Ggra7070.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7070.t1
Unique NameGgra7070.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length190
Homology
BLAST of Ggra7070.t1 vs. uniprot
Match: A0A2V3J2D0 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J2D0_9FLOR)

HSP 1 Score: 235 bits (599), Expect = 4.720e-76
Identity = 122/179 (68.16%), Postives = 152/179 (84.92%), Query Frame = 0
Query:    8 AFLPQPVIVPVGSRSTRPTICMRRKDSPKKKKPTAISRLSKEEKSNIDRIAEQYGVTPPKPGDQLDRKYTQKEPEEKKTLYQSAAAAIGVPALNTLEQGLYVLLGSLLTFLLTTGLVISSEAFFKASGKPIPESLDSFATLVQDFFSPALLTFLVLSSLLGIFKQSQLESGASSYSSLK 186
            AF+P  V+    S++ R  +CM+++ +PKKKKP AISRLSKEEK+ ID+IAE+YGV PPKPGDQLDRKYT+ +PEE KT+YQS A A+GV  LN +EQGLYV LG LLTFL+T GL+ISSEAF+KA+GK IPESLD+F ++VQ +F+PAL+ FLVLSS+LGI+KQSQLESGASSYSSL+
Sbjct:    8 AFVPARVLPTTRSKTLRSCLCMKKRGAPKKKKPNAISRLSKEEKARIDKIAERYGVQPPKPGDQLDRKYTKVKPEEPKTMYQSLAGAVGVETLNLVEQGLYVALGGLLTFLITCGLLISSEAFYKATGKDIPESLDAFTSMVQGYFTPALVIFLVLSSVLGIYKQSQLESGASSYSSLR 186          
BLAST of Ggra7070.t1 vs. uniprot
Match: R7QM47 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QM47_CHOCR)

HSP 1 Score: 138 bits (348), Expect = 5.450e-38
Identity = 89/191 (46.60%), Postives = 122/191 (63.87%), Query Frame = 0
Query:    8 AFLPQPVIVPVGSRST-RPTICMR---RKDSPKKKKPTAISRLSKEEKSNIDRIAEQYGVTPPKPGDQLDRKY---TQKEPEEKK--TLYQSAAAAIGVPALNTLEQGLYVLLGSLLTFLLTTGLVISSEAFFKASGKPIPESLDSFATLVQDFFSPALLTFLVLSSLLGIFKQSQLESGASSYSSLKEKE 189
            AF    +++P G R T R  + MR   RK  PKK      S+LSKE +  I+ +A +YG+  P+PGD LDRK+   +  +PE +   + YQ  A A GV ALN  E+ L V LG++L   L +GL ISSEAFFKASGK IP+++++    ++  F+P LL FL LSS+ G++KQSQL SGASSYS+L + E
Sbjct:    8 AFCGPALLLPTGQRRTARVCVTMRKGKRKPGPKK------SQLSKESEERIEGLASKYGIRAPRPGDDLDRKFNSTSSSDPENQPPPSAYQRLAGAFGVEALNAAERVLVVALGTMLIAFLASGLAISSEAFFKASGKEIPDNVEAVLLSLEQAFTPTLLIFLALSSVFGLYKQSQLSSGASSYSALSKDE 192          
BLAST of Ggra7070.t1 vs. uniprot
Match: A0A7S0ZH70 (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZH70_9RHOD)

HSP 1 Score: 73.9 bits (180), Expect = 1.220e-12
Identity = 46/145 (31.72%), Postives = 85/145 (58.62%), Query Frame = 0
Query:   38 KKPTAISRLSKEEKSNIDRIAEQYGVTPPK---PGDQLDRKYTQKEPEE--KKTLYQSAAAAIGVPALNTLEQGLYVLLGSLLTFLLTTGLVISSEAFFKASGKPIPESLDSFATLVQDFFSPALLTFLVLSSLLGIFKQSQLES 177
            KK TA  R  KE+  ++D++  +YGV  P       ++D+K  ++  EE  K++ Y+     +G   L  +E  +   L  L+   +++G+ IS+EA+FK+  KP+P+++D     ++   +P+++ FL+LSS+ G++K  QLES
Sbjct:   97 KKLTAEER--KEKNKDLDKVLARYGVELPSNVTQAQRMDKKLREERAEEETKRSPYEFIVDTLGFETLARIESVIQAALFGLMFVWISSGVAISTEAYFKSQKKPVPDNIDKIVQQLEAVLTPSVVMFLILSSVYGLYKLVQLES 239          
BLAST of Ggra7070.t1 vs. uniprot
Match: A0A7S0BJL2 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BJL2_9RHOD)

HSP 1 Score: 55.5 bits (132), Expect = 4.740e-6
Identity = 32/104 (30.77%), Postives = 56/104 (53.85%), Query Frame = 0
Query:   74 RKYTQKEPEEKKTLYQSAAAAIGVPALNTLEQGLYVLLGSLLTFLLTTGLVISSEAFFKASGKPIPESLDSFATL-VQDFFSPALLTFLVLSSLLGIFKQSQLE 176
            R+   +  + K + Y    + +G+  +  L++ L       L     TG++I +EAFFKA+G+ +P++LD F    V   F+P+LL F   S  LG+ K +Q++
Sbjct:  101 RRADAEREKNKVSTYSKIVSKLGIDGVGKLDKALSTACTICLLVFFITGILIGAEAFFKATGRDVPQNLDQFLVEGVNYVFTPSLLIFFACSINLGLLKSAQID 204          
The following BLAST results are available for this feature:
BLAST of Ggra7070.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3J2D04.720e-7668.16Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QM475.450e-3846.60Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S0ZH701.220e-1231.72Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A7S0BJL24.740e-630.77Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..80
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..56
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 171..189
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 152..170
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 11..22
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 107..131
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..10
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..106
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 132..151

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000062_piloncontigtig00000062_pilon:306194..306763 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7070.t1Ggra7070.t1Gracilaria gracilis GNS1m malemRNAtig00000062_pilon 306194..306763 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7070.t1 ID=Ggra7070.t1|Name=Ggra7070.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=190bp
MAFALLPAFLPQPVIVPVGSRSTRPTICMRRKDSPKKKKPTAISRLSKEE
KSNIDRIAEQYGVTPPKPGDQLDRKYTQKEPEEKKTLYQSAAAAIGVPAL
NTLEQGLYVLLGSLLTFLLTTGLVISSEAFFKASGKPIPESLDSFATLVQ
DFFSPALLTFLVLSSLLGIFKQSQLESGASSYSSLKEKE*
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