Ggra7048.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7048.t1
Unique NameGgra7048.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length396
Homology
BLAST of Ggra7048.t1 vs. uniprot
Match: A0A2V3IJX2 (Uncharacterized protein n=2 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJX2_9FLOR)

HSP 1 Score: 218 bits (556), Expect = 2.040e-64
Identity = 115/299 (38.46%), Postives = 173/299 (57.86%), Query Frame = 0
Query:   85 SKYMDVHSLLRQTIKPLTEKRYCEALELFEGHINVIPRSLTDLDETLLEFIETSFEKSSSRGNRQKMCNLLCALHIIAPASRHHMGLSQIALNGWNMNNPSVSSTPWTKEFSFAIAAHKLEAGHHKAATALVLAWAGYLRAGEVLSLTRNLVALPGDPRVSSYSNRTAGVCIKDAKTGPFQFVPLTNEEVIKTLRSYLNRKDCLQLESDKLFNISYSKYLTTIRKSCAALGLDGFKITTHSARIGGALHDSVCGKSAECIAITGRWKSLSSLRYYLTDVRSWIMRLSLNAATKQNVAEY 383
            S +  +H L+ +TIKP T + YC+AL+ F   +      L  LD  +  +I  +F++      +Q+M N  CAL+I+   ++  + +S  ++ GW  ++ +  STP+T+E   A     L  G  +AA  L L+WAGYLR  E L+L    VALPGDPRV++Y    AG+ I  AKTGP QFV + +   I  L+ Y+ +   ++   D LF I YS Y   ++K  +   +   K+TTHSARIGGALHD + G  AE IA+ GRW SL+SLR+YLT  R+W+M++++       + +Y
Sbjct:   39 SSFFSMHPLIARTIKPKTLQSYCKALDNFTATLTTSCPDLHHLDHLIDSYINKTFKEDPRATRKQEMTNHPCALYIVDARTKTGLPMSHRSIKGWEKSHNAQPSTPFTQEILHAFVMKLLLDGRAEAAVCLALSWAGYLRVSEALALRAENVALPGDPRVAAYGYEVAGITILVAKTGPLQFVSIKDRNCITLLKCYMKKLSNIR---DTLFTIKYSTYAAQLKKVMSFFNVTHLKLTTHSARIGGALHDFMRGTKAEDIALKGRWNSLTSLRHYLTTGRAWLMKMNITDQQTAKIKQY 334          
BLAST of Ggra7048.t1 vs. uniprot
Match: A0A2V3J3T3 (Uncharacterized protein n=2 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3T3_9FLOR)

HSP 1 Score: 192 bits (487), Expect = 1.840e-55
Identity = 102/233 (43.78%), Postives = 140/233 (60.09%), Query Frame = 0
Query:  151 MCNLLCALHIIAPASRHHMGLSQIALNGWNMNNPSVSSTPWTKEFSFAIAAHKLEAGHHKAATALVLAWAGYLRAGEVLSLTRNLVALPGDPRVSSYSNRTAGVCIKDAKTGPFQFVPLTNEEVIKTLRSYLNRKDCLQLESDKLFNISYSKYLTTIRKSCAALGLDGFKITTHSARIGGALHDSVCGKSAECIAITGRWKSLSSLRYYLTDVRSWIMRLSLNAATKQNVAEY 383
            M NLLCAL+I+   ++  + LS  ++ GW  ++ +  STP+T+E   A     L  G  +AA  L L+WAGYLR  E L+L    VALP DPRV+SY N  AG+ I DAKTGP QFV + +   I  L  Y+ +   +Q   D LF I YS Y   ++K  +   +   K TTHSARIGGALHD + G  AE IA+ GRW SL+SLR+YLT  R+W+M++++       + +Y
Sbjct:    1 MTNLLCALYIVDARTKTGLPLSHRSIKGWEKSHNAQPSTPFTQEILHAFVMKVLLDGTAEAAVCLALSWAGYLRVSEALALRVENVALPEDPRVASYGNEVAGIAILDAKTGPLQFVSIKDRNCITLLTYYMKKLSNIQ---DTLFTIKYSTYAAQLKKVMSFFNVTHLKFTTHSARIGGALHDFMRGTKAEDIALKGRWNSLTSLRHYLTTGRAWLMKMNITDQQTAKIKQY 230          
BLAST of Ggra7048.t1 vs. uniprot
Match: A0A2V3IZL9 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZL9_9FLOR)

HSP 1 Score: 167 bits (424), Expect = 3.580e-47
Identity = 88/163 (53.99%), Postives = 113/163 (69.33%), Query Frame = 0
Query:  194 EFSFAIAAHKLEAGHHKAATALVLAWAGYLRAGEVLSLTRNLVALPGDPRVSSYSNRTAGVCIKDAKTGPFQFVPLTNEEVIKTLRSYLNRKDCLQLESDKLFNISYSKYLTTIRKSCAALGLDGFKITTHSARIGGALHDSVCGKSAECIAITGRWKSLSSL 356
            EF+F+I  + L++   +AA A V+AW+GYLRA EVL+LT  LVALPGDP +S Y + TAGVCIKD KT PFQFVP++ +E +  L +Y            K+F ++YS Y   ++ +C+ LGL  F+IT+H ARIG ALHD V GKSAE IAI GRWK LSSL
Sbjct:    2 EFNFSIVGYLLQSNQSQAAIARVVAWSGYLRASEVLNLTWALVALPGDPMLSYYPSETAGVCIKDTKTRPFQFVPISRKESVIVLAAYKRSTRPEARMQSKVFTLTYSAYHQQLQLACSILGLLDFRITSHLARIGRALHDFVAGKSAESIAIIGRWKDLSSL 164          
The following BLAST results are available for this feature:
BLAST of Ggra7048.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IJX22.040e-6438.46Uncharacterized protein n=2 Tax=Gracilariopsis cho... [more]
A0A2V3J3T31.840e-5543.78Uncharacterized protein n=2 Tax=Gracilariopsis cho... [more]
A0A2V3IZL93.580e-4753.99Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013762Integrase-like, catalytic domain superfamilyGENE3D1.10.443.10Intergrase catalytic corecoord: 196..364
e-value: 3.3E-11
score: 45.3
IPR011010DNA breaking-rejoining enzyme, catalytic coreSUPERFAMILY56349DNA breaking-rejoining enzymescoord: 210..363

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000062_piloncontigtig00000062_pilon:210034..211221 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7048.t1Ggra7048.t1Gracilaria gracilis GNS1m malemRNAtig00000062_pilon 210034..211221 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7048.t1 ID=Ggra7048.t1|Name=Ggra7048.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=396bp
MSKARELFRRMQREAARPAREAMHNRSNAIPPRRVISKSPPLTMATRKVF
SWHKTISRHPNHITHQRTQSKAPIKSFRNLMVSFSKYMDVHSLLRQTIKP
LTEKRYCEALELFEGHINVIPRSLTDLDETLLEFIETSFEKSSSRGNRQK
MCNLLCALHIIAPASRHHMGLSQIALNGWNMNNPSVSSTPWTKEFSFAIA
AHKLEAGHHKAATALVLAWAGYLRAGEVLSLTRNLVALPGDPRVSSYSNR
TAGVCIKDAKTGPFQFVPLTNEEVIKTLRSYLNRKDCLQLESDKLFNISY
SKYLTTIRKSCAALGLDGFKITTHSARIGGALHDSVCGKSAECIAITGRW
KSLSSLRYYLTDVRSWIMRLSLNAATKQNVAEYHQSFTALCQPSL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013762Integrase-like_cat_sf
IPR011010DNA_brk_join_enz