Ggra7100.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7100.t1
Unique NameGgra7100.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length178
Homology
BLAST of Ggra7100.t1 vs. uniprot
Match: A0A2V3J2F5 (Protein CURVATURE THYLAKOID 1A, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J2F5_9FLOR)

HSP 1 Score: 195 bits (495), Expect = 1.290e-60
Identity = 96/147 (65.31%), Postives = 121/147 (82.31%), Query Frame = 0
Query:   31 SKAVRRRRHVFMSDDAPPEKKTADPPLDFFAPEGDSSGGRAAATAQAILDDLATRPEYYLNVFGVVFGIILSIVVLSATVIALESLPFVPDALRMIGLVYLFWFLKKYLFSATERKRLGDEVDEFVAGIRGPVVNNIRSEQLTETES 177
            S  VRR   V MS++ PP K  ++  L+++  E    G +A+ATAQA+LDDLA RPEYYLNVFGV+FG++LS +VLSAT+ ALE+LP +PD LR+IGLVYLFWFLKKYLFS  ERKRLG+++DEFVAG+RGPVVNNIR+EQLT+TE+
Sbjct:   35 SNVVRRPCIVGMSEEQPPNKGQSELSLEYYTKELSGVGEKASATAQALLDDLAARPEYYLNVFGVLFGLVLSAIVLSATMFALEALPIIPDVLRIIGLVYLFWFLKKYLFSGNERKRLGNDIDEFVAGVRGPVVNNIRTEQLTDTET 181          
BLAST of Ggra7100.t1 vs. uniprot
Match: A0A7S1ES73 (Hypothetical protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ES73_9RHOD)

HSP 1 Score: 56.6 bits (135), Expect = 1.870e-7
Identity = 24/66 (36.36%), Postives = 42/66 (63.64%), Query Frame = 0
Query:   76 QAILDDLATRPEYYLNVFGVVFGIILSIVVLSATVIALESLPFVPDALRMIGLVYLFWFLKKYLFS 141
            +A  DD+A RP++YLN+ G+  G+ +  ++L+  +  + +LP +PD L ++G+ Y  WF  KY  S
Sbjct:   31 EAFFDDIADRPQFYLNLVGISGGVYMLSLLLNVVLDVVNNLPVLPDLLTLVGMGYTVWFASKYTTS 96          
BLAST of Ggra7100.t1 vs. uniprot
Match: A0A6I9RD20 (protein CURVATURE THYLAKOID 1C, chloroplastic n=1 Tax=Elaeis guineensis var. tenera TaxID=51953 RepID=A0A6I9RD20_ELAGV)

HSP 1 Score: 54.3 bits (129), Expect = 3.530e-6
Identity = 27/98 (27.55%), Postives = 55/98 (56.12%), Query Frame = 0
Query:   64 GDSSGGRAAATAQAILDDLATRPEYYLNVFGVVFGIILSIVVLSATVIALESLPFVPDALRMIGLVYLFWFLKKYLFSATERKRLGDEVDEFVAGIRG 161
            GDSS   + +  + +  +     E  + + G+ F  I++I   S+ ++A++ LPF+P AL +IG+++ +WF+ +YL    +R+ L   +   ++ I G
Sbjct:   47 GDSSDSSSQSIVKYV-QNAWNNSEDRIGLVGLSFAAIVAIWASSSFIVAIDKLPFIPSALEVIGILFSWWFIYRYLLFKPDREELSRNIKNSISNILG 143          
The following BLAST results are available for this feature:
BLAST of Ggra7100.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3J2F51.290e-6065.31Protein CURVATURE THYLAKOID 1A, chloroplastic n=1 ... [more]
A0A7S1ES731.870e-736.36Hypothetical protein (Fragment) n=1 Tax=Timspurcki... [more]
A0A6I9RD203.530e-627.55protein CURVATURE THYLAKOID 1C, chloroplastic n=1 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025564Cyanobacterial aminoacyl-tRNA synthetase, CAAD domainPFAMPF14159CAADcoord: 84..161
e-value: 1.4E-16
score: 60.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..39
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 88..112
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 136..177
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..87
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 113..117
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 118..135
NoneNo IPR availableTMHMMTMhelixcoord: 90..112
NoneNo IPR availableTMHMMTMhelixcoord: 122..140

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000062_piloncontigtig00000062_pilon:528046..528579 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7100.t1Ggra7100.t1Gracilaria gracilis GNS1m malemRNAtig00000062_pilon 528046..528579 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7100.t1 ID=Ggra7100.t1|Name=Ggra7100.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=178bp
MDTIAFLQPCSSSFLLGAQPRSLSQSQPPLSKAVRRRRHVFMSDDAPPEK
KTADPPLDFFAPEGDSSGGRAAATAQAILDDLATRPEYYLNVFGVVFGII
LSIVVLSATVIALESLPFVPDALRMIGLVYLFWFLKKYLFSATERKRLGD
EVDEFVAGIRGPVVNNIRSEQLTETES*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025564CAAD_dom