Ggra6960.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6960.t1
Unique NameGgra6960.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length113
Homology
[Close]
BLAST of Ggra6960.t1 vs. uniprot
Match: R7Q5Y4 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q5Y4_CHOCR)

HSP 1 Score: 117 bits (294), Expect = 4.560e-31
Identity = 78/111 (70.27%), Postives = 88/111 (79.28%), Query Frame = 0 
Query:    1 MVYVRNGRVVHTASRGPWPFCLVPGFGFLMHLWSVVLVFLQSIFVPSAANRARRGPLPRSSRFYGGGXXXXXXXXXXXXXXXXXXXXXXPNGAVAGMDSLPSSAASTCLTC 111
            M YVRNGRVV  ASRGPWP CL+PGFG L+ +W+ ++VF+ SIF PSAA +ARR P PRSSRFYG GXXXXXXXXXXXXXXXXXXX      A  GMD+LPSSA STC +C
Sbjct:   86 MAYVRNGRVVQNASRGPWPLCLIPGFGLLLDVWAALVVFITSIFKPSAAKQARRKPAPRSSRFYGAGXXXXXXXXXXXXXXXXXXXGPS---AFGGMDTLPSSANSTCASC 193
The following BLAST results are available for this feature:
BLAST of Ggra6960.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
R7Q5Y44.560e-3170.27Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024491Selenoprotein SelK/SelGPFAMPF10961SelK_SelGcoord: 2..88
e-value: 5.7E-9
score: 36.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..98
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 50..112
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..27
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 28..49
NoneNo IPR availableTMHMMTMhelixcoord: 22..44

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000115_piloncontigtig00000115_pilon:401700..402128 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6960.t1Ggra6960.t1Gracilaria gracilis GNS1m malemRNAtig00000115_pilon 401700..402128 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6960.t1 ID=Ggra6960.t1|Name=Ggra6960.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=113bp
MVYVRNGRVVHTASRGPWPFCLVPGFGFLMHLWSVVLVFLQSIFVPSAAN
RARRGPLPRSSRFYGGGGGGGGGGGGGGGGGGGGGSGGGPNGAVAGMDSL
PSSAASTCLTCG*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024491Se_SelK/SelG