIP +    F +++G    WSRG     PD   L+ ++R++
Sbjct:    6 RVAIRYCTQCRWLLRAAWMAQELLTTFEQEIGEVALIPGSG-GVFEVFVGETRIWSRGEEGRFPDIKELKQLVRDR 80          
BLAST of Ggra7164.t1 vs. uniprot
Match: A0A4R2GPX3 (Selenoprotein W-related protein n=1 Tax=Camelimonas lactis TaxID=659006 RepID=A0A4R2GPX3_9HYPH)

HSP 1 Score: 57.0 bits (136), Expect = 6.570e-7
Identity = 30/83 (36.14%), Postives = 46/83 (55.42%), Query Frame = 0
Query:  238 RVAVEFSMTSGGLLRATWIASELISEFHREILDVGLIPRTAENTFNIWIGGKIAWSRGVGQPLPDYDHLRPIIRNQCCQAPSV 320
            RV++EF      LLRA W+A EL+S F +++ +V L+PRT    F I +   + W R V    PD  +L+  +R+    A S+
Sbjct:    5 RVSIEFCTQCQWLLRAAWMAQELLSTFGQDLGEVALLPRTG-GVFRIQVNDSLIWDRAVDGGFPDARNLKQRVRDLIDPARSL 86          
BLAST of Ggra7164.t1 vs. uniprot
Match: A0A2W4RGJ2 (Selenoprotein W-related protein n=1 Tax=Candidatus Methylumidiphilus alinenensis TaxID=2202197 RepID=A0A2W4RGJ2_9GAMM)

HSP 1 Score: 56.6 bits (135), Expect = 8.370e-7
Identity = 30/76 (39.47%), Postives = 42/76 (55.26%), Query Frame = 0
Query:  238 RVAVEFSMTSGGLLRATWIASELISEFHREILDVGLIPRTAENTFNIWIGGKIAWSRGVGQPLPDYDHLRPIIRNQ 313
            RV +EF      LLRA W+A EL++ F  EI +V LIP T    F +  GG++ WSR      P+   L+  +R+Q
Sbjct:    6 RVEIEFCTQCRWLLRAAWLAQELLTTFETEIGEVALIPGTG-GIFEVRCGGQVLWSRKQEGRFPEAKELKQRVRDQ 80          
BLAST of Ggra7164.t1 vs. uniprot
Match: SelT/SelW/SelH family protein n=1 Tax=Microlunatus capsulatus TaxID=99117 RepID=UPI001AE45B22 (SelT/SelW/SelH family protein n=1 Tax=Microlunatus capsulatus TaxID=99117 RepID=UPI001AE45B22)

HSP 1 Score: 57.0 bits (136), Expect = 1.030e-6
Identity = 28/94 (29.79%), Postives = 48/94 (51.06%), Query Frame = 0
Query:  227 PNGSGADESLVRVAVEFSMTSGGLLRATWIASELISEFHREILDVGLIPRTAENTFNIWIGGKIAWSRGVGQPLPDYDHLRPIIRNQCCQAPSV 320
            P    A  +  RV + +      LLRATW+ASEL++ F  ++ +V L+P T    F + +G  + W R V    P+   L+ ++R++     S+
Sbjct:    7 PAAPAATPASARVEITYCTQCRWLLRATWVASELLTTFGTDLAEVALVPGTG-GVFRVRLGEDVVWDRSVDGGFPELADLKRVVRDRVAPGRSL 99          
BLAST of Ggra7164.t1 vs. uniprot
Match: A0A2H6ALP9 (Uncharacterized protein n=2 Tax=Bacteria TaxID=2 RepID=A0A2H6ALP9_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 1.390e-6
Identity = 28/75 (37.33%), Postives = 42/75 (56.00%), Query Frame = 0
Query:  238 RVAVEFSMTSGGLLRATWIASELISEFHREILDVGLIPRTAENTFNIWIGGKIAWSRGVGQPLPDYDHLRPIIRN 312
            RV +E+      L+RA W+A EL++ F  EI +V LIP T    F I + GK+ WSR      P+   L+ ++R+
Sbjct:    6 RVEIEYCTKCRWLMRAAWVAQELLTTFESEIGEVALIPGTG-GVFEIRVDGKLIWSRKSQGRFPELKELKQLVRD 79          
BLAST of Ggra7164.t1 vs. uniprot
Match: K0BYV6 (Conserved hypothetical selenoprotein n=1 Tax=Cycloclasticus sp. (strain P1) TaxID=385025 RepID=K0BYV6_CYCSP)

HSP 1 Score: 55.5 bits (132), Expect = 1.530e-6
Identity = 27/71 (38.03%), Postives = 41/71 (57.75%), Query Frame = 0
Query:  250 LLRATWIASELISEFHREILDVGLIPRTAENTFNIWIGGKIAWSRGVGQPLPDYDHLRPIIRNQCCQAPSV 320
            +LRA W+A EL++ F  E+  V LIP +   TF I I GK  WSR + Q  P+   ++  +R++ C   S+
Sbjct:    1 MLRAAWLAQELLTTFEEELGGVTLIPASG-GTFEITINGKQLWSRKLAQRFPEAKEIKQRVRDELCPDKSL 70          
BLAST of Ggra7164.t1 vs. uniprot
Match: A0A1Y0FWF6 (SelT/selW/selH domain protein n=1 Tax=Cellvibrio sp. PSBB006 TaxID=1987723 RepID=A0A1Y0FWF6_9GAMM)

HSP 1 Score: 55.8 bits (133), Expect = 2.150e-6
Identity = 30/93 (32.26%), Postives = 46/93 (49.46%), Query Frame = 0
Query:  228 NGSGADESLVRVAVEFSMTSGGLLRATWIASELISEFHREILDVGLIPRTAENTFNIWIGGKIAWSRGVGQPLPDYDHLRPIIRNQCCQAPSV 320
            N S   ++  RV + +      +LRA W+A EL+S F  E+ +V L P T    F IW+ G + W R      P+   L+  +R+Q C   S+
Sbjct:    5 NLSAPPQATHRVVIHYCNLCRWMLRAAWLAQELLSTFDGELDEVALHPGTG-GVFEIWLDGVLVWERQRDGGFPEAKELKQRVRDQLCPDKSL 96          
The following BLAST results are available for this feature:
BLAST of Ggra7164.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A2V3ITN12.760e-10564.96Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
SelT/SelW/SelH family protein n=3 Tax=Cycloclasticus TaxID=34067 RepID=UPI0011D1999E1.420e-734.94SelT/SelW/SelH family protein n=3 Tax=Cycloclastic... [more]
D8K7993.240e-738.16Uncharacterized protein n=5 Tax=Nitrosococcus TaxI... [more]
A0A3A0A5R66.250e-736.84Selenoprotein n=1 Tax=Chloroflexi bacterium TaxID=... [more]
A0A4R2GPX36.570e-736.14Selenoprotein W-related protein n=1 Tax=Camelimona... [more]
A0A2W4RGJ28.370e-739.47Selenoprotein W-related protein n=1 Tax=Candidatus... [more]
SelT/SelW/SelH family protein n=1 Tax=Microlunatus capsulatus TaxID=99117 RepID=UPI001AE45B221.030e-629.79SelT/SelW/SelH family protein n=1 Tax=Microlunatus... [more]
A0A2H6ALP91.390e-637.33Uncharacterized protein n=2 Tax=Bacteria TaxID=2 R... [more]
K0BYV61.530e-638.03Conserved hypothetical selenoprotein n=1 Tax=Cyclo... [more]
A0A1Y0FWF62.150e-632.26SelT/selW/selH domain protein n=1 Tax=Cellvibrio s... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011893Selenoprotein, Rdx-typePFAMPF10262Rdxcoord: 238..312
e-value: 2.8E-9
score: 37.0
NoneNo IPR availableGENE3D3.40.30.10Glutaredoxincoord: 230..314
e-value: 1.4E-12
score: 49.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 169..188
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..70
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..60
NoneNo IPR availableSUPERFAMILY101447Formin homology 2 domain (FH2 domain)coord: 31..39
IPR036249Thioredoxin-like superfamilySUPERFAMILY52833Thioredoxin-likecoord: 237..314

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000062_piloncontigtig00000062_pilon:838638..839741 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7164.t1Ggra7164.t1Gracilaria gracilis GNS1m malemRNAtig00000062_pilon 838638..839741 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7164.t1 ID=Ggra7164.t1|Name=Ggra7164.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=321bp
MNFSAVSPDALDAPSAATPPTSPLAGGPPPPPPPPPPPPPPQQSQQPQQP
QPSVTPPPPPRRDEQPDRIHYTNEFHVYRKARANGNGITKRARCNHCNGD
WAYNETRLKHHIIDLYRGCRRVPPEIRERIRAADEQNNASANAAAVVSSA
AAVAAAAAHAAPILGAHISPHQPLPPAKRKREASLSAMARASCSPQPLRA
APGVVALSAERGVGAQLCGGATHDVQPNGSGADESLVRVAVEFSMTSGGL
LRATWIASELISEFHREILDVGLIPRTAENTFNIWIGGKIAWSRGVGQPL
PDYDHLRPIIRNQCCQAPSV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011893Selenoprotein_Rdx-typ
IPR036249Thioredoxin-like_sf