Ggra7078.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7078.t1
Unique NameGgra7078.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length201
Homology
BLAST of Ggra7078.t1 vs. uniprot
Match: A0A2V3J363 (ER membrane protein complex subunit 4 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J363_9FLOR)

HSP 1 Score: 268 bits (684), Expect = 1.110e-88
Identity = 133/193 (68.91%), Postives = 154/193 (79.79%), Query Frame = 0
Query:    8 IRRWNLDFTKQINVSIGAQPSRPSSARTAIEQNRHPPGFPPNLSARDPNAFKTVKLSDRNIEATSSTMRLAYSTSWQIANQPIRTLVTSAFALFMAGSSVQFFSVASTLTVLFMHIRTVLGAFEAFAPVRKQLTLSQLAPQIIWRVALSTFGIAVGIWKAEQLGFLPTSESDWVALLPLRRVEESLIYRDVEI 200
            + RW LDFTKQINVS+ AQPSRPSSAR AIE+N+HPPGFPP LSA  P++FK  + SDR+   T     + Y+TSWQIAN P+R LVTSAFALFMAGSSVQFFSVASTLTVLFMHIR++LG +EAF+PVR+QL   QLAP ++WR ALS  GIA G+WKA QLGFLPTSESDW+ALLP R V  S I + V I
Sbjct:    9 LHRWGLDFTKQINVSLDAQPSRPSSARKAIEENQHPPGFPPTLSASHPSSFKVSEASDRHTGNTQGAKNVTYATSWQIANHPLRALVTSAFALFMAGSSVQFFSVASTLTVLFMHIRSILGTYEAFSPVRRQLMFRQLAPLVLWRAALSAIGIAAGLWKANQLGFLPTSESDWIALLPPRAVIRSAIRQHVVI 201          
BLAST of Ggra7078.t1 vs. uniprot
Match: R7QN79 (ER membrane protein complex subunit 4 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QN79_CHOCR)

HSP 1 Score: 164 bits (416), Expect = 7.060e-48
Identity = 95/201 (47.26%), Postives = 131/201 (65.17%), Query Frame = 0
Query:    2 TKASEQIRRWNLDFTKQ-INVSIGAQPSRPSSARTAIEQNRHPPGFPPNLSARDPNAFKTV----KLSDRNIEATSST--MRLAYSTSWQIANQPIRTLVTSAFALFMAGSSVQFFSVASTLTVLFMHIRTVLGAFEAFAPVRKQ-LTLSQLAPQIIWRVALSTFGIAVGIWKAEQLGFLPTSESDWVALLPLRRVEESLI 194
            + A +   RW+L++T +  NV+   QPSR S+ R AI +   PPGFP  +SAR+    + V    K S  N + + S   +  AYS SW IA  P R+LVTSAFALFM+ +SVQFFSVA+T+TVLFMHI+ +    EAF  V K  +    LAPQ++  + L + G+AVG++KA  LGFLPT++SDWV+LLPLR +E+  +
Sbjct:    5 SSACDTKHRWSLNYTDESTNVAAPTQPSRASAVRAAIGKYETPPGFPSEVSARNLFMLRKVTASSKASGSNGKESPSKPDLNAAYSASWSIAFSPARSLVTSAFALFMSSTSVQFFSVATTITVLFMHIQAIFATGEAFKQVAKSGIPTKMLAPQVLVHLLLISAGVAVGLYKAHLLGFLPTTQSDWVSLLPLRIIEDGYL 205          
BLAST of Ggra7078.t1 vs. uniprot
Match: A0A3S3MFE6 (ER membrane protein complex subunit 4 n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3MFE6_9MAGN)

HSP 1 Score: 89.7 bits (221), Expect = 4.730e-19
Identity = 61/185 (32.97%), Postives = 95/185 (51.35%), Query Frame = 0
Query:    1 MTKASEQIRRWNLDFTKQINVSIGAQPSRPSSARTAIEQNRHPPGFPPNLSARDPNAFKTVKLSDRNIEATSSTMRLAYSTSWQIANQPIRTLVTSAFALFMAGSSVQFFSVASTLTVLFMHIRTVLGAFEAFAPVRKQLTLSQLAPQIIWRVALSTFGIAVGIWKAEQLGFLPTSESDWVALLP 185
            M K    +R+W +DFT+    S        SS+R       +P GF      +D +   TV    +  EAT  T + A    W++A  P + L+   F ++MAGS+V  FS+  T + L+  I  + G  + F P  K   +  +AP++++ +AL+  G+A+G+WK   LG LPT  SDWV+ LP
Sbjct:    1 MEKGKAYVRKWAIDFTENQTAS--------SSSRDIP----NPLGFDRASQDQDDS---TVTRQKKEAEATWKTQKKA----WEVAQAPFKNLLMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPY-KDSRVDIVAPKLLF-IALNLAGLALGVWKLNTLGLLPTHPSDWVSSLP 164          
BLAST of Ggra7078.t1 vs. uniprot
Match: A0A6A4LPB9 (ER membrane protein complex subunit 4 (Fragment) n=6 Tax=Pentapetalae TaxID=1437201 RepID=A0A6A4LPB9_9ERIC)

HSP 1 Score: 89.0 bits (219), Expect = 8.090e-19
Identity = 60/182 (32.97%), Postives = 97/182 (53.30%), Query Frame = 0
Query:    9 RRWNLDFTKQINVSIGAQPSRPSSARTAIEQNRHPPGFPPNLSARDPNAFKTVKLSDRNIEATSSTMRLAYSTSWQIANQPIRTLVTSAFALFMAGSSVQFFSVASTLTVLFMHIRTVLGAFEAFAPVRKQLTLSQLAPQIIWRVALSTFGIAVGIWKAEQLGFLPTSESDWVALLPLRRVE 190
            R+W +DFT           S  SS+R   +    PPGF    + +D +   TV    ++ EA   + + A    W++A  P + L+   F ++MAGS+V  FS+  T + L+  +  + G  + FAP  K   +  LAP++++ +AL+  G+A+G+WK   LG LPT  SDWV+ LP  +V+
Sbjct:    3 RKWAVDFTDN---------STASSSRDIPD----PPGFFRTSADQDDS---TVSRQKKDAEANWKSQQKA----WEVAQAPFKNLLMMGFMMWMAGSTVHLFSIGITFSALWQPLSALQGVGKVFAPY-KDSKVDLLAPKLLF-IALNLGGLALGVWKLNTLGLLPTHASDWVSSLPPAQVQ 162          
BLAST of Ggra7078.t1 vs. uniprot
Match: A0A6P5T1Z6 (ER membrane protein complex subunit 4 n=7 Tax=Amygdaloideae TaxID=171637 RepID=A0A6P5T1Z6_PRUAV)

HSP 1 Score: 86.3 bits (212), Expect = 1.050e-17
Identity = 55/178 (30.90%), Postives = 90/178 (50.56%), Query Frame = 0
Query:    9 RRWNLDFT-KQINVSIGAQPSRPSSARTAIEQNRHPPGFPPNLSARDPNAFKTVKLSDRNIEATSSTMRLAYSTSWQIANQPIRTLVTSAFALFMAGSSVQFFSVASTLTVLFMHIRTVLGAFEAFAPVRKQLTLSQLAPQIIWRVALSTFGIAVGIWKAEQLGFLPTSESDWVALLP 185
            RRW +D T    + S    P  P  +RT++EQ+                   TV    ++ E+T    +     +W++A  P + L+   F ++MAGS+V  FS+  T + L+  I  + G  + F P  K   +  +AP++++ +AL+  G+A+G+WK   LG LPT  SDWV+ LP
Sbjct:   12 RRWAVDLTDNSTSPSSRDVPDPPGFSRTSLEQDD-----------------STVSRQKKDAESTWKAQK-----AWEVAQAPFKNLLMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPY-KDSKVDLIAPKLLF-IALNLGGLALGVWKLNTLGLLPTHASDWVSSLP 165          
BLAST of Ggra7078.t1 vs. uniprot
Match: A0A4S4EZ62 (ER membrane protein complex subunit 4 n=1 Tax=Camellia sinensis var. sinensis TaxID=542762 RepID=A0A4S4EZ62_CAMSI)

HSP 1 Score: 86.7 bits (213), Expect = 2.520e-17
Identity = 57/189 (30.16%), Postives = 95/189 (50.26%), Query Frame = 0
Query:    9 RRWNLDFTKQINVSIGAQ-PSRPSSARTAIEQNRHPPGFPPNLSARDPNAFKTVKLSDRNIEATSSTMRLAYSTSWQIANQPIRTLVTSAFALFMAGSSVQFFSVASTLTVLFMHIRTVLGAFEAFAPVRKQLTLSQLAPQIIWRVALSTFGIAVGIWKAEQLGFLPTSESDWVALL-PLRRVEESLIY 195
            RRW +DFT    V      P  P  +R  ++Q+                   T+    ++ EA   + +     +W++A  P + L+   F ++MAGS+V  FS+  T + L+  I  + G  + FAP  K   +  LAP++++ +AL+  G+A+G+WK   LG LPT  SDWV+ L P + + E+ I+
Sbjct:   11 RRWAIDFTDNSTVPSSRDIPDPPGFSRAPLDQDD-----------------STLSRQKKDAEANWKSQK-----AWEMAQAPFKNLLMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFAPY-KDSKVDLLAPKLLF-IALNLGGLALGVWKLNSLGLLPTHASDWVSSLSPAQGMPETCIF 175          
BLAST of Ggra7078.t1 vs. uniprot
Match: A0A1U8A9F3 (ER membrane protein complex subunit 4 n=2 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U8A9F3_NELNU)

HSP 1 Score: 84.7 bits (208), Expect = 3.900e-17
Identity = 56/178 (31.46%), Postives = 89/178 (50.00%), Query Frame = 0
Query:    9 RRWNLDFT-KQINVSIGAQPSRPSSARTAIEQNRHPPGFPPNLSARDPNAFKTVKLSDRNIEATSSTMRLAYSTSWQIANQPIRTLVTSAFALFMAGSSVQFFSVASTLTVLFMHIRTVLGAFEAFAPVRKQLTLSQLAPQIIWRVALSTFGIAVGIWKAEQLGFLPTSESDWVALLP 185
            RRW +DFT   I+ S    P     AR + +Q+                   TV    ++ EA     +     +W++A  P++ L+   F ++MAGS+V  FS+  T + L+  I  + G  + F P  K   +  LAP++++ +AL+  G+A+G+WK   LG LPT  SDWV+ LP
Sbjct:   10 RRWAIDFTDNSISPSSRDIPDPLGYARASSDQDD-----------------STVSRQKKDAEANWKAQK-----AWEVAQSPLKNLLMMGFMMWMAGSAVHLFSIGITFSALWQPINALQGVGKIFEPY-KDSKVDILAPKLLF-IALNLVGLALGVWKLNTLGLLPTHASDWVSSLP 163          
BLAST of Ggra7078.t1 vs. uniprot
Match: A0A4U5QKB9 (ER membrane protein complex subunit 4 n=7 Tax=Saliceae TaxID=238069 RepID=A0A4U5QKB9_POPAL)

HSP 1 Score: 84.7 bits (208), Expect = 4.080e-17
Identity = 62/185 (33.51%), Postives = 95/185 (51.35%), Query Frame = 0
Query:    9 RRWNLDFTKQINVSIGAQPSRPSSARTAIEQNRHPPGFPPNLSARDPNAFKTVKLSDRNIEATSSTMRLAYSTSWQIANQPIRTLVTSAFALFMAGSSVQFFSVASTLTVLFMHIRTVLGAFEAFAPVRKQLTLSQLAPQIIWRVALSTFGIAVGIWKAEQLGFLPTSESDWVALLP-LRRVEES 192
            RRW +DFT           S   S+R   +    PPGF      +D +A    K   ++ EA   + +     +W++A  P + L+   F ++MAG++V  FS+  T + L+  I  + G  + F P  K   +  LAP++I+ +AL+  G+A+GIWK   LG LPT  SDWV+ LP  + VE S
Sbjct:   12 RRWAVDFTDN---------STTPSSRDIPD----PPGFNRASQEQDDSAVTKQK---KDAEANWKSQK-----AWEVAQAPFKNLLMMGFMMWMAGNTVHLFSIGITFSALWQPIGALQGVGKVFEPY-KDSKVDLLAPKLIF-IALNLGGLALGIWKLNTLGLLPTHVSDWVSSLPPAKEVEYS 173          
BLAST of Ggra7078.t1 vs. uniprot
Match: A0A6A1UWU3 (ER membrane protein complex subunit 4 n=1 Tax=Morella rubra TaxID=262757 RepID=A0A6A1UWU3_9ROSI)

HSP 1 Score: 84.7 bits (208), Expect = 6.990e-17
Identity = 59/177 (33.33%), Postives = 91/177 (51.41%), Query Frame = 0
Query:    9 RRWNLDFTKQINVSIGAQPSRPSSARTAIEQNRHPPGFPPNLSARDPNAFKTVKLSDRNIEATSSTMRLAYSTSWQIANQPIRTLVTSAFALFMAGSSVQFFSVASTLTVLFMHIRTVLGAFEAFAPVRKQLTLSQLAPQIIWRVALSTFGIAVGIWKAEQLGFLPTSESDWVALLP 185
            RRW +DFT     SI      PSS   A      PPGF      +D +     K   ++ E+   + +     +W++A  P + L+   F ++MAGS+V  FS+  T + L+  I  + G  + F P  K   +  LAP++++ +AL+  G+A+G+WK   LG LPT  SDWV+ LP
Sbjct:   12 RRWAVDFTDN---SIS-----PSSRDIA-----DPPGFSRASQDQDDSTLSRQK---KDAESNWKSQK-----AWEVAQAPFKNLLMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPY-KDSKVDLLAPKLVF-IALNLGGLALGVWKLNTLGLLPTHASDWVSSLP 165          
BLAST of Ggra7078.t1 vs. uniprot
Match: A0A438F3B1 (ER membrane protein complex subunit 4 n=4 Tax=Pentapetalae TaxID=1437201 RepID=A0A438F3B1_VITVI)

HSP 1 Score: 84.0 bits (206), Expect = 7.160e-17
Identity = 55/187 (29.41%), Postives = 92/187 (49.20%), Query Frame = 0
Query:    9 RRWNLDFTKQINVSIGAQ-PSRPSSARTAIEQNRHPPGFPPNLSARDPNAFKTVKLSDRNIEATSSTMRLAYSTSWQIANQPIRTLVTSAFALFMAGSSVQFFSVASTLTVLFMHIRTVLGAFEAFAPVRKQLTLSQLAPQIIWRVALSTFGIAVGIWKAEQLGFLPTSESDWVALLPLRRVEESLI 194
            RRW +D T           P  P  +R +++Q+             D    +  K ++ N +A  +         W++A  P + L+   F ++MAGS+V  FS+  T + L+  I  + G  + F P  K   +  L P++++ +AL+  G+A+G+WK   LG LPT  SDWV+ LP  +V+ SL+
Sbjct:   11 RRWAVDLTDYSTTPSSRDIPDPPGFSRASLDQD-------------DSTLSRQKKDAEANWKAQKA---------WEVAQTPFKNLLMMGFMMWMAGSTVHLFSIGITFSALWQPISALQGVGKVFEPY-KDSKVDLLGPKLLF-IALNLGGLALGVWKLNTLGLLPTHASDWVSSLPPAQVQFSLL 173          
The following BLAST results are available for this feature:
BLAST of Ggra7078.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J3631.110e-8868.91ER membrane protein complex subunit 4 n=1 Tax=Grac... [more]
R7QN797.060e-4847.26ER membrane protein complex subunit 4 n=1 Tax=Chon... [more]
A0A3S3MFE64.730e-1932.97ER membrane protein complex subunit 4 n=1 Tax=Cinn... [more]
A0A6A4LPB98.090e-1932.97ER membrane protein complex subunit 4 (Fragment) n... [more]
A0A6P5T1Z61.050e-1730.90ER membrane protein complex subunit 4 n=7 Tax=Amyg... [more]
A0A4S4EZ622.520e-1730.16ER membrane protein complex subunit 4 n=1 Tax=Came... [more]
A0A1U8A9F33.900e-1731.46ER membrane protein complex subunit 4 n=2 Tax=Nelu... [more]
A0A4U5QKB94.080e-1733.51ER membrane protein complex subunit 4 n=7 Tax=Sali... [more]
A0A6A1UWU36.990e-1733.33ER membrane protein complex subunit 4 n=1 Tax=More... [more]
A0A438F3B17.160e-1729.41ER membrane protein complex subunit 4 n=4 Tax=Pent... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009445TMEM85/ER membrane protein complex subunit 4PFAMPF06417DUF1077coord: 74..183
e-value: 3.3E-23
score: 81.9
IPR009445TMEM85/ER membrane protein complex subunit 4PANTHERPTHR19315ER MEMBRANE PROTEIN COMPLEX SUBUNIT 4coord: 31..191
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..38
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..47
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 138..148
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..92
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 168..200
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 119..137
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 93..113
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 114..118
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 149..167
NoneNo IPR availableTMHMMTMhelixcoord: 98..120

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000062_piloncontigtig00000062_pilon:372092..372694 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7078.t1Ggra7078.t1Gracilaria gracilis GNS1m malemRNAtig00000062_pilon 372092..372694 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7078.t1 ID=Ggra7078.t1|Name=Ggra7078.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=201bp
MTKASEQIRRWNLDFTKQINVSIGAQPSRPSSARTAIEQNRHPPGFPPNL
SARDPNAFKTVKLSDRNIEATSSTMRLAYSTSWQIANQPIRTLVTSAFAL
FMAGSSVQFFSVASTLTVLFMHIRTVLGAFEAFAPVRKQLTLSQLAPQII
WRVALSTFGIAVGIWKAEQLGFLPTSESDWVALLPLRRVEESLIYRDVEI
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009445TMEM85/Emc4