Ggra6891.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6891.t1
Unique NameGgra6891.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length856
Homology
BLAST of Ggra6891.t1 vs. uniprot
Match: A0A2V3IUE1 (Polyadenylate-binding protein RBP45A n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUE1_9FLOR)

HSP 1 Score: 794 bits (2050), Expect = 5.450e-274
Identity = 424/632 (67.09%), Postives = 496/632 (78.48%), Query Frame = 0
Query:  238 AQSVQLSIPSRTDNSTTPADSQTYVLSRTMNVSSATVPYQLVTPPTNPQFTQGSGAALHTQTGKRGGKDAVTTVTTSTTNP--------VGHTLPSETTTTKKD------CPSKEGEAGESDKIAQFVSRVKASVDGHRARPLICQDINNSNADTLRISRLPRGVTYDRLYSMVEPFGEVEELTWSASDPYMCEVTYSDPSAAHEAKHFLGDALVGSDSEPPLKAELHSREAGAQLFVGDLTPDVTEEMLEAAFSKLVGEPVTALLKRDPDSFSPIGYGFLSFKNESSANFALVAGHRAKIGNANVRVGRAERNTYLYVSDLSPSVSMSEVKDLFARFGSLVDEDTVIIRRSYAFLRYKNRNSAEKAKRTLDKTDLKGRLSVRYAEAEPLKACVAVQFHSSVPRPPNSLRDLLTATFSKHGNCSVEIPRLSNGMWRKVAFVTFHGDSLAANLAALDAVQSIRFVSSLPVCCQFARELIPRLPSKGLTVERGSEANVTKSNLTSPSERVTAKLFQTKKNNMRRSEQLPNVSKGNINVSQNNPETPRNEFQSEKQARAPNLVPIYVPITALQHPNCQLPPGSIVGTEGASAPYQWSGRVLLPSGSNGDAMGHPASNVNSSYNSFGRMPEPRAKW 855
            +QSV +   +  ++S++P +SQ   +          VPYQLV+P + P   + + A          G D +   +   TNP        VG T  ++ ++   D      C  K  +  E D+IA+ VSR+KA  DG R RPLICQDI NSNADTLRISRLPRGVTYDRLYSMVEPFG+VE+L W  SDPY+CEVTY DP+AAHEAKHFLGDALVGSD+EPPLK EL+SR+ GAQLFVGDLTPDVTEEMLEAAFSKLVGEPVTALLKRDPDSFSPIGYGFLSFK+ESSANFALVAGHRAKIGNA VRVGRAERNTYLY+SDLSP+V+MSE+K+ F +FGSLV+EDTVI++R+YAF+RYKNRN+AEKAKRTLDKTDLKGRLSVRYAEAEPLKACVAVQFHSSVPRPPNSLRDLLTATFSKHGNCSVEIPRL+NGMWRKVAFVTFHGD +AANLAAL+AVQSIRFVSSLPVCCQFARELIPRLPSKGL VERG E +V +SN   P ERVTAKLF +K++ +RRSE +   +KG+       PE    EF+++   R PN VP+YVP+TALQHPN  LPPGS++G EG SAPY WSGRVL+P GS  + +G   +++ S+YNSFG  P+  ++W
Sbjct:  347 SQSVHVGKQALVEHSSSPCESQQSFVFAGRAAPFNQVPYQLVSPTSQPSGQRLAAAP---------GNDLIQE-SAPNTNPIPASDNASVGQTDNAQDSSVASDGKPRIDCDRKSED--EVDRIAELVSRIKAPSDGPRPRPLICQDITNSNADTLRISRLPRGVTYDRLYSMVEPFGDVEDLVWVPSDPYVCEVTYRDPAAAHEAKHFLGDALVGSDAEPPLKVELYSRDPGAQLFVGDLTPDVTEEMLEAAFSKLVGEPVTALLKRDPDSFSPIGYGFLSFKSESSANFALVAGHRAKIGNACVRVGRAERNTYLYISDLSPNVTMSELKEAFGKFGSLVEEDTVIVKRTYAFVRYKNRNAAEKAKRTLDKTDLKGRLSVRYAEAEPLKACVAVQFHSSVPRPPNSLRDLLTATFSKHGNCSVEIPRLANGMWRKVAFVTFHGDPMAANLAALEAVQSIRFVSSLPVCCQFARELIPRLPSKGLIVERGDEQSVGRSNYDVPPERVTAKLFPSKRSVIRRSENVTGGAKGSSRSGPVIPERRGAEFRNDGHGRGPNYVPVYVPVTALQHPNTPLPPGSVIGNEGTSAPYHWSGRVLVP-GSASEGVGPHGNHLGSNYNSFG--PDRYSRW 963          
BLAST of Ggra6891.t1 vs. uniprot
Match: polyadenylate-binding protein 2-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DD2CB (polyadenylate-binding protein 2-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DD2CB)

HSP 1 Score: 348 bits (894), Expect = 7.760e-109
Identity = 180/318 (56.60%), Postives = 236/318 (74.21%), Query Frame = 0
Query:  388 VTYDRLYSMVEPFGEVEELTWSASDPYMCEVTYSDPSAAHEAKHFLGDALVGSDSEPPLKAELHSREAGAQLFVGDLTPDVTEEMLEAAFSKLVGEPVTALLKRDPDSFSPIGYGFLSFKNESSANFALVAGHRAKIGNANVRVGRAERNTYLYVSDLSPSVSMSEVKDLFARFGSLVDEDTVIIRRSYAFLRYKNRNSAEKAKRTLDKTDLKGRLSVRYAEAEPLKACVAVQFHSSVPRPPNSLRDLLTATFSKHGNCSVEIPRLSNGMWRKVAFVTFHGDSLAANLAALDAVQSIRFVSSLPVCCQFARELIPRLP 705
            +T + +  +V+ FGEV  + +++ +P   EV Y+D  +A +A H+L +A +G  S+ PL A L S   G QLFVGDLT DVTE+MLE AF K+   PV A+LKRD  +FSPIGYGFL F+NES+A+ ALV GHR +IGNA VR+GRAERNT+LYV++L+PSV++ ++K+ F  FG LVD+DT II RSYAF+R+ NR SAE+AKR+LDKTDL GR++VRY E E  K+ V VQF  S+ RP   +++LL ++FSK+G CSVEIP L NG WR VAFV + G+  AA LAA  A+Q+IRFVS  PV CQF+RELIP +P
Sbjct:    1 MTCEHVSELVQAFGEVSVIRYNSENPCSTEVVYADSVSAEDAVHYLNNAKIGV-SDVPLMATLGSHRFGTQLFVGDLTMDVTEKMLEDAFRKIAWSPVRAILKRDSKTFSPIGYGFLYFQNESAADRALVHGHRVRIGNALVRLGRAERNTFLYVTELNPSVTLQDLKETFGAFGELVDDDTTIIHRSYAFVRFYNRQSAERAKRSLDKTDLNGRITVRYGETESNKSTVHVQFCRSLSRPLPMIQELLKSSFSKYGRCSVEIPLLRNGTWRHVAFVHYIGEPFAAALAATLAIQNIRFVSDFPVSCQFSRELIPYMP 317          
BLAST of Ggra6891.t1 vs. uniprot
Match: A0A5J4X886 (Putative RNA-binding protein n=1 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4X886_9EUKA)

HSP 1 Score: 97.1 bits (240), Expect = 9.020e-19
Identity = 68/240 (28.33%), Postives = 125/240 (52.08%), Query Frame = 0
Query:  454 EAGAQLFVGDLTPDVTEEMLEAAFSKLVGEPVTALLKRDPDSFSPIGYGFLSFKNESSANFALVAGHRAKIGNANVRVGRAERNTYLYVSDLSPSVSMSEVKDLFARFGSLVDEDTVIIRRSYAFLRYKNRNSAEKAKRTLDKTDLKG-RLSVRYAEAEPLKACVAVQFHS------SVPRPPNSLRDLLTATFSKH-----GNCS-----------VEIPRLSNGMWRKVAFVTFHGDS 670
            + G  +FVGDL  +VTEE L   F+K  G    A +K+D  + + +GYGF+ F +  SA   L    +  I +  +++G AERNT + VS+L    S +E++ LF++FG++   + +   R  +F++YK RN A++A++ +    ++G +L + +A++  L+  V ++F+       +V    N   +    T +KH      N             +E+P+   G +R + FV F+ ++
Sbjct:    4 DEGKGIFVGDLDSEVTEEELVDLFTKF-GSVQRATIKKDKYTTNSLGYGFVYFDSAESAQNVLQQNQKQWIHSRPMKIGPAERNTNICVSNLPEDTSENEIRSLFSQFGTITQVEYLPQNRQ-SFIKYKKRNEAQEARKKMSDEIIRGCQLKIGWADSASLQTSVLLRFNRKWADQMAVDDKSNRQNENSNETQTKHELFNENNIKLQLQKYGEIIRIELPKQEGGNYRGIGFVHFNANA 241          
BLAST of Ggra6891.t1 vs. uniprot
Match: A0A7S3Z8S4 (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z8S4_9EUKA)

HSP 1 Score: 97.4 bits (241), Expect = 1.880e-17
Identity = 83/275 (30.18%), Postives = 132/275 (48.00%), Query Frame = 0
Query:  459 LFVGDLTPDVTEEMLEAAFSKLVGEPVTALLKRDPDSFSPIGYGFLSFKNESSANFALVAGHRAKIGNANVRVGRAERNTYLYVSDLSPSVSMSEVKDLFARFGSLVDEDTVI-IRRSYAFLRYKNRNSAEKAKRTLDKTDL-KGRLSVR--YAEAEPLKACVAVQFHSSVPRPPNSLRDL------LTATFSKHGNC-SVEIPRLSNGMWRKVAFVTFHGDSLAANLAALDAVQSIRF--VSSLPVCCQFARELIPRLPSKGLTVERGSEANVT 720
            +FVGDL+  V ++ L     +  G  V   +KRD  + + +GYGF+ F+    A  A  A H   +    +R G A+RNT L+V DL   V  SE +  FAR+GSLV ++T   + + +  ++YK R +AE AK  L+   + K +  VR  + +    K CV V+F   V +   +++D       L   FS++G   SV +PR ++   +   FV F  DS     +A  A+ ++    +  L + C + R+   R    G T    S    T
Sbjct:  110 IFVGDLSRTVRDKDLRTVMEQH-GTVVNVDIKRDKVTHNNLGYGFVQFETHEEAVKAKKALHGVVVSGRKIRTGWAQRNTTLFVGDLDSFVDESEYRAAFARYGSLVLDETYFKVDKGFGMVKYKTRENAETAKMELNGKKIGKSKRPVRVIWGDTSVQKHCVHVKF--DVGKEVKTIQDSDISEDDLQKVFSEYGQVQSVNLPRHNDQSLKGYGFVHFE-DSEKGEESAKKAIANLSGTKIGRLVIQCNYGRKHSKRRQRNGTTNNNSSNVRHT 380          
BLAST of Ggra6891.t1 vs. uniprot
Match: Q93194 (RNP (RRM RNA binding domain) containing n=2 Tax=Caenorhabditis TaxID=6237 RepID=Q93194_CAEEL)

HSP 1 Score: 84.3 bits (207), Expect = 6.110e-14
Identity = 62/195 (31.79%), Postives = 100/195 (51.28%), Query Frame = 0
Query:  419 TYSDPSAAHEA-KHFLGDALVGSDSEPPLKAELHSREAGAQLFVGDLTPDVTEEMLEAAFSKLVGEPVTALLKRDPDSFSPIGYGFLSFKNESSANFALVAGHRAKIGNANVRVGRAER----------------------NTYLYVSDLSPSVSMSEVKDLFARFGSLVDEDTVIIRRSYAFLRYKNRNSAEKA 590
            T S PS +H    H L  A++ S SEPP++  + + +    +FVGDL+ DV+ E+L++ F+K  GE   A + RD  +    GYGF+SF N+ +A  A+   +   IG   VR   A R                      NT +YV ++S   + ++++DLF+ +G +  E  +   + YAF+RY+ +  A KA
Sbjct:   49 TASLPSLSHIGLPHSLESAVLHSASEPPMEMRIDTSKH-FHVFVGDLSKDVSNELLKSTFTKF-GEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGMNGKWIGKRAVRTNWAARKNSEENRDKLTFEQVFNSTKADNTSVYVGNISQQTTDADLRDLFSTYGDIA-EVRIFKTQRYAFVRYEKKECATKA 240          
BLAST of Ggra6891.t1 vs. uniprot
Match: A0A2G8LEA1 (Nucleolysin TIA-1 isoform p40 n=2 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8LEA1_STIJA)

HSP 1 Score: 84.7 bits (208), Expect = 1.050e-13
Identity = 67/238 (28.15%), Postives = 112/238 (47.06%), Query Frame = 0
Query:  381 ISRLPRGVTYDRLYSMVEPFGEVEELTW-----SASDPYMCEVTYSDPSAAHEAKHFL-GDALVGSDSEPPLKAELHSREAGAQLFVGDLTPDVTEEMLEAAFSKLVGEPVTALLKRDPDSFSPIGYGFLSFKNESSANFALVAGHRAKIGNANVRVGRAER----------------------NTYLYVSDLSPSVSMSEVKDLFARFGSLVDEDTVIIRRSYAFLRYKNRNSAEKA 590
            +  L + VT D +  +    G+V+           +DPY C V ++D +AA  AKH + G  ++G + +         +E    LFVGDL P+V +++L  AF +  G    A + +D ++    GYGF++F  ES A  A+     A +G   +R   A R                      NT +Y+ +   S S +EV+++F  FG ++ E  V   R+YAF++Y + + A +A
Sbjct:    4 VGNLSKEVTQDYILYLFSQIGDVKGCKMIQDPNGVNDPY-CFVEFNDRNAAEHAKHSVNGRVVIGRNIKVNWATTSAKKEKTFSLFVGDLAPEVDQDLLTKAF-RPYGLVADARVVKDMNTGHSKGYGFVAFARESDAENAMKQMSGAVLGGKPIRTNWASRKQNQSKGEAKEYKSVFDKTSEANTTVYIGNTPDSFSEAEVRNMFETFGQIL-EVRVYPDRNYAFVKYSDHDQAAQA 238          
BLAST of Ggra6891.t1 vs. uniprot
Match: A8XQM8 (Protein CBR-TIAR-3 n=1 Tax=Caenorhabditis briggsae TaxID=6238 RepID=A8XQM8_CAEBR)

HSP 1 Score: 72.0 bits (175), Expect = 5.120e-10
Identity = 52/165 (31.52%), Postives = 82/165 (49.70%), Query Frame = 0
Query:  459 LFVGDLTPDVTEEMLEAAFSKLVGEPVTALLKRDPDSFSPIGYGFLSFKNESSANFALVAGHRAKIGNANVRVGRAER----------------------NTYLYVSDLSPSVSMSEVKDLFARFGSLVDEDTVIIRRSYAFLRYKNRNSAEKAKRTLDKTDLKG 601
            +FVGDL+ DV+ E+L++ F K  GE   A + RD  +    GYGF+SF N+ +A  A+   +   IG   VR   A R                      NT +YV ++SP  +  +++D F+ +G +  E  V   + YAF+RY+ +  A KA   ++  +L G
Sbjct:   55 VFVGDLSKDVSNELLKSTFQKF-GEVSEAKVIRDAQTQKSKGYGFVSFPNKQNAENAISGMNGKWIGKRAVRTNWAARKNSEENRDKLTFEQVFNSTKADNTSVYVGNISPQTTDVDLRDSFSTYGDIA-EVRVFKTQRYAFVRYEKKECATKAIMEMNGKELAG 217          
BLAST of Ggra6891.t1 vs. uniprot
Match: A0A0B7N8V3 (Uncharacterized protein n=6 Tax=Mucoraceae TaxID=34489 RepID=A0A0B7N8V3_9FUNG)

HSP 1 Score: 70.5 bits (171), Expect = 1.970e-9
Identity = 64/264 (24.24%), Postives = 114/264 (43.18%), Query Frame = 0
Query:  375 NADTLRISRLPRGVTYDRLYSMVEPFGEVEELTWSASDPYMCEVTYSDPSAAHEAKHFLGDALV---------GSDSEPPLKAELHSREAGAQLFVGDLTPDVTEEMLEAAFSKLVGEPVTALLKRDPDSFSPIGYGFLSFKNESSANFALVAGHRAKIGNANVRVGRAERN---------------------------TYLYVSDLSPSVSMSEVKDLFARFGSLVDEDTVIIRRSYAFLRYKNRNSAEKAKRTLDKTDLKGR 602
            +A T+ +  L + VT D L     P G +      A       V +++P++A  A   L    V             +   K E  +     Q+F+GDL P++T+E+L  AF  + G  V A + RD  S +  G+GF++++ +S A+ A+ + +   +G+ N+RV  A +                            T +YV +L P+ S +++   F RFG  + E  +   + +AF++     +A  A   L   ++ GR
Sbjct:    2 SAATVYVGNLDQRVTDDMLLECFSPMGAITNTKIVAPSVNYGFVEFAEPNSADRAIQELNGYKVLDYEIKVNWAQQGQHSQKEETPNHH---QIFIGDLAPEITDELLSQAFG-VFGNLVNAHVMRDTMSGNSRGFGFVAYREKSEADQAIASMNGELLGSRNIRVNWATQKGQSDAPSPRPGQQLPYETVLQQTPGYVTSVYVGNLPPNTSDNDLLQPFQRFG-FIQEVKLQADKGFAFVKLDTHQNAANAIVHLQSMNINGR 260          
BLAST of Ggra6891.t1 vs. uniprot
Match: A0A0N5AN77 (Uncharacterized protein n=1 Tax=Syphacia muris TaxID=451379 RepID=A0A0N5AN77_9BILA)

HSP 1 Score: 70.5 bits (171), Expect = 2.840e-9
Identity = 73/243 (30.04%), Postives = 110/243 (45.27%), Query Frame = 0
Query:  400 FGEVEELTWSASD------PYMCEVTYSDPSAAHEAKHFLGDALVGSDSEPPLKAELHSREAGA-------QLFVGDLTPDVTEEMLEAAFSKLVGEPVTALLKRDPDSFSPIGYGFLSFKNESSANFALVAGHRAKIGNANVRVGRAER--------------------------NTYLYVSDLSPSVSMSEVKDLFARFGSLVDEDTVIIRRSYAFLRYKNRNSAEKAKRTLDKTDLKGRL 603
            FGEV E+T +  +      P+   V + D S+A EA   L  A +  D E   K    S +          Q+FVGDLT DV  ++L  AFS+  G    A +  DP +  P GYGF+S+  +  A  A+   + A +G+  +R   A R                          N  +YV ++  SVS  E++ LF +FG L+ E  +   +S AFLRY+ +  A  A   ++  +L GR+
Sbjct:   79 FGEVGEVTRTQINFKDYALPHAF-VEFVDSSSAAEAAQKLNGAKI-LDQEIATKVLGKSSDKDRSESAQHFQVFVGDLTYDVDNQVLRDAFSQF-GNISDAKVIIDPTTQRPKGYGFVSYPTKEEAERAIEQMNGAWLGHRQIRTNWANRRLEPAEVHHKRRELSYADVYNKAGADNCSVYVGNVESSVSEEELRRLFEQFGKLM-EVRLCKSKSCAFLRYEKKEYACSAITEMNNKELNGRI 317          
BLAST of Ggra6891.t1 vs. uniprot
Match: A0A2P6TNN5 (Oligouridylate-binding 1-like n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TNN5_CHLSO)

HSP 1 Score: 69.7 bits (169), Expect = 1.350e-8
Identity = 54/151 (35.76%), Postives = 75/151 (49.67%), Query Frame = 0
Query:  459 LFVGDLTPDVTEEMLEAAFSKLVGEPVTALLKRDPDSFSPIGYGFLSFKNESSANFALVAGHRAKIGNANVRVGRAER-------------------NTYLYVSDLSPSVSMSEVKDLFARFGSLVDEDTVIIRRSYAFLRYKNRNSAEKA 590
            +FVGDL+ DVT+ ML AAFS   G    A +  D  +    GYGF+SF++   A  A+   H   IG   VR G A+                    NT +YV +LSPS+S +EV+  F  FG +  E  +  + SY F+R+K    A +A
Sbjct:  230 VFVGDLSSDVTDAMLHAAFSACPGCS-DARVMWDHATGRSRGYGFVSFRHREQAEAAIQMMHGQFIGARRVRCGWAQHKTDGIVTMDPQILDRADPTNTNVYVGNLSPSLSDAEVRRHFGAFGPIA-EVKLYRKGSYGFVRFKAHADAVRA 378          
The following BLAST results are available for this feature:
BLAST of Ggra6891.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IUE15.450e-27467.09Polyadenylate-binding protein RBP45A n=1 Tax=Graci... [more]
polyadenylate-binding protein 2-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DD2CB7.760e-10956.60polyadenylate-binding protein 2-like n=1 Tax=Merce... [more]
A0A5J4X8869.020e-1928.33Putative RNA-binding protein n=1 Tax=Streblomastix... [more]
A0A7S3Z8S41.880e-1730.18Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
Q931946.110e-1431.79RNP (RRM RNA binding domain) containing n=2 Tax=Ca... [more]
A0A2G8LEA11.050e-1328.15Nucleolysin TIA-1 isoform p40 n=2 Tax=Stichopus ja... [more]
A8XQM85.120e-1031.52Protein CBR-TIAR-3 n=1 Tax=Caenorhabditis briggsae... [more]
A0A0B7N8V31.970e-924.24Uncharacterized protein n=6 Tax=Mucoraceae TaxID=3... [more]
A0A0N5AN772.840e-930.04Uncharacterized protein n=1 Tax=Syphacia muris Tax... [more]
A0A2P6TNN51.350e-835.76Oligouridylate-binding 1-like n=1 Tax=Chlorella so... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 539..606
e-value: 5.0E-8
score: 42.7
coord: 378..447
e-value: 0.11
score: 15.1
coord: 458..532
e-value: 3.9E-11
score: 53.0
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 540..602
e-value: 1.3E-9
score: 37.7
coord: 459..529
e-value: 9.4E-11
score: 41.4
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 457..536
score: 13.140219
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 538..610
score: 12.560335
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 536..615
e-value: 2.0E-12
score: 49.1
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 439..535
e-value: 7.0E-13
score: 50.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..113
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 92..113
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 741..768
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 317..342
NoneNo IPR availablePANTHERPTHR10352EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT Gcoord: 435..601
coord: 539..700
NoneNo IPR availableCDDcd00590RRM_SFcoord: 540..606
e-value: 1.2253E-12
score: 61.9373
NoneNo IPR availableCDDcd00590RRM_SFcoord: 459..531
e-value: 4.03359E-12
score: 60.3965
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 374..438
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 458..603

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:901304..904478 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6891.t1Ggra6891.t1Gracilaria gracilis GNS1m malemRNAtig00000056_pilon 901304..904478 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6891.t1 ID=Ggra6891.t1|Name=Ggra6891.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=856bp
MQQPMRSARGGRAARAHVKHHSSSSSADGAPPNESHPASDHALQEASKPS
ARHPLPSSSLRPRRPYPRHRKGKNRSDHQFEPAPSAPADLRPSDHQSASS
STKPLHHHVQSLSSSQLPVVKTLLTKSDTSTAHVTLPPQLSVPAVASPAV
SQLATAIHSLPPQALHQTMEQHHQHQLPIQVQMANHMAAQHMSLSQAMMH
PQRQVVLHPQYCPPVNEAVFTPDTNTVNVNAHTMPAQAQSVQLSIPSRTD
NSTTPADSQTYVLSRTMNVSSATVPYQLVTPPTNPQFTQGSGAALHTQTG
KRGGKDAVTTVTTSTTNPVGHTLPSETTTTKKDCPSKEGEAGESDKIAQF
VSRVKASVDGHRARPLICQDINNSNADTLRISRLPRGVTYDRLYSMVEPF
GEVEELTWSASDPYMCEVTYSDPSAAHEAKHFLGDALVGSDSEPPLKAEL
HSREAGAQLFVGDLTPDVTEEMLEAAFSKLVGEPVTALLKRDPDSFSPIG
YGFLSFKNESSANFALVAGHRAKIGNANVRVGRAERNTYLYVSDLSPSVS
MSEVKDLFARFGSLVDEDTVIIRRSYAFLRYKNRNSAEKAKRTLDKTDLK
GRLSVRYAEAEPLKACVAVQFHSSVPRPPNSLRDLLTATFSKHGNCSVEI
PRLSNGMWRKVAFVTFHGDSLAANLAALDAVQSIRFVSSLPVCCQFAREL
IPRLPSKGLTVERGSEANVTKSNLTSPSERVTAKLFQTKKNNMRRSEQLP
NVSKGNINVSQNNPETPRNEFQSEKQARAPNLVPIYVPITALQHPNCQLP
PGSIVGTEGASAPYQWSGRVLLPSGSNGDAMGHPASNVNSSYNSFGRMPE
PRAKW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf