Ggra7069.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7069.t1
Unique NameGgra7069.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length767
Homology
BLAST of Ggra7069.t1 vs. uniprot
Match: A0A2V3J2B4 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J2B4_9FLOR)

HSP 1 Score: 650 bits (1676), Expect = 6.150e-222
Identity = 350/730 (47.95%), Postives = 488/730 (66.85%), Query Frame = 0
Query:    1 MATSILKRSHSGKRVKPKQT----RRYNSKHPKTNEDEALMSLRVHECRFLPLRLQGVTAVATSPSGRYIILARSDYSVELKDRVAFWTTTSVIPADSKKRKQFYTAIEFSNCGSYVFASRAHGVIEVFKITENGLVHHVSLSPGGGKIFDLAVCRDSSTVGFRLAIACADGRVRVMAPDPSFFSMDEEQELPTNTAFYETLLSEKTRASVTCVAWYN-AATEPEECIVAGDGNGGVRWINPSTGSCYGAGKIPALRLDRVVMNTIQFSRGGRQVLCGDSRGLITVWSSASNSISDEFRIDGSHGAILSSAV------CGHREWGNSEVIVFGSEGGELAALRSIPDSELWSISRARRLHVHQVRSIAALPNGTCVSSSVDSFLTVFTPQALAGKEPITFLWPHSRCVGQADVQILPHKRVALSNTSEVIEIWSFPRNSPSPTLALRMNLDRLSPVISCTFSTRSGLLALSTIDSFKLFKVSTSDTTDFEPAQKVNL--LEVSSQLSSCLRGAIDMVYCGDNLVCLSKCRQKVYFYDGARVHLLNLVPPDMKLGMFFLKLSGHSKKLMVSDSRGNVVVCIFDDTTEKRPSYQ-CRLLRRPVAGSEDIHVSALSFSPSGTKAAIAYTDMSLCVLDLGEESSRESTFGG--NQYTRITNCFSSTASSLSFARTEDSLLTTGSSFTKVIPLSKVAESKGNQSLSSEFSLFDREIRPGESMSCSSVIGPTEVIV 714
            MATS   +S + KR++ +Q     +R  ++H ++    A + L+VHECRF     +GV++++ SPSGR+I++AR+D S+ELKD  A WTT S+   +   ++   T +EFS C SYVFASRA+G I++ K+T++GLVH VSLSPGGG+I DL+VCRD S  GF +A AC DGRVR++ PDPSFF++ ++++LPTN AFY+TL SEK  A VTC++W   +A+  ++CIVAGD +GGVRW+NP+ GSCYGAGKIP+LR  +VVM TIQF+RGGRQV CGDSRG +T+WSS +N+ISDE  +DG +G++LSS +          +   SEVIVFGSEGGE+A LRS+PDSE WS SR  R+H  +V+SI++L  G+ VSSS+DSFL  F  +AL  ++ I ++WPH  CVGQ  VQ+L    + L      IE WSF R SPSP LALRMNL +LS V +C++ST++   A++T++SF LFKV+T ++ D  P    +L  L+V + +S  L+G IDM++CG+ LVC+ +CR++++ Y    V  ++   P+   G +F KL+G  + LMVSDSRGNV+VC   D   +  S     L        +   VSA+SFSPSG+K A+AYTD+ L V D     S E    G  N    I +  +S  +S+SF+RTE S+L TGSSF+KVI L K ++        SEF L++      ES   S+++GP EVI+
Sbjct:    1 MATSTSVQSQAKKRMRSQQDAHTMKRKRARHVESGS-VAPIPLKVHECRFFQSGSRGVSSMSVSPSGRFIVIARTDQSIELKDSRAMWTTISIFFPEPTLKQAPITTVEFSTCNSYVFASRANGTIQILKVTDDGLVHQVSLSPGGGRIHDLSVCRDPSIEGFCIAAACQDGRVRIIRPDPSFFALKDDRDLPTNPAFYDTLASEKAMAPVTCLSWAPYSASGTDDCIVAGDADGGVRWMNPTNGSCYGAGKIPSLRGKKVVMKTIQFARGGRQVFCGDSRGFVTIWSSRTNTISDEIHVDGLNGSVLSSTISKLPNTAEGEKLAGSEVIVFGSEGGEIATLRSVPDSEFWSASRVVRVHSDKVQSISSLGKGSIVSSSMDSFLATFNCKALFEQDRIDWMWPHVGCVGQPSVQLLQSSGMVLLKRHHSIEAWSFSRASPSPVLALRMNLHKLSDVRACSYSTKTETFAVATVNSFHLFKVTTQNSDDTGPQSFRDLRELKVPAGVSMRLKGCIDMLFCGEALVCIGRCRKQIFLYHQDEVQDISPSIPEGTRGTYFCKLAGAERNLMVSDSRGNVLVCSVSDQNPRTFSLSDWNLFSSESRKGQRTLVSAMSFSPSGSKIAVAYTDLGLRVFDFSRLKSSEQKCDGSLNSCASINSSLASVTNSISFSRTERSVLVTGSSFSKVISLPKSSDVTYKHLKESEFHLYEHGTTRKESFVASAILGPAEVIM 729          
The following BLAST results are available for this feature:
BLAST of Ggra7069.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J2B46.150e-22247.95Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 47..334
e-value: 1.7E-20
score: 75.2
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 338..691
e-value: 1.4E-8
score: 36.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 9..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 6..32
NoneNo IPR availablePANTHERPTHR44163U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 4 HOMOLOGcoord: 40..678
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 52..377
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 345..664

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000062_piloncontigtig00000062_pilon:302677..305295 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7069.t1Ggra7069.t1Gracilaria gracilis GNS1m malemRNAtig00000062_pilon 302677..305295 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7069.t1 ID=Ggra7069.t1|Name=Ggra7069.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=767bp
MATSILKRSHSGKRVKPKQTRRYNSKHPKTNEDEALMSLRVHECRFLPLR
LQGVTAVATSPSGRYIILARSDYSVELKDRVAFWTTTSVIPADSKKRKQF
YTAIEFSNCGSYVFASRAHGVIEVFKITENGLVHHVSLSPGGGKIFDLAV
CRDSSTVGFRLAIACADGRVRVMAPDPSFFSMDEEQELPTNTAFYETLLS
EKTRASVTCVAWYNAATEPEECIVAGDGNGGVRWINPSTGSCYGAGKIPA
LRLDRVVMNTIQFSRGGRQVLCGDSRGLITVWSSASNSISDEFRIDGSHG
AILSSAVCGHREWGNSEVIVFGSEGGELAALRSIPDSELWSISRARRLHV
HQVRSIAALPNGTCVSSSVDSFLTVFTPQALAGKEPITFLWPHSRCVGQA
DVQILPHKRVALSNTSEVIEIWSFPRNSPSPTLALRMNLDRLSPVISCTF
STRSGLLALSTIDSFKLFKVSTSDTTDFEPAQKVNLLEVSSQLSSCLRGA
IDMVYCGDNLVCLSKCRQKVYFYDGARVHLLNLVPPDMKLGMFFLKLSGH
SKKLMVSDSRGNVVVCIFDDTTEKRPSYQCRLLRRPVAGSEDIHVSALSF
SPSGTKAAIAYTDMSLCVLDLGEESSRESTFGGNQYTRITNCFSSTASSL
SFARTEDSLLTTGSSFTKVIPLSKVAESKGNQSLSSEFSLFDREIRPGES
MSCSSVIGPTEVIVCLRVRWTDVHGNEYNESYQFRNDVVLTLGLQHRHAN
SVSGAPRRLSHLNLWK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR036322WD40_repeat_dom_sf