Ggra7033.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7033.t1
Unique NameGgra7033.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length414
Homology
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BLAST of Ggra7033.t1 vs. uniprot
Match: A0A2V3J277 (C2H2-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J277_9FLOR)

HSP 1 Score: 295 bits (754), Expect = 1.100e-93
Identity = 196/421 (46.56%), Postives = 247/421 (58.67%), Query Frame = 0 
Query:    1 MSSSPRQLRICPQCGKKFGKEPKLERHLLEVHGATLSIPPPTTPPSPSFLLVETQLESALAEANRCFQLGNPSCRLCVHKKPFKNSRDLAQHLVSKHEKQLMCAETVPLPCPPTSSEVSAKPDVRVQLRSNVPH--KRVHIEDS-LPTDQPQLKKAKVSTPGIPSAAHDLRSAPSECKKLASTSIAPIASVKPTPGADQRTNAAMKFALPTRTATAPGDALTKPALRDKGRASDNHKRVRIDDSPPTNERSQVISPLGDGKNARSNAASSIFAQNVSMKPSVHADRTETPGTGDAKDATAGSAKKLIQRSKSAPIVNHSAALSSNSSSRSGTPSSGSKPPVTPKRSKAVLAPKDSMKKASSPG---ATTGA--KASSIENKTMPIFNPLRGIIHKQTTMMDFSSVGLGSNTRKSYYTLKNS 413
            M+SSPR L  C +C KKFGK  KLERHLLE HGATLSIPPPT PPSPSFLLVETQLESALAEANR FQL +P+CRLCV K+PFKNSRDLAQHLVSKH   LMCAE +PLP  P++SEVSA P+ R ++R+   +  KR  IE S + +DQP LK+AK         A   R  P+  ++ +S +      V  +   D   N       P   +  P D   KP+       ++N       ++PP +                        +Q+   KP               K A++     +  R+KS  + NH++ALSSNSSSRSGTPSSG+KPPVTPKR+KAVL PK+SMK+A+SP    AT  A  K ++     +P  NPLR +    +  +DFS+ G G+NTRKSYYTLKNS
Sbjct:    1 MASSPRALHTCSKCAKKFGKVTKLERHLLESHGATLSIPPPTDPPSPSFLLVETQLESALAEANRRFQLADPTCRLCVVKRPFKNSRDLAQHLVSKHSDALMCAEALPLPSLPSTSEVSANPNPRDKVRATPAYSNKRTQIEQSTVESDQPPLKRAKT--------APKQRQTPTTYQQSSSANPTVPRPVSKSLPKDVPGN-------PKTASALPNDVSPKPS-------TENTTHTTTKNAPPISA-----------------------SQSKQSKP---------------KHASSPDRSPVNNRTKSNALANHASALSSNSSSRSGTPSSGTKPPVTPKRTKAVLPPKESMKRAASPNRDKATQNATAKPTAAVPTPVPFLNPLRNVSRVLSIPLDFSAAGFGANTRKSYYTLKNS 361
The following BLAST results are available for this feature:
BLAST of Ggra7033.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J2771.100e-9346.56C2H2-type domain-containing protein n=1 Tax=Gracil... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 9..32
e-value: 0.013
score: 24.7
coord: 72..97
e-value: 30.0
score: 9.1
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 11..32
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 9..32
score: 9.805782
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 221..242
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 211..368
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 243..279
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 309..338

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000062_piloncontigtig00000062_pilon:119880..121121 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7033.t1Ggra7033.t1Gracilaria gracilis GNS1m malemRNAtig00000062_pilon 119880..121121 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7033.t1 ID=Ggra7033.t1|Name=Ggra7033.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=414bp
MSSSPRQLRICPQCGKKFGKEPKLERHLLEVHGATLSIPPPTTPPSPSFL
LVETQLESALAEANRCFQLGNPSCRLCVHKKPFKNSRDLAQHLVSKHEKQ
LMCAETVPLPCPPTSSEVSAKPDVRVQLRSNVPHKRVHIEDSLPTDQPQL
KKAKVSTPGIPSAAHDLRSAPSECKKLASTSIAPIASVKPTPGADQRTNA
AMKFALPTRTATAPGDALTKPALRDKGRASDNHKRVRIDDSPPTNERSQV
ISPLGDGKNARSNAASSIFAQNVSMKPSVHADRTETPGTGDAKDATAGSA
KKLIQRSKSAPIVNHSAALSSNSSSRSGTPSSGSKPPVTPKRSKAVLAPK
DSMKKASSPGATTGAKASSIENKTMPIFNPLRGIIHKQTTMMDFSSVGLG
SNTRKSYYTLKNS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type