Ggra7102.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7102.t1
Unique NameGgra7102.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length745
Homology
BLAST of Ggra7102.t1 vs. uniprot
Match: A0A2V3J2B1 (General transcription factor IIF subunit 2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J2B1_9FLOR)

HSP 1 Score: 343 bits (879), Expect = 8.190e-109
Identity = 193/299 (64.55%), Postives = 212/299 (70.90%), Query Frame = 0
Query:    1 MSRRGKSKSRRRTSDTANEPDTSDLIGETDTANKDVQVYLVRMPTFLAQQFEDPRHGTIGRLRIPTSSQKKVPSPPSNSLNN--PNAPRIFLDKQPVPTKTGQIAVNEFELEIQADKPNIMIFSGSRTGEKPDMKVEGTAMYQCIARPKMSQTY------------------------------------------PKQREERKRQKEASRRHLDVPQGEWRAMLEKSIFQSFEAKPHYTAEELARSVAEPVSRIRSIMNDVCAYIKSGPFSGRYELKDELKTERQ-QAYSQSSEKHGL 254
            MS+R K++S+RR+ +  +EPDTSDLIG TD +NKDVQVYLVRMPTFLAQQF++P+HG IGRLRIPTS Q      P NS      N P+IFLDKQP PTK GQIAV  +ELEIQ DKPNIMIFSGSRT E PDMK+EGTAMYQCIARP+M   Y                                           KQ+EERKRQKEASRRHLDVPQGEWRAMLEKSIFQSFE KPHYTAEELAR++ EPV RIR IMNDVCAYIKSGPFSGRYELKDELKTE+Q Q   Q  E H L
Sbjct:    1 MSKRSKNRSKRRSGNVPSEPDTSDLIGNTDLSNKDVQVYLVRMPTFLAQQFQNPQHGVIGRLRIPTSQQGN----PHNSAPGVASNVPQIFLDKQPEPTKNGQIAVKAYELEIQTDKPNIMIFSGSRTREDPDMKIEGTAMYQCIARPRMDGRYRSVTKARSEFANTHTKQLLRMDDKSRKAAEREALRPQTMMETAKQKEERKRQKEASRRHLDVPQGEWRAMLEKSIFQSFEMKPHYTAEELARAIGEPVLRIRPIMNDVCAYIKSGPFSGRYELKDELKTEKQRQQKRQMLEDHRL 295          
BLAST of Ggra7102.t1 vs. uniprot
Match: A0A2V3J3A1 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3A1_9FLOR)

HSP 1 Score: 342 bits (876), Expect = 3.020e-105
Identity = 187/393 (47.58%), Postives = 262/393 (66.67%), Query Frame = 0
Query:  353 ESSNTRFELDEEKQRRNLMMKITALLRRHHDLAITRESLQNLDLKAGDKYHEALRRRNGLSQSWENAHRARLRVERDLNFFQTHSVLQDETLRQLESQTKDANSFIEKLKKKYTNMLKDKAQLAENFREHGLEHWVENSVKGTMNPIVLDAIMQGTGYVVEPVLDGIEKLATINNEVASVVSRGLKRQTSLTNYPFYSGFVSYTVFLCPLVIALSLLTRIRKGISRLSRTNWIILGTFYFFMITGGCLVAMMLGSVDVLQTFRLQNAHVFNSVLVMHGFTYFFYVMLHIYNVIQVRGQGAVSHFLVVTTIGVHFLVRSQRQSLRAEGLEVDVWTYIVYTAVLSFVLYETVFKRESASCSFPKGKARETSRETVH--QFRPPSASNISAVHASG 743
            E+ +  + L+E  +R+ L+ K+ +LL+RH +L    ES  +  +K  + + E+L RRN LSQ+ E A RARL VERD+ +F+ H+VLQ+E+L  L+SQ   A   + KL ++Y   LKD+  L E FREHGLEHWVE+S++ ++NP+VLDAIMQGT YVVEP+L+GIEKLAT+N+E+A  VS+ LK + S+   PFYSGFVSYTV LCPLVI +S+LTRIR+  S+LS  + IIL + Y+ ++T GCL+A+++GSVDVLQTFR  + H+FN +LV H   Y   V+LH++  +  R      HFL++  IG  F+  ++RQ+L  + L VD W Y+VYTAVL FVL+E V   + A     KG  R  S   +H    R P A  +   H +G
Sbjct:  157 EAESVEYALEEGPRRQVLVSKVVSLLQRHRELGRLLESKNDAIMKISNAFAESLHRRNALSQATETARRARLLVERDIEYFKGHAVLQEESLNHLKSQVSKAKVLMNKLVERYNRGLKDEEHLKERFREHGLEHWVESSMRQSLNPVVLDAIMQGTEYVVEPMLEGIEKLATVNDEIADTVSQRLKNRISMAQKPFYSGFVSYTVLLCPLVILMSVLTRIRRSFSQLSSMHLIILMSLYYTLLTLGCLLALLIGSVDVLQTFRSNHLHLFNFLLVFHSSVYILLVVLHLFRSVMFRSIDGFGHFLILAAIGGQFINDAERQTLANQSLRVDPWVYLVYTAVLCFVLFELVSTHKGAPSPKVKGD-RRASVAAIHADSNREPWAHVLRLTHIAG 548          
BLAST of Ggra7102.t1 vs. uniprot
Match: R7QPA8 (TFIIF_beta domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QPA8_CHOCR)

HSP 1 Score: 108 bits (271), Expect = 3.900e-23
Identity = 62/184 (33.70%), Postives = 100/184 (54.35%), Query Frame = 0
Query:  104 VNEFELEIQADKPNIMIFSGSRTGEKPDMKVEGTAMYQCIARPKMSQTYP------------------------------------------KQREERKRQKEASRRHLDVPQGEWRAMLEKSIFQSFEAKPHYTAEELARSVAEPVSRIRSIMNDVCAYIKSGPFSGRYELKDELKT--ERQQ 243
            V E+++E + ++  +++FS +R GE  DM++EG   +  IARPKM   Y                                           K RE+RK++KE +RRHLDVP  E++  +  ++F++F  + HY  +EL++  A  + ++R I+++VCAY KSGP+ G+Y+LKDE KT  +RQQ
Sbjct:    7 VTEYDIEFKEEETKVIVFSQNRIGENADMRMEGKVSHHGIARPKMDAKYRNVSKRRTLMSHKRNREIVLMGESERRAVQRDEIRPMSMTETLKDREKRKKKKEDARRHLDVPSAEYQKHVRLAVFKAFAIQAHYFGDELSKVTATGMQQLRPIISEVCAYNKSGPYQGQYDLKDEYKTVAQRQQ 190          
The following BLAST results are available for this feature:
BLAST of Ggra7102.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3J2B18.190e-10964.55General transcription factor IIF subunit 2 n=1 Tax... [more]
A0A2V3J3A13.020e-10547.58Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QPA83.900e-2333.70TFIIF_beta domain-containing protein n=1 Tax=Chond... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 444..478
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 340..364
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 294..329
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 265..364
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 147..168
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 151..168
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..84
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..84
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 625..645
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..547
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 669..683
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 573..583
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 652..668
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 646..651
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 704..744
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 606..624
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 584..605
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 548..572
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 684..703
NoneNo IPR availableTMHMMTMhelixcoord: 651..669
NoneNo IPR availableTMHMMTMhelixcoord: 583..605
NoneNo IPR availableTMHMMTMhelixcoord: 684..703
NoneNo IPR availableTMHMMTMhelixcoord: 548..570
NoneNo IPR availableTMHMMTMhelixcoord: 625..644
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 176..239
e-value: 1.7E-12
score: 49.2
IPR040450TFIIF beta subunit, HTH domainPFAMPF02270TFIIF_betacoord: 180..238
e-value: 3.9E-8
score: 33.3
IPR003196Transcription initiation factor IIF, beta subunitPANTHERPTHR10445GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2coord: 180..242
coord: 11..170
IPR011039Transcription Factor IIF, Rap30/Rap74, interactionSUPERFAMILY50916Rap30/74 interaction domainscoord: 29..146
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 181..238

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000062_piloncontigtig00000062_pilon:530192..533779 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7102.t1Ggra7102.t1Gracilaria gracilis GNS1m malemRNAtig00000062_pilon 530192..533779 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7102.t1 ID=Ggra7102.t1|Name=Ggra7102.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=745bp
MSRRGKSKSRRRTSDTANEPDTSDLIGETDTANKDVQVYLVRMPTFLAQQ
FEDPRHGTIGRLRIPTSSQKKVPSPPSNSLNNPNAPRIFLDKQPVPTKTG
QIAVNEFELEIQADKPNIMIFSGSRTGEKPDMKVEGTAMYQCIARPKMSQ
TYPKQREERKRQKEASRRHLDVPQGEWRAMLEKSIFQSFEAKPHYTAEEL
ARSVAEPVSRIRSIMNDVCAYIKSGPFSGRYELKDELKTERQQAYSQSSE
KHGLLATSLRSQSRGLRIIPGRQGAEKGTVEQKSVVNHIKLRSSKRLPHP
EGRGPLSKNGKEPSEETDGDGKLKSGGAEEVGIKNRVQTHQVNNERDAND
HKESSNTRFELDEEKQRRNLMMKITALLRRHHDLAITRESLQNLDLKAGD
KYHEALRRRNGLSQSWENAHRARLRVERDLNFFQTHSVLQDETLRQLESQ
TKDANSFIEKLKKKYTNMLKDKAQLAENFREHGLEHWVENSVKGTMNPIV
LDAIMQGTGYVVEPVLDGIEKLATINNEVASVVSRGLKRQTSLTNYPFYS
GFVSYTVFLCPLVIALSLLTRIRKGISRLSRTNWIILGTFYFFMITGGCL
VAMMLGSVDVLQTFRLQNAHVFNSVLVMHGFTYFFYVMLHIYNVIQVRGQ
GAVSHFLVVTTIGVHFLVRSQRQSLRAEGLEVDVWTYIVYTAVLSFVLYE
TVFKRESASCSFPKGKARETSRETVHQFRPPSASNISAVHASGD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036388WH-like_DNA-bd_sf
IPR040450TFIIF_beta_HTH
IPR003196TFIIF_beta
IPR011039TFIIF_interaction
IPR036390WH_DNA-bd_sf