Ggra7042.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7042.t1
Unique NameGgra7042.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length340
Homology
BLAST of Ggra7042.t1 vs. uniprot
Match: A0A2V3J3D5 (BHLH domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3D5_9FLOR)

HSP 1 Score: 385 bits (989), Expect = 1.240e-130
Identity = 196/315 (62.22%), Postives = 238/315 (75.56%), Query Frame = 0
Query:   24 TDTLSIQHDSLAIARRRRDARRTRATIGGQFEQLRRVLPRAPDGGQLTAKAQILEHALRVIRDLMNRATRLAVELAVVSPQATRSWVSSVSGQGRKPMSSTVISVMKLFAARRNWRYAEWWTLDEKRSTLDEEAPLMQREDMEAKKPDGVIDHPANVHGCVVRDSTSVMRLGCTIIHRTGDDEVWTNGHNSEEDERLTKFAQASQDYEFHPRMGIPGRVWTSQRAEWLVDLANKEAFIRSELPDDFGMKTCLAVPIKFGGHVHSVMAFYCTDRRLCDAESLDLATLLVRCLEQVYSPGQVASWEMNTESEFPSSP 338
            T T   + +++ IARRRRD RRTRAT+G QFEQLR VLP   DG Q   KAQIL++ +RVIR+LMNRAT L++ELAVVSPQ TRSWVS V+ QGR P+S TV SVMKLFA  +NWRY EWWTLDEKR    ++       + E +KP+GVIDHPANVHGCVVRDS+SVMRL  TII++    E  + G +     +L  FA+AS DYEF PR+G+PGRVWTSQRAEWL++L NKEAFIRSEL   FGM+TCLAVP++FGGHVHSV+AFY T+RRLCD E L+LA+LL + +E+VYSP    +W+    S FPSSP
Sbjct:   28 TTTTPGKRNAVEIARRRRDVRRTRATLGDQFEQLRGVLPPPSDGVQYREKAQILKYTIRVIRNLMNRATHLSIELAVVSPQKTRSWVSRVAQQGRLPLSRTVASVMKLFAEHQNWRYGEWWTLDEKRHKSHDDF-TQHTTNTEFEKPEGVIDHPANVHGCVVRDSSSVMRLSYTIINKPQQSESLSAGADMAVHRKLCAFARASMDYEFRPRIGVPGRVWTSQRAEWLLELYNKEAFIRSELAKQFGMQTCLAVPVRFGGHVHSVLAFYSTERRLCDPECLELASLLAKSVEEVYSPRHGTAWDSCGGSAFPSSP 341          
BLAST of Ggra7042.t1 vs. uniprot
Match: A0A2V3IV04 (GAF domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IV04_9FLOR)

HSP 1 Score: 145 bits (365), Expect = 5.760e-36
Identity = 87/268 (32.46%), Postives = 135/268 (50.37%), Query Frame = 0
Query:   47 RATIGGQFEQLRRVLPRAPDGGQLTAKAQILEHALRVIRDLMNRATRLAVELAVVSPQATRSWVSSVSGQGRKPMSSTVISVMKLFAARRNWRYAEWWTLDEKRSTLDEEAPLMQREDMEAKKPDGVIDHPANVHGCVVRDSTSVMRLGCTIIHRTGDDEVWTNGHNSEEDERLTKFAQASQDYEFHPRMGIPGRVWTSQRAEWLVDLANKEAFIRSELPDDFGMKTCLAVPIKFGGHVHSVMAFYCTDRRLCDAESLDLATLLVRCL 314
            R  +   FE+L+R LP AP G ++  KAQ+L++A+ V++ ++ R T+L +ELAV S +AT  W+S +  +      +    VM+LF+ RR W++AE WT   K ++ + ++                             D++  +R   +I   T           +E    L  F++AS+ Y F  + G+PGRVW+S R EW+  L N + F RS L    G+K CLAVP+   G + +VM FY T  R  D + L+LA  L   L
Sbjct:  217 RDRLNSMFERLKRTLPPAPSGVEVKHKAQVLDYAILVLKGMVERTTQLEIELAVSSNKATMEWISKLVDRV-DTFPNAAEEVMQLFSRRRGWKHAELWTTSRKTASPEVDS-----------------------------DNSVTLRFCSSICSET----------TNERKLNLQTFSKASEKYAFKAQHGVPGRVWSSMRPEWVTGLDNSKNFHRSSLAKKHGLKVCLAVPVTITGKIEAVMCFYDTKHRPYDTQCLELAMNLAWAL 444          
BLAST of Ggra7042.t1 vs. uniprot
Match: R7QJ09 (BHLH domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QJ09_CHOCR)

HSP 1 Score: 120 bits (300), Expect = 8.080e-28
Identity = 82/286 (28.67%), Postives = 136/286 (47.55%), Query Frame = 0
Query:   25 DTLSIQHDSLAIARRRRDARRTRATIGGQFEQLRRVLPRAPDGGQLTAKAQILEHALRVIRDLMNRATRLAVELAVVSPQATRSWVSSVSGQGRKPMSSTVISVMKLFAARRNWRYAEWWTLDEKRSTLDEEAPLMQ---REDMEAKKPDGVIDHPANVHGCVVRDSTSVMRLGCTIIHRTGDDEVWTNGHNSEEDERLTKFAQASQDYEFHPRMGIPGRVWTSQRAEWLVDLANKEAFIRSELPDDFGMKTCLAVPIKFGGHVHSVMAFYCTDRRLCDAESLDLA 307
            D  S+  D  +        RR RA +  +F++L  +LP  P    +  KAQIL++A+RV RD+  R T L  ELA+ S     +WV  +  +    +   +   + L   +  W+Y+E W        +  + P+     R  +EA   +  +  P  +    +   T+ +RLG  +I   G      N  + +   +L +F   S+ Y+   R+ +PGRV  + R EWL  L ++EAF R+ L  +  +  C  VP+   GH+ +V  F+ TD+R  DA+ +DLA
Sbjct:   30 DVSSVLDDGQSKDTHNSHTRRCRAKVNLKFQELLSILPTPPPKTGIKHKAQILDYAIRVYRDIHARKTLLEAELALSSRSQLNAWVDGIVLRSIS-LQDALAPYLSLICTKGGWKYSEAW--------IPAQQPIPSQPVRGKVEAVSGESNVLTPTTL----LSGPTARLRLGLAVIPSLG------NTDDPDLQTKLERFRDKSRAYQCKARVDLPGRVMCTMRPEWLPSLNDQEAFQRAHLAHNANLVVCFGVPVFICGHIAAVAVFFDTDQRAYDAKCVDLA 296          
BLAST of Ggra7042.t1 vs. uniprot
Match: A0A1X6NUF4 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NUF4_PORUM)

HSP 1 Score: 82.8 bits (203), Expect = 1.180e-13
Identity = 41/100 (41.00%), Postives = 60/100 (60.00%), Query Frame = 0
Query:  220 LTKFAQASQDYEFHPRMGIPGRVWTSQRAEWLVDLAN-KEAFIRSELPDDFGMKTCLAVPIKFGGHVHSVMAFYCTDRRLCDAESLDLATLLVRCLEQVY 318
            L +F+  S+ + F P++G+PGRVW++ R EWL  LA+ +  F+R+ L   FG++ C+AVP+   G V +V+AFY T  R  D    DLA  L   L   Y
Sbjct:  879 LERFSIESRAWRFRPKVGVPGRVWSTMRPEWLASLADDRGTFLRAPLARRFGLRVCVAVPVTVSGSVAAVVAFYDTVARPFDPACYDLAVKLTCALGNAY 978          
BLAST of Ggra7042.t1 vs. uniprot
Match: A0A2H2XLS2 (Multi-sensor hybrid histidine kinase n=2 Tax=unclassified Calothrix TaxID=2619626 RepID=A0A2H2XLS2_9CYAN)

HSP 1 Score: 65.1 bits (157), Expect = 4.440e-9
Identity = 35/101 (34.65%), Postives = 56/101 (55.45%), Query Frame = 0
Query:  220 LTKFAQASQDYEFHPRMGIPGRVWTSQRAEWLVDLA--NKEAFIRSELPDDFGMKTCLAVPIKFGGHVHSVMAFY----CTDRRLCDAESLDLATLLVRCL 314
            L +F   S+ +   P +G+PGRVW+SQ+ EW++D +  ++  F+R  +   FG+KT L VPI   G V SV+ F+    C  R++ +     +   L  CL
Sbjct:   63 LQQFWFCSEAFILSPGVGLPGRVWSSQQPEWILDASAHSETYFLRHYIAKAFGIKTGLGVPILVNGQVISVLVFFQLEMCEQRQIIELVMAAVQVALKNCL 163          
BLAST of Ggra7042.t1 vs. uniprot
Match: diguanylate cyclase n=1 Tax=Microcoleus sp. FACHB-831 TaxID=2692827 RepID=UPI001683F77F (diguanylate cyclase n=1 Tax=Microcoleus sp. FACHB-831 TaxID=2692827 RepID=UPI001683F77F)

HSP 1 Score: 67.8 bits (164), Expect = 7.610e-9
Identity = 33/91 (36.26%), Postives = 53/91 (58.24%), Query Frame = 0
Query:  218 ERLTKFAQASQDYEFHPRMGIPGRVWTSQRAEWL--VDLANKEAFIRSELPDDFGMKTCLAVPIKFGGHVHSVMAFYCTDRRLCDAESLDL 306
            E L +F   S+   F P  G+PGRVW SQ+ EW+  V L   + F+RS++  + G+KT L VP+     V +V+ F+ T++R  +   ++L
Sbjct:  216 ESLQEFRYYSEKLTFTPHTGLPGRVWMSQKPEWIENVSLEQNQLFLRSDIALEAGLKTALGVPLVLDDQVLAVLVFFKTEQRKPEERLIEL 306          
BLAST of Ggra7042.t1 vs. uniprot
Match: A0A1G1HDI7 (Uncharacterized protein n=2 Tax=unclassified Nitrospirae TaxID=1298915 RepID=A0A1G1HDI7_9BACT)

HSP 1 Score: 67.4 bits (163), Expect = 1.240e-8
Identity = 48/154 (31.17%), Postives = 79/154 (51.30%), Query Frame = 0
Query:  147 DEKRSTLDEEAPLMQREDMEAKKPDGV-------IDHPANVHGCVVRDSTSVMRLGCTIIHRTGDDEVWTNGHNSEEDERLTKFAQASQDYEFHPRMGIPGRVWTSQRAEWLVDLA-NKEAFIRSELPDDFGMKTCLAVPIKFGGHVHSVMAFY 292
            +E+R   +EEA L+Q   +     D V       +     + G V  ++  V R   T++  T   + W        DE+  KF   S+ Y F P +G+PGRVW+S++ EW+ D++ N   ++RS+   + G++T LAVPI  G  V +V+ +Y
Sbjct:  202 EEERRLREEEASLLQSMIVSISDADDVTSAIEIVLQQICEITGWVYGEAW-VPRPDSTVLECT---KTWFK------DEKYEKFKAISEKYLFQPGIGLPGRVWSSKKPEWVKDVSVNGSIYLRSDGAINNGLRTGLAVPIIGGDEVLAVLVYY 345          
BLAST of Ggra7042.t1 vs. uniprot
Match: A0A0F5Y812 (Diguanylate cyclase n=1 Tax=Limnoraphis robusta CS-951 TaxID=1637645 RepID=A0A0F5Y812_9CYAN)

HSP 1 Score: 65.9 bits (159), Expect = 3.160e-8
Identity = 32/78 (41.03%), Postives = 48/78 (61.54%), Query Frame = 0
Query:  217 DERLTKFAQASQDYEFHPRMGIPGRVWTSQRAEWLVDLA--NKEAFIRSELPDDFGMKTCLAVPIKFGGHVHSVMAFY 292
            D  L +F  +S    F P  G+ GRVW+SQ+ EW+ D++  +   F+RS+L    G+KT LAVP+ FG  V +V+ F+
Sbjct:  211 DPLLQQFYHSSLKLTFAPNQGLVGRVWSSQKLEWIEDISLESPPKFVRSQLARQAGLKTALAVPMIFGDRVLAVLVFF 288          
BLAST of Ggra7042.t1 vs. uniprot
Match: A0A845ZZM2 (EAL domain-containing protein n=1 Tax=Leptolyngbya sp. SIO4C5 TaxID=2607774 RepID=A0A845ZZM2_9CYAN)

HSP 1 Score: 65.9 bits (159), Expect = 4.610e-8
Identity = 34/106 (32.08%), Postives = 58/106 (54.72%), Query Frame = 0
Query:  220 LTKFAQASQDYEFHPRMGIPGRVWTSQRAEWLVDLA--NKEAFIRSELPDDFGMKTCLAVPIKFGGHVHSVMAFYCTDRRLCDAESLDLATLLVRCLEQVYSPGQV 323
            + +F + SQ Y F   +G+PGRVW SQ+AEW+ D++  ++E F+R       G++T + VPI FG    +V+ F+  + R    + + L + +   L  +    QV
Sbjct:   75 IAQFGELSQQYRFPMGVGLPGRVWQSQQAEWMRDVSAVSEEQFLRIGPALAAGLRTGIGVPILFGSEPLAVLVFFMREARRASQQQVQLVSAIAAQLGAIMRLKQV 180          
BLAST of Ggra7042.t1 vs. uniprot
Match: A0A5B9W2X7 (Histidine kinase n=1 Tax=Aquisphaera giovannonii TaxID=406548 RepID=A0A5B9W2X7_9BACT)

HSP 1 Score: 63.9 bits (154), Expect = 1.880e-7
Identity = 36/112 (32.14%), Postives = 59/112 (52.68%), Query Frame = 0
Query:  220 LTKFAQASQDYEFHPRMGIPGRVWTSQRAEWLVDLANKEAFIRSELPDDFGMKTCLAVPIKFGGHVHSVMAFYCTDRRLCDAESLDLATLLVRCLEQVYSPGQVASWEMNTE 331
            L+ F   ++   F    G+PGRVW SQRA W+ D+A + AF R+ +    G+++  AVP+   G    V+ F+    R  D + +++AT L R + Q     Q+ S  + +E
Sbjct:  787 LSAFDGPTRAAAFARGEGLPGRVWESQRAAWIEDIAAEPAFPRASVAAAVGLRSAFAVPVSGRGDCLGVLEFFSRTPRARDDDLMEMATNLGRQIGQFIERQQIHSRMVQSE 898          
The following BLAST results are available for this feature:
BLAST of Ggra7042.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A2V3J3D51.240e-13062.22BHLH domain-containing protein n=1 Tax=Gracilariop... [more]
A0A2V3IV045.760e-3632.46GAF domain-containing protein n=1 Tax=Gracilariops... [more]
R7QJ098.080e-2828.67BHLH domain-containing protein n=1 Tax=Chondrus cr... [more]
A0A1X6NUF41.180e-1341.00Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A2H2XLS24.440e-934.65Multi-sensor hybrid histidine kinase n=2 Tax=uncla... [more]
diguanylate cyclase n=1 Tax=Microcoleus sp. FACHB-831 TaxID=2692827 RepID=UPI001683F77F7.610e-936.26diguanylate cyclase n=1 Tax=Microcoleus sp. FACHB-... [more]
A0A1G1HDI71.240e-831.17Uncharacterized protein n=2 Tax=unclassified Nitro... [more]
A0A0F5Y8123.160e-841.03Diguanylate cyclase n=1 Tax=Limnoraphis robusta CS... [more]
A0A845ZZM24.610e-832.08EAL domain-containing protein n=1 Tax=Leptolyngbya... [more]
A0A5B9W2X71.880e-732.14Histidine kinase n=1 Tax=Aquisphaera giovannonii T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainSMARTSM00353finuluscoord: 40..93
e-value: 0.0038
score: 26.5
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROSITEPS50888BHLHcoord: 34..87
score: 9.883196
IPR029016GAF-like domain superfamilyGENE3D3.30.450.40coord: 184..316
e-value: 6.0E-10
score: 41.1
IPR036638Helix-loop-helix DNA-binding domain superfamilyGENE3D4.10.280.10coord: 31..109
e-value: 2.1E-5
score: 26.4
IPR036638Helix-loop-helix DNA-binding domain superfamilySUPERFAMILY47459HLH, helix-loop-helix DNA-binding domaincoord: 44..105
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 10..27
NoneNo IPR availableCDDcd00083bHLH_SFcoord: 54..87
e-value: 1.38094E-4
score: 37.1145
NoneNo IPR availableSUPERFAMILY55781GAF domain-likecoord: 220..311

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000062_piloncontigtig00000062_pilon:145182..146201 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7042.t1Ggra7042.t1Gracilaria gracilis GNS1m malemRNAtig00000062_pilon 145182..146201 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7042.t1 ID=Ggra7042.t1|Name=Ggra7042.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=340bp
MHPHSPKSNLPSDLPVTHTSPSHTDTLSIQHDSLAIARRRRDARRTRATI
GGQFEQLRRVLPRAPDGGQLTAKAQILEHALRVIRDLMNRATRLAVELAV
VSPQATRSWVSSVSGQGRKPMSSTVISVMKLFAARRNWRYAEWWTLDEKR
STLDEEAPLMQREDMEAKKPDGVIDHPANVHGCVVRDSTSVMRLGCTIIH
RTGDDEVWTNGHNSEEDERLTKFAQASQDYEFHPRMGIPGRVWTSQRAEW
LVDLANKEAFIRSELPDDFGMKTCLAVPIKFGGHVHSVMAFYCTDRRLCD
AESLDLATLLVRCLEQVYSPGQVASWEMNTESEFPSSPL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
IPR029016GAF-like_dom_sf
IPR036638HLH_DNA-bd_sf