Ggra6857.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6857.t1
Unique NameGgra6857.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length486
Homology
BLAST of Ggra6857.t1 vs. uniprot
Match: A0A2V3IP86 (Phycobilisome 32.1 kDa linker polypeptide, phycocyanin-associated, rod n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IP86_9FLOR)

HSP 1 Score: 700 bits (1807), Expect = 1.050e-249
Identity = 366/491 (74.54%), Postives = 405/491 (82.48%), Query Frame = 0
Query:    1 MAVEFQTYSGGLDRVSQAPYSITRYLFKDRPMSLTEEDKEVVIATALRQLFGNAYLMEEERAQFYTAESNYRCGRITAKEFARAVAKSDTYRQRFFDRVTQFRFIELNFKHFMGRAPLNQVEYSKHFKIFAAGGYDAEIDSYFDDPEYDEVFGEDIFPFTRFRGTYAPINQFNRMCTIQGGFAGSDKFKPQMLVTSLAANVPTPAYSVVDGLPPIPNGQHPSKKYDLPPVSLERFINELDIAQARAYQLQIELDQAYAELDNSRDIIDPFKAMVKDMDITPLYGRNYGNGAVKVFPGQYEGAPMGEWGPSGVDAINGPTRRPATDVSKKEEELERVKQLVVDIERRITVLSAEREKPALTPQPMIYELEGLEFP-----VVEEEPVETGPVVIQPSGVATAVPAAAEGEEIKVDPSILPGDIDVEKDDSGVIPPKPIVVSTKREFKDVGRLPKELMEEMEEEKKAAGKDFLSGK-GMSSFPGDGSEMTIGG 485
            M +EFQTYSGGLD +SQ PY+ITRYLFK  P  L  EDKE VI TALR LFGNAYLMEEERAQFYTAESNYRCGRITAK+FARAVAKS+TYR+RFF  VTQFRFIELNFKHF+GRAPLNQVEYSKHFKIFAAGGYDAEIDSYFDDPEYD VFG+D FPFTRFRGTYAPINQFNRMCT++GGFA SDKFKPQMLVTSLAAN PTPAY+VVDGLPPIPN +HPS+KY LP VSLERFINEL IA+ARAYQLQIELD AY +L  SRD I PFK+MV DMDITPLYG+NYG+GAVKVF GQYEGAP   WG SGVD +NGPTRRPA  VSKKE+ELERVKQL+VD+ERR+ VL AERE PALTP P+ +ELEG+E       VV E P    PVVIQP      +P     E +  DP++LP  +D   DDSGV+ PKP+VVST R+ ++VG +PK L+EEME E KA+GK FL GK G  SFPGDGSEMTIGG
Sbjct:   44 MQLEFQTYSGGLDMISQHPYAITRYLFKPAPQVLYAEDKESVINTALRHLFGNAYLMEEERAQFYTAESNYRCGRITAKQFARAVAKSETYRKRFFGNVTQFRFIELNFKHFLGRAPLNQVEYSKHFKIFAAGGYDAEIDSYFDDPEYDLVFGDDYFPFTRFRGTYAPINQFNRMCTLRGGFAASDKFKPQMLVTSLAANTPTPAYTVVDGLPPIPNAEHPSQKYQLPSVSLERFINELAIARARAYQLQIELDAAYEKLSASRDAIQPFKSMVSDMDITPLYGKNYGSGAVKVFTGQYEGAPAASWGASGVDRLNGPTRRPANTVSKKEKELERVKQLIVDLERRVAVLRAERESPALTPTPLRFELEGIELAEQAPQVVPETP---EPVVIQP----VEIPVE---EGLLPDPNLLPDAVDEAADDSGVVVPKPVVVSTSRQLQEVGEVPKVLIEEMEAESKASGKSFLEGKSGKPSFPGDGSEMTIGG 524          
BLAST of Ggra6857.t1 vs. uniprot
Match: R7QQQ6 (PBS-linker domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QQQ6_CHOCR)

HSP 1 Score: 585 bits (1507), Expect = 9.730e-205
Identity = 314/489 (64.21%), Postives = 361/489 (73.82%), Query Frame = 0
Query:    1 MAVEFQTYSGGLDRVSQAPYSITRYLFKDRPMSLTEEDKEVVIATALRQLFGNAYLMEEERAQFYTAESNYRCGRITAKEFARAVAKSDTYRQRFFDRVTQFRFIELNFKHFMGRAPLNQVEYSKHFKIFAAGGYDAEIDSYFDDPEYDEVFGEDIFPFTRFRGTYAPINQFNRMCTIQGGFAGSDKFKPQMLVTSLAANVPTPAYSVVDGLPPIPNGQHPSKKYDLPPVSLERFINELDIAQARAYQLQIELDQAYAELDNSRDIIDPFKAMVKDMDITPLYGRNYGNGAVKVFPGQYEGAPMGEWGPSGVDAINGPTRRPATDVSKKEEELERVKQLVVDIERRITVLSAEREKPALTPQPMI---YELEGLEFPVVEEEPVETGPVVIQPSGVATAVPAAAEGEEIKVDPSILPGDIDVEKDDSGVIPPKPIVVSTKREFKDVGRLPKELMEEMEEEKKAAGKDFLSGKG-MSSFPGDGSEMTIGG 485
            M VEFQTYSGGLDRVS  PY+ITR LF   P +L  E+K+V  A  LRQLFGNAYLMEEERAQFY AES YRC +ITAKEF RA AKS TYRQ                    GRAPLNQVEYSKHFKIFAAGG+DAEIDSYFDDPEYD+VFGED+ P+TRFRGTYAPINQFNRMCTI+GGFAGSDK KPQMLVTSLAANVPT A+SVVDGLP IPN +H SKKYDLP  SLERF NEL+IA A+AYQLQIEL++AY +L   RD  +PFKAM +DM+IT LYG NYG+G V VF G+Y GA  G WGPSGVD INGPTRRPA  + KKE++LERVKQL+VD+ER+++VL AEREKPALTP   I    +++  E                            AE E +     I+P  +DVE ++SG++ P+ + V TKR+ KDVGRLPKELMEE+EEEKKA+G+DFL GKG   +FPGDGSEM IGG
Sbjct:    1 MNVEFQTYSGGLDRVSIDPYTITRDLFTPLPQNLNPEEKDVATAAGLRQLFGNAYLMEEERAQFYNAESQYRCDQITAKEFLRAAAKSQTYRQXXXXXXXXXXXXXXXXXXXXGRAPLNQVEYSKHFKIFAAGGFDAEIDSYFDDPEYDDVFGEDVMPYTRFRGTYAPINQFNRMCTIEGGFAGSDKCKPQMLVTSLAANVPTSAFSVVDGLPAIPNSEHQSKKYDLPDASLERFRNELEIAAAKAYQLQIELNEAYEKLSGFRDYANPFKAMAQDMNITQLYGSNYGSGKVSVFAGEYIGAKAGSWGPSGVDNINGPTRRPAVVIGKKEKQLERVKQLIVDLERKVSVLEAEREKPALTPGVSISGFMDMQQQEVAXXXXXXXXXXXXXXXXXXXRVIEVQPAEAENL-----IVPELVDVEDEESGLVKPQSVQVETKRQIKDVGRLPKELMEEIEEEKKASGQDFLEGKGPREAFPGDGSEMVIGG 484          
BLAST of Ggra6857.t1 vs. uniprot
Match: A0A291FEB8 (LRC3 n=1 Tax=Griffithsia pacifica TaxID=35689 RepID=A0A291FEB8_GRIPA)

HSP 1 Score: 514 bits (1323), Expect = 2.250e-176
Identity = 283/486 (58.23%), Postives = 347/486 (71.40%), Query Frame = 0
Query:    1 MAVEFQTYSGGLDRVSQAPYSITRYLFKDRPMSLTEEDKEVVIATALRQLFGNAYLMEEERAQFYTAESNYRCGRITAKEFARAVAKSDTYRQRFFDRVTQFRFIELNFKHFMGRAPLNQVEYSKHFKIFAAGGYDAEIDSYFDDPEYDEVFGEDIFPFTRFRGTYAPINQFNRMCTIQGGFAGSDKFKPQMLVTSLAANVPTPAYSVVDGLPPIPNGQHPSKKYDLPPVSLERFINELDIAQARAYQLQIELDQAYAELDNSRDIIDPFKAMVKDMDITPLYGRNYGNGAVKVFPGQYEGAPMGEWGPSGVDAINGPTRRPATDVSKKEEELERVKQLVVDIERRITVLSAEREKPALTPQPMIYELEGLEFPVVEEEPVETGPVVIQPSGVATAVPAAAEGEEIKVDPSILPGDIDVEKDDSGVIPPKPIVVSTKREFKDVGRLPKELMEEMEEEKKAAGKDFLSGK-GMSSFPGDGSEMTIGG 485
            MA+EFQTYSGGLDRVS  PYSITRYLFK  P ++T+ DK+V I   LRQLFGNAY+MEEERA+FY AES +RCG ITA+EFARAVA S+ YR                     GRAPLNQVEYSKHFKIFA GGY+AEI+SYFDDPEYDEVFG+D  PFTRFRGTYAPINQFNRMC ++GGFA SDK +P  L+TSLAANVP  AY VVDGLP IPN +HP++K++LP  SLERF NE+++A+AR  QL++EL +AYA+ D  R     F+AM  DMDI+ L G  +  G V+ +P  ++G     WG SGVD ++G  +RPA +++KKE +LER+KQLVVD+ERR+ VL AERE+PALTP+P+++ELEGL   V EEE VE     +   G   +  +A       V P     DID E +DSG++ PK + V T R  KDVG LP +LM+E+EE+ KA GK+F   K G  SFPGDGSEM IGG
Sbjct:   41 MAIEFQTYSGGLDRVSLEPYSITRYLFKPAPATVTDGDKDVAINAGLRQLFGNAYIMEEERAEFYNAESKFRCGEITAREFARAVALSNAYRSXXXXXXXXXXXXXXXXXXXXGRAPLNQVEYSKHFKIFAEGGYEAEINSYFDDPEYDEVFGDDCMPFTRFRGTYAPINQFNRMCVLEGGFAMSDKQRPVQLMTSLAANVPPAAYRVVDGLPAIPNAEHPTRKFELPNASLERFRNEVEVAKARELQLRVELKEAYAKRDEYRSGFAGFRAMAADMDISMLPGPRF-QGRVENYP-TWDGKSA-PWGKSGVDTLSGVEKRPAKEIAKKEFQLERIKQLVVDLERRVAVLEAEREQPALTPEPLMFELEGLPQIVKEEEVVEE----VTTPGTGVSELSADFDSTTMVTP-----DIDPESEDSGIVAPKTVEVETSRLAKDVGDLPGKLMKELEEKTKAEGKEFGGPKDGRLSFPGDGSEMVIGG 514          
BLAST of Ggra6857.t1 vs. uniprot
Match: A0A1X6NJY8 (PBS-linker domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NJY8_PORUM)

HSP 1 Score: 414 bits (1064), Expect = 1.690e-137
Identity = 239/494 (48.38%), Postives = 312/494 (63.16%), Query Frame = 0
Query:    7 TYSGGLDRVSQAPYSITRYLFKDRPMSL----TEEDKEVVIATALRQLFGNAYLMEEERAQFYTAESNYRCGRITAKEFARAVAKSDTYRQRFFDRVTQFRFIELNFKHFMGRAPLNQVEYSKHFKIFAAGGYDAEIDSYFDDPEYDEVFGEDIFPFTRFRGTYAPINQFNRMCTIQGGFAGSDKFKP-QMLVTSLAANVPTPAYSVVDGLPPIPNGQHPSKKYDLPPVSLERFINELDIAQARAYQLQIELDQAYAELDNSRDIIDPFKAMVKDMDITPLYGRNYGNGAVKVFPGQYE--GAPMGEWGPSGVDAINGPTRRPATDVSKKEEELERVKQLVVDIERRITVLSAEREKPALTPQPMIYELEGLEFPVVEEEPVETGPVVIQPSGVA---TAVPAAAEGEEIKVDPSILPGDIDVEKDDSGVIPPKPIVVSTKREFKDVGR-LPKELMEEMEEEKKA---AGKDFLSG---KGMSSFPGDGSEMTI 483
            +YSGGLDRVSQ PYSI+R LF   P  +    + E+K+  +  ALRQ+FGNAYLMEEERA+ YT ESN+RCGRI AK+F R +AKS TY++RFF+ V+  RFIEL  KH +GRA L++ E++ H   +A+ GYDA+IDSY D  EY +VFGED+ PF RFRGTYAPIN FNR CT++GG+A SDK  P    V  L  N PT A+SV DGLPPIPN +HPS KY LP  SL+R+ NEL++A+A+A +L I L+ +   L +S+  + PFK MV DMD+TPLYG+ +GNG V+ F GQY+  G   GEWG SGV+A  G TRR A DV  KE+ LE + QL+VD+ER+I  LS+E    +L+P   + +++ LE  V            +  S +    T V    +  +  V  S                 PKP+ V T R F D     P +L++E+E+EKKA   AGK    G       +FPGDGSEM +
Sbjct:   10 SYSGGLDRVSQQPYSISRSLFMPPPAVIANGSSNEEKDATVVRALRQVFGNAYLMEEERAELYTLESNFRCGRIAAKDFVRGLAKSATYKKRFFENVSHNRFIELAHKHLLGRAVLDKAEFAAHAATYASAGYDADIDSYVDSAEYAQVFGEDVVPFVRFRGTYAPINAFNRQCTLEGGWASSDKSSPLASSVGQLLGNTPTSAFSVADGLPPIPNAEHPSAKYTLPNASLQRYRNELEVAKAKALELSIALEASKNNLKSSQKFLSPFKNMVADMDLTPLYGKPFGNGTVEAFSGQYKAPGGAAGEWGVSGVEASKGRTRRAAGDVGAKEKRLESLSQLIVDLERKIATLSSELTARSLSP---VVDVDPLEAAVAAXXXXXXXXXXVTTSAIRIGQTVVRPVEQAADKAVQESXXXXXXXXXA-------PKPVKVITSRAFLDESTPTPGQLIKEIEDEKKALEAAGKSSGFGGPANAKLTFPGDGSEMNV 493          
BLAST of Ggra6857.t1 vs. uniprot
Match: A0A7S0ZG35 (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZG35_9RHOD)

HSP 1 Score: 382 bits (982), Expect = 3.630e-125
Identity = 222/489 (45.40%), Postives = 283/489 (57.87%), Query Frame = 0
Query:    1 MAVEFQTYSGGLDRVSQAPYSITRYLFKDRPMSLTEEDKEVVIATAL----RQLFGNAYLMEEERAQFYTAESNYRCGRITAKEFARAVAKSDTYRQRFFDRVTQFRFIELNFKHFMGRAPLNQVEYSKHFKIFAAGGYDAEIDSYFDDPEYDEVFGEDIFPFTRFRGTYAPINQFNRMCTIQGGFAGSDKFKPQMLVTSLAANVPTPAYSVVDGLPPIPNGQHPSKKYDLPPVSLERFINELDIAQARAYQLQIELDQAYAELDNSRDIIDPFKAMVKDMDITPLYGRNYGNGAVKVFPGQYEGAPMGEWGPSGVDAINGPTRRPATDVSKKEEELERVKQLVVDIERRITVLSAEREKPALTPQPMIYELEGLEFPVVEEEPVETGPVVIQPSGVATAVPAAAEGEEIKVDPSILPGDIDVEKDDSGVIPPKPIVVSTKREFKDVGRLPKELMEEMEEEKKAAGKDFLSGKGMSSFPGDGSEMTIGG 485
            M V F    GGLDR+S APY  TRYLF+DRP S    D E  + +A     R +FGNAYLMEEER +   AES ++ G I  ++F RA+AKS+ Y+ RFFDRV+Q+RF ELNF H +GRAPL+Q E S H+ IFA GGY+AEIDSY D  EY +VFGED  P+ RFRGTY+P + FN  C +QGG+A SDK  P M ++ LAA  P PAY +VDGLPPIPN +HPSKKY+            L  A+++  + Q+EL  AY  L++SR  + PF  M  DM +  LYGR +GNGAV VF G+Y G   GEWG +G + + G +RR A D+  KE  LE+ KQLVVD+ER + ++ AE EKP ++P  +   +   E+  VE E     PVV+                   V+P +L G I V               S  R   D+  L  E   E  E  K       +      FPGDGSEM IGG
Sbjct:   44 MGVRFDYGGGGLDRLSAAPYGYTRYLFQDRPKSTKVCDSEGEVQSAFTSIYRHVFGNAYLMEEEREELAVAESKFKMGEIGMRDFIRAIAKSNAYKSRFFDRVSQYRFFELNFIHLLGRAPLDQTEISAHYGIFAEGGYEAEIDSYIDSQEYSDVFGEDTAPYMRFRGTYSPNSTFNSQCKLQGGWARSDKNLPVMSMSVLAAKAPVPAYQIVDGLPPIPNSEHPSKKYEXXXXXXXXXXXXLATAKSKVLEFQLELTAAYNMLEDSRKFLSPFMNMAADMQLPQLYGRKFGNGAVNVFSGKYLGTGSGEWGVTGAEKVRGRSRRVAMDIGAKEARLEKTKQLVVDLERAVGLIEAEIEKPPMSPAAL---MRIKEYVKVEGEK----PVVVA------------------VEPELLGGKIQV---------------SVVRSLADIAALKPEPEVEKSEGPKVYKPYDANALPKPKFPGDGSEMNIGG 492          
BLAST of Ggra6857.t1 vs. uniprot
Match: A0A5J4YIJ0 (Phycobilisome 31.8 kDa linker polypeptide, phycoerythrin-associated, rod n=2 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YIJ0_PORPP)

HSP 1 Score: 380 bits (977), Expect = 4.620e-123
Identity = 233/496 (46.98%), Postives = 298/496 (60.08%), Query Frame = 0
Query:    2 AVEFQTYSGGLDRVSQA------PYSITRYLFKDRPM-----SLTEEDKEVVIATALRQLFGNAYLMEEERAQFYTAESNYRCGRITAKEFARAVAKSDTYRQRFFDRVTQFRFIELNFKHFMGRAPLNQVEYSKHFKIFAAGGYDAEIDSYFDDPEYDEVFGEDIFPFTRFRGTYAPINQFNRMCTIQGGFAGSDKFKPQMLVTSLAANVPTPAYSVVDGLPPIPNGQHPSKKYDLPPVSLERFINELDIAQARAYQLQIELDQAYAELDNSRDIIDPFKAMVKDMDITPLYGRNYGNGAVKVFPGQYEGAPMGEWGPSGVDAINGPTRRPATDVSKKEEELERVKQLVVDIERRITVLSAEREKPALTPQPMIYELEGLEFPVVEEEPVETGPVVIQPSGVATAVPAAAEGEEIKVDPSILPGDIDVEKDDSGVIPPKPIVVSTKREFKDVGRLPKELMEEMEEEKKAAGKD-FLSGKGMSSFPGDGSEMTIGG 485
            AV F++ SGGLDR S+       P  ITR+LFKDRP+     SL+E D+E  + T  R + GNAY+MEEER +  T ES +  G I+ ++F R VAKS TY++RFF+ V+QFRFIELNFKHFMGRAPL+  E SKH++IFAAGGYDAE+DSYFD  EY +VFG D  P+ RFRGTYAP + FN  C +QGG+A SDK  P M +  L        + +VDGLP IPN +HPS+KY++P VS E+   EL IAQ +A  LQIELD AY  L +SR  + PF AM  DMDI PLYG+N      +VF GQ+ G   G+WG +G D + G +RR A D+  KE +LERVKQLVVD++R + +  AE + PA T     Y+ +    P          PV+ +  G     P     +EI    +I  GD             K I V+  R   D     +E  E+ EEE     KD + + K M  FPGDGSEM +GG
Sbjct:  137 AVRFESPSGGLDRYSRVDPAAPGPNVITRFLFKDRPVRRSDPSLSEVDREATMRTVYRNVMGNAYVMEEERDELATLESQFLVGAISTRDFVRGVAKSATYKKRFFESVSQFRFIELNFKHFMGRAPLDMAEMSKHYEIFAAGGYDAEVDSYFDSEEYLDVFGLDTVPYMRFRGTYAPNSTFNLQCRLQGGWARSDKKLPMMSMLPLNNKAAIMPHQIVDGLPVIPNSEHPSQKYNVPKVSREKLQRELLIAQGKANALQIELDAAYTSLASSRAFLAPFAAMAADMDIRPLYGKN-----PQVFAGQFLGVGAGQWGKTGADTVRGRSRRVAADIGVKEFQLERVKQLVVDLQRALALEDAEADAPA-TSLLQAYQAKVYVKP----------PVIAKKKG-----PEPVNEDEI----TIGQGD-------------KKIKVTVLRNLGDRTEKLREKPEKEEEEGPRTFKDLYETAKPMKGFPGDGSEMNVGG 594          
BLAST of Ggra6857.t1 vs. uniprot
Match: A0A1X6NKA8 (PBS-linker domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NKA8_PORUM)

HSP 1 Score: 201 bits (510), Expect = 1.950e-55
Identity = 136/382 (35.60%), Postives = 201/382 (52.62%), Query Frame = 0
Query:   11 GLDRVSQAPYSITRYLFKD-RPMSLT----EEDKEVVIATALRQLFGNAYLMEEERAQFYTAESNYRCGRITAKEFARAVAKSDTYRQRFFDRVTQFRFIELNFKHFMGRAPLNQVEYSKHFKIFAAGGYDAEIDSYFDDPEYDEVFGEDIFPFTRFRGTYAPINQFNRMCTIQGGFAGSDK---------------FKPQMLVTSLAANVPTPAYSVVDGLP---PIPNGQHPSKKYDLPPVSLE---RFINELDIAQARAYQ--LQIELDQAYAELDNSRDIIDPFKAMVKDMDITPLYGRNYGNGAVKV---FPGQY-EGAPMGEWGPSGVDAINGPTRRPATDVSKKEEELERVKQLVVDIERRITVLSAEREKPALT 360
            GLD  +Q PY+ +RY+    + + +T    EE++E  +    RQ+FGNAY+MEEERA+   AES ++ G +T KE  RA+AKS TYR RFF+  +Q+RFIELNFKH MGR+P +Q E S+H + ++A GY+AEIDSY D  EY  VFG++  PF RFRG Y P + FN+ C +QGG+A SDK                +   L+ S AA  P    +V +  P     PN       Y +P  +L     F+++  +A  R+    LQ   +QA      ++D +  F+ MV DM +    G  Y  G + +   F  Q  + +P+   G              A  VS+ E+ LE  K+ ++ +E+ +   S    +  +T
Sbjct:    6 GLDTATQQPYTFSRYILGPFQGVEVTDLSGEEERENALRATYRQVFGNAYIMEEERAELAIAESQFKLGALTVKELIRAMAKSSTYRARFFEGASQYRFIELNFKHLMGRSPDSQAEISEHVQRYSAAGYEAEIDSYLDSAEYTTVFGDNTVPFLRFRGAYTPCDSFNKQCALQGGWANSDKAMGGAALSGWNGSDGHQESTLIASYAAGKPVNYEAVAENTPLKSTAPNW------YAVPDPALAPTPAFVSQKQVAALRSQVAVLQATYEQALLAKLKAKDPLVGFRNMVSDMPVNDR-GATYSGGDLLLANPFARQLGDDSPLAMGGADAGTYKRYSAAMEADSVSRLEKSLEEAKRELLVLEKALAASSPTGSEDKVT 380          
BLAST of Ggra6857.t1 vs. uniprot
Match: A0A7S0ZGR9 (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZGR9_9RHOD)

HSP 1 Score: 190 bits (482), Expect = 5.040e-51
Identity = 131/380 (34.47%), Postives = 192/380 (50.53%), Query Frame = 0
Query:   10 GGLDRVSQAP----------YSITRYLFKDRPM-----SLTEEDKEVVIATALRQLFGNAYLMEEERAQFYTAESNYRCGRITAKEFARAVAKSDTYRQRFFDRVTQFRFIELNFKHFMGRAPLNQVEYSKHFKIFAAGGYDAEIDSYFDDPEYDEVFGEDIFPFTRFRGTYAPINQFNRMCTIQGGFAGSDKF---------------KPQMLVTSLAANVPTPAYSVVDGLPPI----PNGQHPSKKYDLPPVSLERFINELDIAQARAYQLQIELDQAYAELDNSRDIIDPFKAMVKDMDITPLYGRNYGNGAVKVFPG---QYEGAPMGEWGPSGVDAINGPTRRPATDVSKKEEELERVKQLVVDIERRITVLSA 352
            G +DR+  AP          Y+ +RY+            ++ +DKEV+I  A+RQ+FGNAYLMEEER +   AES ++ G I  K+F RA+AKS  Y+ RF +   Q+RFIELNFKH +GRAP N  E +KH + +   G++A+IDSY DD EYD VFG D  PF RFRG Y P + FNR C +QGG+A SDK                +   L+++ AA  P   YS+V    P+    PN  +      LPP+      ++++  + R  QLQ    +A      S+D ++ +++  K+M       R Y       F G     +  P+   G    D         + +VS+ E E+E  K  +  +E  ++  +A
Sbjct:   40 GVIDRLDSAPADKFEQTKQVYTFSRYILGPHTAIIAKDGMSADDKEVLIRQAIRQVFGNAYLMEEEREELQIAESQFKNGAIPMKDFIRALAKSSAYQTRFLEGAVQYRFIELNFKHLLGRAPDNHEEIAKHMRTYQQFGFEADIDSYLDDGEYDNVFGYDTIPFMRFRGVYTPCDSFNRQCALQGGWANSDKAMGGAALSGYNGADGRQMSTLISTYAAGKPVD-YSLVAANTPLKTTAPNW-YALPNPALPPMPSFVSPSDVNALKVRLNQLQAAYAKATERSQISKDTLEMWRSAAKEMQGM----RGYAPTGESFFGGISQSVDNTPLASKGQKSSDYKRFSYNLYSDEVSRLETEIEETKSTLRVLEAALSKSTA 413          
BLAST of Ggra6857.t1 vs. uniprot
Match: A0A291FEB7 (LRC2 n=1 Tax=Griffithsia pacifica TaxID=35689 RepID=A0A291FEB7_GRIPA)

HSP 1 Score: 188 bits (478), Expect = 1.450e-50
Identity = 116/297 (39.06%), Postives = 167/297 (56.23%), Query Frame = 0
Query:   11 GLDRVSQAPYSITRYLFKDRPMSL-----TEEDKEVVIATALRQLFGNAYLMEEERAQFYTAESNYRCGRITAKEFARAVAKSDTYRQRFFDRVTQFRFIELNFKHFMGRAPLNQVEYSKHFKIFAAGGYDAEIDSYFDDPEYDEVFGEDIFPFTRFRGTYAPINQFNRMCTIQGGFAGSDKFKP------------QMLVTSLAANVP--TPAYSVVDGLPPIPNGQHPSKKYDLPPVS-LERFINELDIAQARAY--QLQIELDQAYAELDNSRDIIDPFKAMVKDMDITPLYGR 285
            GLD V+Q  YS +RY+      S+     +E ++E+ I  A R +FGNAY+MEEE A+     S Y+ G +TAKEF RA+AKS  Y+ RFF+  +Q+RF+ELNF H +GRAP  Q E + H  I+ A G+DAEIDSY D  EYD VFG+   PF RFRG Y P + FN+ C ++GG+A SDK               + +   ++A V   T  Y  V G  P+         Y  P ++    FI+  ++ +ARA   +L+   ++  A+    ++ + PF+AMV+DM   P+  R
Sbjct:   52 GLDTVTQDSYSFSRYVLGPFQPSVLNANSSEYEREIAIRAAYRHVFGNAYIMEEELAEVEVTASQYKLGNLTAKEFIRALAKSSAYKTRFFEGASQYRFVELNFMHLLGRAPDTQEEVATHMNIYHAKGFDAEIDSYIDSEEYDSVFGDYNVPFLRFRGAYTPCDSFNKQCALKGGWANSDKAMGGAALSGYNGSDGRQMCDRISAYVTSDTTDYESVAGNSPLLTTSPNWLAYPDPAIAPTPAFISPQEVREARARVEKLREAYNEEIAKTQARKNAMAPFRAMVEDM--APMLDR 346          
BLAST of Ggra6857.t1 vs. uniprot
Match: A0A2V3ICK5 (Phycobilisome 32.1 kDa linker polypeptide, phycocyanin-associated, rod n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ICK5_9FLOR)

HSP 1 Score: 184 bits (468), Expect = 5.490e-49
Identity = 116/313 (37.06%), Postives = 167/313 (53.35%), Query Frame = 0
Query:    7 TYSGGLDRVSQAPYSITRYL---FKDRPMS--LTEEDKEVVIATALRQLFGNAYLMEEERAQFYTAESNYRCGRITAKEFARAVAKSDTYRQRFFDRVTQFRFIELNFKHFMGRAPLNQVEYSKHFKIFAAGGYDAEIDSYFDDPEYDEVFGEDIFPFTRFRGTYAPINQFNRMCTIQGGFAGSDKFKPQML---------------VTSLAANVPTPAYSVVDGLP---PIPNGQHPSKKYDLPPVSLERFINELDIAQARAYQ-----LQIELD-QAYAELDNSRDIIDPFKAMVKDMDITPLYGRNYGNG 290
            T   GLD V+   Y+ +R++   F+ + ++   +E D+E+ +  A R +FGNAYLMEEERA+    ES Y+ G I+A+EF R +AKS  Y++RF D  +QFRFIELNF H +GRAP  + + S+H  I+A  G DA+IDSY D  EY  VFG+D  PF RFRG Y P   FN+ C ++GG+A SDK                     ++S  +  PTP   V +  P     PN       Y  P  ++E     + +A+ RA +     LQ + D +   +L+  RD +  ++ M+ DM      G  Y  G
Sbjct:   45 TILSGLDTVNTDSYTFSRFILGPFQPKVLNPGSSEGDREIHLRAAYRHIFGNAYLMEEERAELAVPESQYKAGNISAREFVRCLAKSSAYKKRFLDGASQFRFIELNFMHLLGRAPDTRKDISEHLAIYATQGVDADIDSYIDSEEYSSVFGDDTIPFLRFRGAYTPCESFNKQCALKGGWANSDKAMGGAALSGYNGADGKQFCQNISSYISAEPTPYEQVAENTPLKSTAPNW------YACPNPAVEPQPGFVSVAEVRALEETVAALQSQYDAELEKKLNTPRDPLAFYRGMISDMGAMLDRGPAYSGG 351          
The following BLAST results are available for this feature:
BLAST of Ggra6857.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IP861.050e-24974.54Phycobilisome 32.1 kDa linker polypeptide, phycocy... [more]
R7QQQ69.730e-20564.21PBS-linker domain-containing protein n=1 Tax=Chond... [more]
A0A291FEB82.250e-17658.23LRC3 n=1 Tax=Griffithsia pacifica TaxID=35689 RepI... [more]
A0A1X6NJY81.690e-13748.38PBS-linker domain-containing protein n=1 Tax=Porph... [more]
A0A7S0ZG353.630e-12545.40Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A5J4YIJ04.620e-12346.98Phycobilisome 31.8 kDa linker polypeptide, phycoer... [more]
A0A1X6NKA81.950e-5535.60PBS-linker domain-containing protein n=1 Tax=Porph... [more]
A0A7S0ZGR95.040e-5134.47Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A291FEB71.450e-5039.06LRC2 n=1 Tax=Griffithsia pacifica TaxID=35689 RepI... [more]
A0A2V3ICK55.490e-4937.06Phycobilisome 32.1 kDa linker polypeptide, phycocy... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 326..353
NoneNo IPR availableCOILSCoilCoilcoord: 232..259
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 453..485
NoneNo IPR availablePANTHERPTHR34011:SF5PHYCOBILISOME 32.1 KDA LINKER POLYPEPTIDE, PHYCOCYANIN-ASSOCIATED, ROD 2coord: 35..206
NoneNo IPR availablePANTHERPTHR34011PHYCOBILISOME 32.1 KDA LINKER POLYPEPTIDE, PHYCOCYANIN-ASSOCIATED, ROD 2-RELATEDcoord: 35..206
IPR038255Phycobilisome linker domain superfamilyGENE3D1.10.3130.20Phycobilisome linker domaincoord: 30..168
e-value: 2.7E-37
score: 129.5
IPR001297Phycobilisome linker domainPFAMPF00427PBS_linker_polycoord: 35..161
e-value: 2.1E-37
score: 128.0
IPR001297Phycobilisome linker domainPROSITEPS51445PBS_LINKERcoord: 6..187
score: 27.60511

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:688205..689662 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6857.t1Ggra6857.t1Gracilaria gracilis GNS1m malemRNAtig00000056_pilon 688205..689662 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6857.t1 ID=Ggra6857.t1|Name=Ggra6857.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=486bp
MAVEFQTYSGGLDRVSQAPYSITRYLFKDRPMSLTEEDKEVVIATALRQL
FGNAYLMEEERAQFYTAESNYRCGRITAKEFARAVAKSDTYRQRFFDRVT
QFRFIELNFKHFMGRAPLNQVEYSKHFKIFAAGGYDAEIDSYFDDPEYDE
VFGEDIFPFTRFRGTYAPINQFNRMCTIQGGFAGSDKFKPQMLVTSLAAN
VPTPAYSVVDGLPPIPNGQHPSKKYDLPPVSLERFINELDIAQARAYQLQ
IELDQAYAELDNSRDIIDPFKAMVKDMDITPLYGRNYGNGAVKVFPGQYE
GAPMGEWGPSGVDAINGPTRRPATDVSKKEEELERVKQLVVDIERRITVL
SAEREKPALTPQPMIYELEGLEFPVVEEEPVETGPVVIQPSGVATAVPAA
AEGEEIKVDPSILPGDIDVEKDDSGVIPPKPIVVSTKREFKDVGRLPKEL
MEEMEEEKKAAGKDFLSGKGMSSFPGDGSEMTIGG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038255PBS_linker_sf
IPR001297PBS_linker_dom