Ggra7106.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7106.t1
Unique NameGgra7106.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length610
Homology
BLAST of Ggra7106.t1 vs. uniprot
Match: A0A2V3ITB9 (Myocyte-specific enhancer factor 2D-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITB9_9FLOR)

HSP 1 Score: 258 bits (660), Expect = 3.690e-74
Identity = 232/653 (35.53%), Postives = 312/653 (47.78%), Query Frame = 0
Query:    1 MNSGNDPVQSTSSRPPAPQKRGKIQIRRIVDNRTRQVTFLKRKNGLLKKAMELGILCDCEIAVIVYNPHNGKLFEYSSIPMERVLNRYATYSGPMERRKPEQFFDIAAARAHSNIPVNEPNVAMAAQSASLAASRRPRPTYKFEEELDLPEAKRRKLSSGETPTFAVPTNGMQIPHIVN---------------------------NHVST--PAQHMTSRVNTSHSLNAPSPIHTVPLTQIVRVPHPLPVVP-TQYTTQQHGYGPDPMSSHHG---------PHNNYGTVASTQQMYHTTPTIPSLPGSSDGRNQVANFVHPHPTENQVHQAARISVPVDAYASVAPAQAYPPSSH--PSYQRQMPEIPPETIPPPETSIQLSQQVPYLEAEARVDDQHNPVADGNEVSHEVGQQSVEQHSHRYLKKERD--EPAESVEVSVSKTDNMDVPHTEALAEHLQMKQAEKP--SIGSHGSKDLKAS---HESPDKSRLSNKENEGTENLPLPRIEVRQEGTHPQTSTGALNI--TSRASPPPIPNLSDAIGSIPRLQIPPTPQGQPAWPSLNSLSSNDGGNSVSLTRFFNLDSSSTRRRNRNPFALPQNE---IIPLTPRXXXXXXXXX-RSLFQSSNNAPFVRGPSDKTGEEVE 599
            MN   +    +SS PP    R KI+I+RI DNR+RQVTFLKRKNGLLKKAMELGILCDCEIAVIVYN HNGKLFEYSSI M++VLNRYATYSGP ERRK + FFD+ AA+ +SNIPVNEPNVA AA++A+LAASRRPRPTYKF+E  D P    RKLSSGETP   V T   Q PH +                            NH+ T  PA  + S +   H  +A +    V ++Q+ ++P   P    T Y   Q     +P S H           P +N+ T  ST Q +      P  P  S   N  AN     P      QA   S    ++AS +  Q+    +H   +Y    P           T+ Q   +                       +HE      ++H +      R   +P E   ++ +   N+   H ++  E     +   P   +G   +++ +A     E   ++ L+      + + P    E R+      ++ GA     +       +P +S A+ ++P L    TP GQ  WP  NSL S DG N++ LT FFN+DS STR R+ NPFA+  ++    +PLTPR          RSL Q     P   G S + G++ E
Sbjct:    1 MNPDKENYHPSSSIPPTQDGRRKIRIQRIQDNRSRQVTFLKRKNGLLKKAMELGILCDCEIAVIVYNVHNGKLFEYSSIDMDKVLNRYATYSGPSERRKKDSFFDLQAAKGYSNIPVNEPNVANAARNAALAASRRPRPTYKFQEPDDKPHG--RKLSSGETPVVMVHTPHTQ-PHALQEQHAAKKVKTNYGQINIAPKPCTPAFANHLPTLHPATPVESAI---HQQSAVNDARRVYISQLQQIPLATPAPSFTNYDPIQANN--NPFSQHCARKDNALRIPPGSNWQTPRSTGQQHFRPSETPIHPHYSSHMNAYAN-----PNNQSQAQAGDYS----SHASASQIQSDWSRAHRNDTYLSSTPTT---------TNQQHRSEKAXXXXXXXXXXXXXXXXXXXXFAHETTDIQQDRHINDNSANSRGFHQPTEP-SLAPNPAHNLVASHNDSGIETGAKAKLGLPHRDLGEQTNQEYRADCGRREDGIRALLN------SSSSPHAESECREGTAQHASAAGAAGQLQSENGQQSAMPTISQALRTVPPLHFATTPHGQATWP--NSLPSADGENAIPLTPFFNMDSFSTRGRSVNPFAMSSSKNMGFLPLTPRFFGMDPMQSTRSLSQPRALTPASGGESSQQGKDQE 618          
BLAST of Ggra7106.t1 vs. uniprot
Match: A0A2V3J9R8 (Myocyte-specific enhancer factor 2D n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J9R8_9FLOR)

HSP 1 Score: 214 bits (544), Expect = 1.450e-57
Identity = 109/159 (68.55%), Postives = 131/159 (82.39%), Query Frame = 0
Query:    5 NDPVQSTSSRPPAPQKRGKIQIRRIVDNRTRQVTFLKRKNGLLKKAMELGILCDCEIAVIVYNPHNGKLFEYSSIPMERVLNRYATYSGPMERRKPEQFFDIAAARAHSNIPVNEPNVAMAAQSASLAASRRPRPTYKFEEELDL-PEAKRRKLSSGET 162
            ND  Q+ +S  P  ++  KI+I+RI DNR+RQ TFLKRKNGL KKAMELG+LCDCEI VIVYN HNGKLFEYSS+ M++VLNRYA+YSGP ERRK E FFD++AA+ +SNIP NEPNVA AA++A+LAASRRPRP+YKFEEE +  P+   RKLS GET
Sbjct:    4 NDENQTPNSSTPVARR--KIKIQRIEDNRSRQATFLKRKNGLFKKAMELGVLCDCEIGVIVYNVHNGKLFEYSSVDMDQVLNRYASYSGPSERRKRENFFDLSAAKGYSNIPQNEPNVAQAARNAALAASRRPRPSYKFEEETNAQPQGSNRKLSYGET 160          
BLAST of Ggra7106.t1 vs. uniprot
Match: A0A2V3J2L1 (Myocyte-specific enhancer factor 2D n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J2L1_9FLOR)

HSP 1 Score: 139 bits (350), Expect = 1.910e-32
Identity = 68/118 (57.63%), Postives = 88/118 (74.58%), Query Frame = 0
Query:   30 VDNRTRQ-VTFLKRKNGLLKKAMELGILCDCEIAVIVYNPHNGKLFEYSSIPMERVLNRYATYSGPMERRKPEQFFDIAAARAHSNIPVNEPNVAMAAQSASLAASRRPRPTYKFEEE 146
            + NR +Q VTF KRK+GLLKKA ELG+LCDCEI VI++NP +G LFEY S+ ME +L RYA+Y GP  R + E F D +AA+  SNIPV EP +A  A++A++AAS RPRP  KF+ +
Sbjct:   29 IQNRNKQRVTFSKRKDGLLKKAYELGVLCDCEIGVIIFNPLSGNLFEYCSVQMENLLQRYASYKGPSMRMEKETFCDRSAAKGVSNIPVEEPELAQKARNAAIAASHRPRPILKFQRQ 146          
BLAST of Ggra7106.t1 vs. uniprot
Match: A0A1X6PC13 (MADS-box domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PC13_PORUM)

HSP 1 Score: 119 bits (299), Expect = 1.760e-24
Identity = 65/116 (56.03%), Postives = 80/116 (68.97%), Query Frame = 0
Query:   21 RGKIQIRRIVDNRTRQVTFLKRKNGLLKKAMELGILCDCEIAVIVYNPHNGKLFEYSSIPMERVLNRYATYSGPMERRKPEQFFDIAAARAHSNIPVNEPNVAMAAQSASLAASRR 136
            R KI IR I D R RQVTF KRKNGLLKKAMEL +LC C+I+V+V+N    KLFEY +  M++V  RYA YSGP ERR  + F + AAA+   N+P N   +  AA +A +AASRR
Sbjct:   59 RKKILIRHIPDERNRQVTFTKRKNGLLKKAMELSVLCGCDISVVVFNG-KSKLFEYCNTDMDKVFLRYANYSGPAERRNLKNFHNPAAAKVAINVPKNHAALRDAALAAGVAASRR 173          
BLAST of Ggra7106.t1 vs. uniprot
Match: A0A6T6BQ46 (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A6T6BQ46_9RHOD)

HSP 1 Score: 115 bits (287), Expect = 1.570e-23
Identity = 60/109 (55.05%), Postives = 78/109 (71.56%), Query Frame = 0
Query:   21 RGKIQIRRIVDNRTRQVTFLKRKNGLLKKAMELGILCDCEIAVIVYNPHNGKLFEYSSIPMERVLNRYATYSGPMERRKPEQFFDIAAARAHSNIPVNEPNVAMAAQSA 129
            R KI+I RI D R RQVTF KRKNGLLKKAMEL +LCDC+I V+++N  +GKL+EY+S  +  +L RYATYSGP+E R+ E F      ++H N+P + P +A A Q A
Sbjct:    9 RKKIKIARIEDERNRQVTFTKRKNGLLKKAMELAVLCDCDIGVVIFNS-SGKLYEYTSGDLAGLLARYATYSGPVEHRETEMFHR-PTVQSHVNVPKDRPALAEAVQCA 115          
BLAST of Ggra7106.t1 vs. uniprot
Match: myocyte-specific enhancer factor 2A-like n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=UPI00077D44FC (myocyte-specific enhancer factor 2A-like n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=UPI00077D44FC)

HSP 1 Score: 104 bits (260), Expect = 7.980e-22
Identity = 71/195 (36.41%), Postives = 96/195 (49.23%), Query Frame = 0
Query:   21 RGKIQIRRIVDNRTRQVTFLKRKNGLLKKAMELGILCDCEIAVIVYNPHNGKLFEYSSIPMERVLNRYATYSGPMERRKPEQFFDIAAARAHSNIPVNEPNVAMAAQSASLAASRRPRPTYK-FEEELDLPEAKRRKLSSGETPTFAVPT-------NGMQIPHIVNNHVSTPAQHMTSRVNTSHSLNAPSPIHT 207
            R KIQI+RI D R RQVTF KRK GL+KKA EL +LCDCEIA+I++N H+ KLF+Y+S  M++VL +Y  Y+ P E R      +    + H +    +P           + + R    YK  +EE D      R  S+   PTF++P        N        NN       H   R    HS  +P P+ T
Sbjct:    3 RKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFN-HSNKLFQYASTDMDKVLLKYTEYNEPHESRTNADIIEALNKKEHRDSESPDPE-------EPFSLTPRTEEKYKKIDEEFDKMMQNYRLSSTVPQPTFSMPVTVPVSNQNAAAALQFSNNPSGATGHHHLLR--HLHSHRSPPPVAT 187          
BLAST of Ggra7106.t1 vs. uniprot
Match: A0A6P6R266 (myocyte-specific enhancer factor 2D-like isoform X1 n=1 Tax=Carassius auratus TaxID=7957 RepID=A0A6P6R266_CARAU)

HSP 1 Score: 103 bits (258), Expect = 1.660e-21
Identity = 61/149 (40.94%), Postives = 84/149 (56.38%), Query Frame = 0
Query:   21 RGKIQIRRIVDNRTRQVTFLKRKNGLLKKAMELGILCDCEIAVIVYNPHNGKLFEYSSIPMERVLNRYATYSGPMERRKPEQFFDIAAARAHSNIPVNEPNVAMAAQSASLAASRRPRPTYK-FEEELDLPEAKRRKLSSGETPTFAVP 168
            R KIQI+RI D R RQVTF KRK GL+KKA EL +LCDCEIA+I++N H+ KLF+Y+S  M++VL +Y  Y+ P E R      +    + H +    +P           + + R    YK  +EE D      R  S+   PTF++P
Sbjct:    3 RKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFN-HSNKLFQYASTDMDKVLLKYTEYNEPHESRTNADIIEALNKKEHRDSESPDPE-------EPFSLTPRTEEKYKKIDEEFDKMMQSYRLSSTVPPPTFSMP 143          
BLAST of Ggra7106.t1 vs. uniprot
Match: A0A671RLP5 (Myocyte-specific enhancer factor 2D-like n=4 Tax=Clupeocephala TaxID=186625 RepID=A0A671RLP5_9TELE)

HSP 1 Score: 100 bits (250), Expect = 1.870e-21
Identity = 61/141 (43.26%), Postives = 82/141 (58.16%), Query Frame = 0
Query:   21 RGKIQIRRIVDNRTRQVTFLKRKNGLLKKAMELGILCDCEIAVIVYNPHNGKLFEYSSIPMERVLNRYATYSGPMERRKPEQFFDIAAARAHSNIPVNEPNVAMAAQSASLAASRRPRPTYKFEEELDLPEAKRRKLSSGE 161
            R KIQI+RI D R RQVTF KRK GL+KKA EL +LCDCEIA+I++N H+ KLF+Y+S  M++VL +Y  Y+ P E R      +    +  +     EP+        S+  S      Y+  EELD+   KR  +S GE
Sbjct:    3 RKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFN-HSNKLFQYASTDMDKVLLKYTEYNEPHESRTNADIIETLRKKGFNGCNSPEPD-----GDDSIDQSPLQEDKYRNSEELDI-LFKRYGVSVGE 136          
BLAST of Ggra7106.t1 vs. uniprot
Match: myocyte-specific enhancer factor 2D homolog n=1 Tax=Nestor notabilis TaxID=176057 RepID=UPI0005239FBF (myocyte-specific enhancer factor 2D homolog n=1 Tax=Nestor notabilis TaxID=176057 RepID=UPI0005239FBF)

HSP 1 Score: 100 bits (250), Expect = 2.750e-21
Identity = 61/148 (41.22%), Postives = 85/148 (57.43%), Query Frame = 0
Query:   21 RGKIQIRRIVDNRTRQVTFLKRKNGLLKKAMELGILCDCEIAVIVYNPHNGKLFEYSSIPMERVLNRYATYSGPMERRKPEQFFDIAAARAHSNIPVNEPNVAMAAQSASLAASRRPRPTYKFEEELDLPEAKRRKLSSGETPTFAVP 168
            R KIQI+RI D R RQVTF KRK GL+KKA EL +LCDCEIA+I++N H+ KLF+Y+S  M++VL +Y  Y+ P E R      +    +  +     EP+   +   + L   +      K  E+LD+    +R  SS   P FA+P
Sbjct:    3 RKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFN-HSNKLFQYASTDMDKVLLKYTEYNEPHESRTNADIIETLRKKGFNGCDSPEPDGDDSIDQSPLMEDK----YRKGSEDLDI--LFKRYGSSVPAPNFAMP 143          
BLAST of Ggra7106.t1 vs. uniprot
Match: A0A8C5CN99 (Myocyte-specific enhancer factor 2D homolog n=1 Tax=Gadus morhua TaxID=8049 RepID=A0A8C5CN99_GADMO)

HSP 1 Score: 99.0 bits (245), Expect = 3.180e-21
Identity = 48/95 (50.53%), Postives = 66/95 (69.47%), Query Frame = 0
Query:   21 RGKIQIRRIVDNRTRQVTFLKRKNGLLKKAMELGILCDCEIAVIVYNPHNGKLFEYSSIPMERVLNRYATYSGPMERRKPEQFFDIAAARAHSNI 115
            R KIQI+RI D R +QVTF KRK GL+KKA EL +LCDCEIA+I++N H+ KLF+Y+S  M++VL +Y  Y+ P E R      +++ A    +I
Sbjct:    3 RKKIQIQRITDERNKQVTFTKRKFGLMKKAYELSVLCDCEIALIIFN-HSNKLFQYASTDMDKVLLKYTEYNEPHESRTNADIIEVSPAHCDQSI 96          
The following BLAST results are available for this feature:
BLAST of Ggra7106.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ITB93.690e-7435.53Myocyte-specific enhancer factor 2D-like n=1 Tax=G... [more]
A0A2V3J9R81.450e-5768.55Myocyte-specific enhancer factor 2D n=1 Tax=Gracil... [more]
A0A2V3J2L11.910e-3257.63Myocyte-specific enhancer factor 2D n=1 Tax=Gracil... [more]
A0A1X6PC131.760e-2456.03MADS-box domain-containing protein n=1 Tax=Porphyr... [more]
A0A6T6BQ461.570e-2355.05Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
myocyte-specific enhancer factor 2A-like n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=UPI00077D44FC7.980e-2236.41myocyte-specific enhancer factor 2A-like n=1 Tax=N... [more]
A0A6P6R2661.660e-2140.94myocyte-specific enhancer factor 2D-like isoform X... [more]
A0A671RLP51.870e-2143.26Myocyte-specific enhancer factor 2D-like n=4 Tax=C... [more]
myocyte-specific enhancer factor 2D homolog n=1 Tax=Nestor notabilis TaxID=176057 RepID=UPI0005239FBF2.750e-2141.22myocyte-specific enhancer factor 2D homolog n=1 Ta... [more]
A0A8C5CN993.180e-2150.53Myocyte-specific enhancer factor 2D homolog n=1 Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002100Transcription factor, MADS-boxPRINTSPR00404MADSDOMAINcoord: 21..41
score: 56.92
coord: 41..56
score: 68.95
coord: 56..77
score: 31.41
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 19..79
e-value: 2.3E-25
score: 100.3
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 28..76
e-value: 3.3E-21
score: 74.6
IPR002100Transcription factor, MADS-boxPROSITEPS50066MADS_BOX_2coord: 19..80
score: 22.889734
IPR036879Transcription factor, MADS-box superfamilyGENE3D3.40.1810.10coord: 31..112
e-value: 1.6E-25
score: 91.0
IPR036879Transcription factor, MADS-box superfamilySUPERFAMILY55455SRF-likecoord: 21..94
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 428..452
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 577..609
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 350..461
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 376..397
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 592..609
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..18
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
NoneNo IPR availablePANTHERPTHR48019SERUM RESPONSE FACTOR HOMOLOGcoord: 21..98
NoneNo IPR availablePANTHERPTHR48019:SF90MYOCYTE-SPECIFIC ENHANCER FACTOR 2Ccoord: 21..98
IPR033896MADS MEF2-likeCDDcd00265MADS_MEF2_likecoord: 21..93
e-value: 3.65146E-33
score: 119.579

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000062_piloncontigtig00000062_pilon:540645..542777 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7106.t1Ggra7106.t1Gracilaria gracilis GNS1m malemRNAtig00000062_pilon 540645..542777 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7106.t1 ID=Ggra7106.t1|Name=Ggra7106.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=610bp
MNSGNDPVQSTSSRPPAPQKRGKIQIRRIVDNRTRQVTFLKRKNGLLKKA
MELGILCDCEIAVIVYNPHNGKLFEYSSIPMERVLNRYATYSGPMERRKP
EQFFDIAAARAHSNIPVNEPNVAMAAQSASLAASRRPRPTYKFEEELDLP
EAKRRKLSSGETPTFAVPTNGMQIPHIVNNHVSTPAQHMTSRVNTSHSLN
APSPIHTVPLTQIVRVPHPLPVVPTQYTTQQHGYGPDPMSSHHGPHNNYG
TVASTQQMYHTTPTIPSLPGSSDGRNQVANFVHPHPTENQVHQAARISVP
VDAYASVAPAQAYPPSSHPSYQRQMPEIPPETIPPPETSIQLSQQVPYLE
AEARVDDQHNPVADGNEVSHEVGQQSVEQHSHRYLKKERDEPAESVEVSV
SKTDNMDVPHTEALAEHLQMKQAEKPSIGSHGSKDLKASHESPDKSRLSN
KENEGTENLPLPRIEVRQEGTHPQTSTGALNITSRASPPPIPNLSDAIGS
IPRLQIPPTPQGQPAWPSLNSLSSNDGGNSVSLTRFFNLDSSSTRRRNRN
PFALPQNEIIPLTPRFFGLDTSSTRSLFQSSNNAPFVRGPSDKTGEEVED
GVQRNNEQQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002100TF_MADSbox
IPR036879TF_MADSbox_sf
IPR033896MADS_MEF2-like