Ggra7050.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7050.t1
Unique NameGgra7050.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length288
Homology
BLAST of Ggra7050.t1 vs. uniprot
Match: A0A250KZA9 (Rhs-family protein n=2 Tax=Methylocaldum marinum TaxID=1432792 RepID=A0A250KZA9_9GAMM)

HSP 1 Score: 75.9 bits (185), Expect = 4.880e-12
Identity = 42/96 (43.75%), Postives = 56/96 (58.33%), Query Frame = 0
Query:   60 GSVEYSGFDSRRRVQGASAVINEDTVNIGSKPEQSIHPSGWEEIGVKGKARHRCHLIGAQLGGSGADARNLFTCHRH-ANSPVMRHYENRIRKLVD 154
            G+++Y   D+  R  G SA I  D +  G+K   +I P G+    V      R HL+GAQLGGSG D RNL T  +  ANSPVMR +EN++R  V+
Sbjct:  219 GAIKYGNLDTLNRPTGVSATITPDMIGTGTKANPTILPPGY----VTDSGMARGHLLGAQLGGSGDDVRNLVTIQQTPANSPVMRGFENQVRAAVE 310          
BLAST of Ggra7050.t1 vs. uniprot
Match: DNA/RNA non-specific endonuclease n=1 Tax=Streptomyces huasconensis TaxID=1854574 RepID=UPI001E4B264C (DNA/RNA non-specific endonuclease n=1 Tax=Streptomyces huasconensis TaxID=1854574 RepID=UPI001E4B264C)

HSP 1 Score: 73.9 bits (180), Expect = 5.020e-12
Identity = 41/97 (42.27%), Postives = 55/97 (56.70%), Query Frame = 0
Query:   59 GGSVEYSGFDSRRRVQGASAVINEDTVNIGSKPEQSIHPSGWEEIGVKGKARHRCHLIGAQLGGSGADARNLFTCHRHANSPVMRHYENRIRKLVDS 155
            GG V+Y       R  G  A +  D     +KP + I   G+E+     K  H+ HL+GAQ+GGS  D RN  T HR+AN+PVM+H E +IR+ VDS
Sbjct:   70 GGRVQYGAPGPGGRATGMQARLESDMTGGRTKPPKWI--PGYEKY----KELHKTHLLGAQIGGSNKDLRNFVTMHRNANTPVMKHVEEQIRRAVDS 160          
BLAST of Ggra7050.t1 vs. uniprot
Match: DUF6531 domain-containing protein n=1 Tax=Streptomyces huasconensis TaxID=1854574 RepID=UPI001E5779C0 (DUF6531 domain-containing protein n=1 Tax=Streptomyces huasconensis TaxID=1854574 RepID=UPI001E5779C0)

HSP 1 Score: 73.9 bits (180), Expect = 4.960e-11
Identity = 41/97 (42.27%), Postives = 55/97 (56.70%), Query Frame = 0
Query:   59 GGSVEYSGFDSRRRVQGASAVINEDTVNIGSKPEQSIHPSGWEEIGVKGKARHRCHLIGAQLGGSGADARNLFTCHRHANSPVMRHYENRIRKLVDS 155
            GG V+Y       R  G  A +  D     +KP + I   G+E+     K  H+ HL+GAQ+GGS  D RN  T HR+AN+PVM+H E +IR+ VDS
Sbjct: 1392 GGRVQYGAPGPGGRATGMQARLESDMTGGRTKPPKWI--PGYEKY----KELHKTHLLGAQIGGSNKDLRNFVTMHRNANTPVMKHVEEQIRRAVDS 1482          
BLAST of Ggra7050.t1 vs. uniprot
Match: DNA/RNA non-specific endonuclease n=1 Tax=Streptomyces sp. ISL-100 TaxID=2819173 RepID=UPI001BE6B9B6 (DNA/RNA non-specific endonuclease n=1 Tax=Streptomyces sp. ISL-100 TaxID=2819173 RepID=UPI001BE6B9B6)

HSP 1 Score: 73.9 bits (180), Expect = 4.980e-11
Identity = 40/97 (41.24%), Postives = 52/97 (53.61%), Query Frame = 0
Query:   59 GGSVEYSGFDSRRRVQGASAVINEDTVNIGSKPEQSIHPSGWEEIGVKGKARHRCHLIGAQLGGSGADARNLFTCHRHANSPVMRHYENRIRKLVDS 155
            GG V Y   D   R     A +  D +   +  +    P GW+    K K  +R HL+GAQLGGS  D  N  T H +ANSPVMRH EN++RK V++
Sbjct: 1435 GGRVRYGELDEHGRPTAMHATLGPDMM-AANPTDPHGDPPGWQ----KDKGYNRAHLLGAQLGGSNYDPANFVTMHAYANSPVMRHIENQVRKAVEA 1526          
BLAST of Ggra7050.t1 vs. uniprot
Match: DNA/RNA non-specific endonuclease n=1 Tax=Propionibacterium acidifaciens TaxID=556499 RepID=UPI001F310F53 (DNA/RNA non-specific endonuclease n=1 Tax=Propionibacterium acidifaciens TaxID=556499 RepID=UPI001F310F53)

HSP 1 Score: 72.4 bits (176), Expect = 1.170e-10
Identity = 43/97 (44.33%), Postives = 58/97 (59.79%), Query Frame = 0
Query:   60 GSVEYSGFDSRRRVQGASAVINEDTVNIGSKPEQSIHPSGWEEIGVKGKARHRCHLIGAQLGGSGADARNLFTCHRH-ANSPVMRHYENRIRKLVDS 155
            GSV     D   R  G +A +  D V  GSK   S+ P G+E  G  G+AR   HL+GAQLGG G + RN+ T  ++  N+PVMR YEN++RK +D+
Sbjct:  381 GSVNMGELDDLERPTGVTAHLTPDMVGTGSKVPPSLKPPGFEG-GSAGQARG--HLLGAQLGGDGTNPRNVVTLTQNPTNTPVMRGYENQVRKALDA 474          
BLAST of Ggra7050.t1 vs. uniprot
Match: U2R181 (Pretoxin HINT domain protein n=2 Tax=Propionibacterium acidifaciens TaxID=556499 RepID=U2R181_9ACTN)

HSP 1 Score: 72.4 bits (176), Expect = 1.680e-10
Identity = 43/97 (44.33%), Postives = 58/97 (59.79%), Query Frame = 0
Query:   60 GSVEYSGFDSRRRVQGASAVINEDTVNIGSKPEQSIHPSGWEEIGVKGKARHRCHLIGAQLGGSGADARNLFTCHRH-ANSPVMRHYENRIRKLVDS 155
            GSV     D   R  G +A +  D V  GSK   S+ P G+E  G  G+AR   HL+GAQLGG G + RN+ T  ++  N+PVMR YEN++RK +D+
Sbjct: 1918 GSVNMGELDDLERPTGVTAHLTPDMVGTGSKVPPSLKPPGFEG-GSAGQARG--HLLGAQLGGDGTNPRNVVTLTQNPTNTPVMRGYENQVRKALDA 2011          
BLAST of Ggra7050.t1 vs. uniprot
Match: DNA/RNA non-specific endonuclease n=1 Tax=Streptomyces albidochromogenes TaxID=329524 RepID=UPI00110FB81E (DNA/RNA non-specific endonuclease n=1 Tax=Streptomyces albidochromogenes TaxID=329524 RepID=UPI00110FB81E)

HSP 1 Score: 69.3 bits (168), Expect = 1.340e-9
Identity = 39/95 (41.05%), Postives = 53/95 (55.79%), Query Frame = 0
Query:   62 VEYSGFDSRRRVQGASAVINEDTVNIGSKP-EQSIHPSGWEEIGVKGKARHRCHLIGAQLGGSGADARNLFTCHRHANSPVMRHYENRIRKLVDS 155
            V Y   D   R     A + +D +  G+ P +   +P GW     K +  +R HL+GAQLGGS  D  N  T H +ANSPVMRH EN++RK V++
Sbjct:  449 VLYGQLDEHGRPTAMHATLGKDMM--GANPTDPHGNPPGW----AKDQGYNRAHLLGAQLGGSNFDPANFVTMHAYANSPVMRHIENQVRKAVEA 537          
BLAST of Ggra7050.t1 vs. uniprot
Match: A0A4R4S7J9 (Endonuclea_NS_2 domain-containing protein n=2 Tax=Actinomadura sp. GC306 TaxID=2530367 RepID=A0A4R4S7J9_9ACTN)

HSP 1 Score: 66.6 bits (161), Expect = 4.040e-9
Identity = 41/98 (41.84%), Postives = 56/98 (57.14%), Query Frame = 0
Query:   63 EYSGFDSRRRVQGASA-VINEDTVNIGSKPEQSIHPSGW--EEIGVKGKARH---RCHLIGAQLGGSGADARNLFTCHRHANSPVMRHYENRIRKLVD 154
            EY   DS+ R  GA A   +   +  GS   +SI PSGW  +  G    ++    R HLIGAQLGGSG+D RNL T ++  N+  M+ YEN +R+ V+
Sbjct:  118 EYRPLDSQGRATGARAQYCSAGDLAGGSPARKSILPSGWPRDAAGKPNNSKRVFSRGHLIGAQLGGSGSDPRNLITIYQRMNNSSMKKYENIVRRAVE 215          
BLAST of Ggra7050.t1 vs. uniprot
Match: A0A1V6GF84 (Calx-beta domain protein n=1 Tax=Verrucomicrobia bacterium ADurb.Bin063 TaxID=1852926 RepID=A0A1V6GF84_9BACT)

HSP 1 Score: 67.8 bits (164), Expect = 6.040e-9
Identity = 41/87 (47.13%), Postives = 55/87 (63.22%), Query Frame = 0
Query:   64 YSGFDSRRRVQGASAVINEDTVNIGSKPEQSIHPSGWEEIGVKGKARHRCHLIGAQLGGSGADARNLFTCHRH-ANSPVMRHYENRI 149
            Y   D   R  GA A I++  +  G++  QSI P G++  G  G+AR   HL+GAQLGGSG +ARNL T  ++ ANSPVMR +EN +
Sbjct: 3589 YGSLDDFGRPTGAYATIDQSVLGTGTRANQSILPPGFQG-GAVGQARG--HLLGAQLGGSGDEARNLVTLLQNPANSPVMRGFENAV 3672          
BLAST of Ggra7050.t1 vs. uniprot
Match: A0A536GUE3 (Endonuclea_NS_2 domain-containing protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A536GUE3_9CHLR)

HSP 1 Score: 59.7 bits (143), Expect = 1.640e-6
Identity = 37/101 (36.63%), Postives = 53/101 (52.48%), Query Frame = 0
Query:   61 SVEYSGFDSRRRVQGASAVINEDTVNIGSKPEQSIHPSGWEEIGVKGKARHRCHLIGAQLGGSGADARNLFTCHRH-ANSPVMRHYENRIRKLVDSFRSGD 160
            S+     DS  R  G  A +  + V  G+   + I P G+E    +     R HL+GAQ+GGSG D +NL T H+  AN P M  YE R+RK +++ +  D
Sbjct:  265 SIHSGPLDSLHRPTGVQAQLTGEHVLTGTPASRHITPPGFEG---QPAGHARGHLLGAQIGGSGTDPKNLVTIHQTPANLPEMVSYERRVRKALEAGQQVD 362          
The following BLAST results are available for this feature:
BLAST of Ggra7050.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A250KZA94.880e-1243.75Rhs-family protein n=2 Tax=Methylocaldum marinum T... [more]
DNA/RNA non-specific endonuclease n=1 Tax=Streptomyces huasconensis TaxID=1854574 RepID=UPI001E4B264C5.020e-1242.27DNA/RNA non-specific endonuclease n=1 Tax=Streptom... [more]
DUF6531 domain-containing protein n=1 Tax=Streptomyces huasconensis TaxID=1854574 RepID=UPI001E5779C04.960e-1142.27DUF6531 domain-containing protein n=1 Tax=Streptom... [more]
DNA/RNA non-specific endonuclease n=1 Tax=Streptomyces sp. ISL-100 TaxID=2819173 RepID=UPI001BE6B9B64.980e-1141.24DNA/RNA non-specific endonuclease n=1 Tax=Streptom... [more]
DNA/RNA non-specific endonuclease n=1 Tax=Propionibacterium acidifaciens TaxID=556499 RepID=UPI001F310F531.170e-1044.33DNA/RNA non-specific endonuclease n=1 Tax=Propioni... [more]
U2R1811.680e-1044.33Pretoxin HINT domain protein n=2 Tax=Propionibacte... [more]
DNA/RNA non-specific endonuclease n=1 Tax=Streptomyces albidochromogenes TaxID=329524 RepID=UPI00110FB81E1.340e-941.05DNA/RNA non-specific endonuclease n=1 Tax=Streptom... [more]
A0A4R4S7J94.040e-941.84Endonuclea_NS_2 domain-containing protein n=2 Tax=... [more]
A0A1V6GF846.040e-947.13Calx-beta domain protein n=1 Tax=Verrucomicrobia b... [more]
A0A536GUE31.640e-636.63Endonuclea_NS_2 domain-containing protein n=1 Tax=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR044929DNA/RNA non-specific endonuclease superfamilyGENE3D3.40.570.10Extracellular Endonuclease, subunit Acoord: 37..160
e-value: 3.5E-25
score: 90.5
IPR044927Type VII secretion system protein EssD-likePFAMPF13930Endonuclea_NS_2coord: 63..151
e-value: 4.0E-14
score: 53.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 166..204
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 160..204
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..23
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..287
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availableTMHMMTMhelixcoord: 7..24

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000062_piloncontigtig00000062_pilon:241702..242565 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7050.t1Ggra7050.t1Gracilaria gracilis GNS1m malemRNAtig00000062_pilon 241702..242565 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7050.t1 ID=Ggra7050.t1|Name=Ggra7050.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=288bp
MKFETQFWILLALLVLTTHFTSATCSELSQRRFGLNISIHQDGLDKQDIN
NVNLFRARGGSVEYSGFDSRRRVQGASAVINEDTVNIGSKPEQSIHPSGW
EEIGVKGKARHRCHLIGAQLGGSGADARNLFTCHRHANSPVMRHYENRIR
KLVDSFRSGDPRGCSRAVKRRRRGPQRGRRAVKRRRRGPQRSRRAVKRRR
RGPQRCRRAVKHTVNLSYHEDTPYASKIRITSQMYVNGQPKEVLQDVWVY
NKDETNPKVEFICAGSMPQEAAPSVDDDSITKATAPC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR044929DNA/RNA_non-sp_Endonuclease_sf
IPR044927Endonuclea_NS_2