Ggra6833.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6833.t1
Unique NameGgra6833.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length255
Homology
BLAST of Ggra6833.t1 vs. uniprot
Match: A0A2V3IPX2 (Polyadenylate-binding protein 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPX2_9FLOR)

HSP 1 Score: 279 bits (713), Expect = 1.900e-91
Identity = 149/201 (74.13%), Postives = 169/201 (84.08%), Query Frame = 0
Query:   54 EDDKPATDLDSELEAMKKRLLEMEQESFPLNAENSGDQDNDAADGAKPAPATAASESPVDHSVARGGIVADDAVADADSRSIYVGNVDYSATVEELSKYFEECGTINRVTIVTHRPTGTPKGYAYVEFKDQHAVQNALILNEAMFKGRQLKITAKRTNVPGMTRGGRGRGQAYRARRASFHYGRRPRGRXXXXXXXRWVPY 254
            ++DKP TDLD+ELEAMKKRLLEMEQESFP+NAEN+ D +++    A+ AP  AA+    D +  R  I  DDAVADAD+RSIYVGNVDYSATVEELSKYFEECGTINRVTI+TH+PTGTPKGYAYVEFKDQHAVQNALILNEAMFKGRQLKITAKRTN+PGMTRG RGRG+ +R  R+++HYGRRPRGR       RWVPY
Sbjct:   57 DEDKPGTDLDTELEAMKKRLLEMEQESFPVNAENNADPNSEGGPTAQSAPKNAATARAADVNQPRSPIGGDDAVADADARSIYVGNVDYSATVEELSKYFEECGTINRVTIITHKPTGTPKGYAYVEFKDQHAVQNALILNEAMFKGRQLKITAKRTNLPGMTRG-RGRGRFFRGGRSAYHYGRRPRGRPRG----RWVPY 252          
BLAST of Ggra6833.t1 vs. uniprot
Match: polyadenylate-binding protein 2-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D9E59 (polyadenylate-binding protein 2-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D9E59)

HSP 1 Score: 160 bits (406), Expect = 2.960e-45
Identity = 103/200 (51.50%), Postives = 128/200 (64.00%), Query Frame = 0
Query:   61 DLDSELEAMKKRLLEMEQESFPLNAENSGDQDNDAADGAKPAPATAASESPVDHSVARGGIVADDAVADADSRSIYVGNVDYSATVEELSKYFEECGTINRVTIVTHRPTGTPKGYAYVEFKDQHAVQNALILNEAMFKGRQLKITAKRTNVPGMT----RGGRGRGQ-AYRARRASFHYGR-RPRGRXXXXXXXRWVPY 254
            D+D+ELEAMKKRL EME E+  + A  +G  D            T+A+    D      G       A++D+RSIYVGNVDY+AT EEL  +F +CGTINRVTI+ ++ TGTPKG+AY+EF DQ AV+NA+ILNE+ F+GR LK+T KRTNVPG+     RGGRGRG   YR R     +GR RPRGR        WVPY
Sbjct:   61 DVDAELEAMKKRLKEMEDEANAVKAAGAGGTDG-----------TSAATGRADRMGEDYGASLIGPSAESDARSIYVGNVDYAATPEELQAHFADCGTINRVTIMCNKATGTPKGFAYIEFVDQDAVKNAVILNESPFRGRALKVTPKRTNVPGLAVRGGRGGRGRGVFGYRGR----GFGRGRPRGR--------WVPY 237          
BLAST of Ggra6833.t1 vs. uniprot
Match: A0A5C3EYE1 (Related to poly(A) binding protein II n=1 Tax=Pseudozyma flocculosa TaxID=84751 RepID=A0A5C3EYE1_9BASI)

HSP 1 Score: 140 bits (352), Expect = 1.720e-37
Identity = 85/175 (48.57%), Postives = 108/175 (61.71%), Query Frame = 0
Query:   59 ATDLDSELEAMKKRLLEMEQESFPLNA--ENSGDQDNDAADGAKPAPATAASESPVDHSVARGGIVADDAVADADSRSIYVGNVDYSATVEELSKYFEECGTINRVTIVTHRPTGTPKGYAYVEFKDQHAVQNALILNEAMFKGRQLKITAKRTNVPGMTRGGRGRGQAYRARRA 231
            A D ++E+EAMKKR+ EME E+  L    E +G     AA GA   P     E                   + DSRS+YVGNVDY AT EE+ ++F+ CGTINRVTI+  + TG PKGYAYVEF D   V NA++LNE++F+GR +K+TAKRTN+PGM   GRG  + YR  RA
Sbjct:   49 AMDEEAEIEAMKKRVAEMEAEAAKLREMQEAAG-----AAAGAGIHPTEEEKE-------------------EVDSRSVYVGNVDYGATPEEIQQHFQSCGTINRVTILCDKFTGHPKGYAYVEFADPSLVANAMVLNESLFRGRLIKVTAKRTNLPGMAARGRGXXRGYRPYRA 199          
BLAST of Ggra6833.t1 vs. uniprot
Match: A0A7S0ZAS5 (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZAS5_9RHOD)

HSP 1 Score: 139 bits (349), Expect = 5.260e-37
Identity = 81/169 (47.93%), Postives = 111/169 (65.68%), Query Frame = 0
Query:   62 LDSELEAMKKRLLEMEQESFPLNAENSGDQDNDAADGAKPAPATAASESPVDHSVARGGIVADDAVADADSRSIYVGNVDYSATVEELSKYFEECGTINRVTIVTHRPTGTPKGYAYVEFKDQHAVQNALILNEAMFKGRQLKITAKRTNVPGMTR-GGRGRGQAYRAR 229
            +D+EL AMK+RL EME E+  L+   +G   ND   G     +T  ++               D+    D++S+YVGNVDY AT EEL  +F++CGT+NRVTI+ ++ TG PKG+AY+EF D+ AV+NA ILN++MF+GR LK+T KRTNVPGM    GRGRG++ R R
Sbjct:   52 VDAELAAMKQRLKEMEMEAMKLSELQNGSGANDGNGG----ESTKLNQ---------------DSQETIDAKSVYVGNVDYGATPEELQIHFQDCGTVNRVTILCNKFTGHPKGFAYIEFSDEDAVKNATILNDSMFRGRALKVTPKRTNVPGMGDFRGRGRGRSSRGR 201          
BLAST of Ggra6833.t1 vs. uniprot
Match: A0A4Q1BG79 (Polyadenylate-binding protein 2 n=1 Tax=Tremella mesenterica TaxID=5217 RepID=A0A4Q1BG79_TREME)

HSP 1 Score: 137 bits (344), Expect = 1.330e-36
Identity = 82/168 (48.81%), Postives = 107/168 (63.69%), Query Frame = 0
Query:   62 LDSELEAMKKRLLEMEQESFPLNAENSGDQDNDAADGAKPAPATA--ASESPVDHSVARGGIVADDAVADADSRSIYVGNVDYSATVEELSKYFEECGTINRVTIVTHRPTGTPKGYAYVEFKDQHAVQNALILNEAMFKGRQLKITAKRTNVPGMTRGGRGRGQAYR 227
            +D EL  M+ RL +ME E   +           AA G+KP+PA      E   D S+       +DA A  D+RS+Y+GNVDY AT EE+  +F+ CGTINRVTI+  + TG PKGYAYVEF +   VQNAL+LN++MF+GR L +  KRTN+PGM RG RGRG+ +R
Sbjct:   20 VDEELSLMQARLAQMEAEKNAI-----------AAGGSKPSPAPKIQGEEGEGDASMED-----EDAPAAVDARSVYIGNVDYGATPEEIQAHFQACGTINRVTILCDKFTGHPKGYAYVEFAEPSIVQNALVLNDSMFRGRLLSVREKRTNIPGMNRG-RGRGRGFR 170          
BLAST of Ggra6833.t1 vs. uniprot
Match: A0A1A6A6U5 (Polyadenylate-binding protein 2 n=4 Tax=Kwoniella TaxID=490731 RepID=A0A1A6A6U5_9TREE)

HSP 1 Score: 137 bits (346), Expect = 2.900e-36
Identity = 78/162 (48.15%), Postives = 101/162 (62.35%), Query Frame = 0
Query:   62 LDSELEAMKKRLLEMEQESFPLNAENSGDQDNDAADGAKPAPATAASESPVDHSVARGGIVADDAVADADSRSIYVGNVDYSATVEELSKYFEECGTINRVTIVTHRPTGTPKGYAYVEFKDQHAVQNALILNEAMFKGRQLKITAKRTNVPGMTRGGRGRG 223
            +D EL  M+ RL EME+E   L   N G    + +     A  T A E+   H      +  +DA A  DSRS+Y+GNVDY AT EE+  +F+ CGTINRVTI+  + TG PKGYAYVEF +   VQNA++LNE+MF+GR + +  KRTN+PGM    RGRG
Sbjct:   18 VDEELRLMQARLAEMEEEKNAL-VSNRGSSTPNPSGANGTATGTGAGEASETHEGNEASMEDEDAPAAVDSRSVYIGNVDYGATPEEIQAHFQACGTINRVTILCDKFTGHPKGYAYVEFAEPSIVQNAVVLNESMFRGRLITVKEKRTNLPGMNMTNRGRG 178          
BLAST of Ggra6833.t1 vs. uniprot
Match: M2XI03 (RNA-binding protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XI03_GALSU)

HSP 1 Score: 135 bits (339), Expect = 1.050e-35
Identity = 78/166 (46.99%), Postives = 102/166 (61.45%), Query Frame = 0
Query:   61 DLDSELEAMKKRLLEMEQESFPLNAENSGDQDNDAADGAKPAPATAASESPVDHSVARGGIVADDAVADADSRSIYVGNVDYSATVEELSKYFEECGTINRVTIVTHRPTGTPKGYAYVEFKDQHAVQNALILNEAMFKGRQLKITAKRTNVPGMTRGGRGRGQAY 226
            D+D+ELEAMKKRL EME+E+  L                K     +ASE P    V              D RS+YVGNVDY +T EEL  +F+ECGTINRVTI+  + TG PKG+AY+EF  +    NA+ILNE++F+GR LK++ KRTNVPG++   RGRG+ +
Sbjct:   30 DVDAELEAMKKRLQEMEEEANRL----------------KEVQEQSASEVPSSEEV--------------DRRSVYVGNVDYGSTPEELQAHFKECGTINRVTILCDKFTGHPKGFAYIEFATEEGANNAVILNESLFRGRNLKVSIKRTNVPGISTTDRGRGRGF 165          
BLAST of Ggra6833.t1 vs. uniprot
Match: A0A3G2S145 (Polyadenylate-binding protein 2 n=1 Tax=Malassezia restricta CBS 7877 TaxID=425264 RepID=A0A3G2S145_9BASI)

HSP 1 Score: 135 bits (339), Expect = 1.500e-35
Identity = 76/160 (47.50%), Postives = 101/160 (63.12%), Query Frame = 0
Query:   63 DSELEAMKKRLLEMEQESFPLNAENSGDQDNDAADGAKPAPATAASESPVDHSVARGGIVADDAVADADSRSIYVGNVDYSATVEELSKYFEECGTINRVTIVTHRPTGTPKGYAYVEFKDQHAVQNALILNEAMFKGRQLKITAKRTNVPGMTRGGRGR 222
            D++LEAMK+R+ EME E+  L   N                    +E  +  S +      D+   + DSRSIYVGNVDY AT EE+ ++F+ CGTINRVTI+  + TG PKG+AYVEF D + V+NA +LNE++F+GR LK+T KRTNVPG+   GRGR
Sbjct:   41 DADLEAMKQRVAEMEAEAAKLREMNE------------------TAEQDIQGSASVAAHPTDEEKMEVDSRSIYVGNVDYGATPEEIQQHFQSCGTINRVTILCDKFTGHPKGFAYVEFADANFVENAAVLNESLFRGRLLKVTPKRTNVPGVGFRGRGR 182          
BLAST of Ggra6833.t1 vs. uniprot
Match: A8PUV0 (RRM domain-containing protein n=1 Tax=Malassezia globosa (strain ATCC MYA-4612 / CBS 7966) TaxID=425265 RepID=A8PUV0_MALGO)

HSP 1 Score: 135 bits (339), Expect = 1.680e-35
Identity = 77/160 (48.12%), Postives = 104/160 (65.00%), Query Frame = 0
Query:   63 DSELEAMKKRLLEMEQESFPLNAENSGDQDNDAADGAKPAPATAASESPVDHSVARGGIVADDAVADADSRSIYVGNVDYSATVEELSKYFEECGTINRVTIVTHRPTGTPKGYAYVEFKDQHAVQNALILNEAMFKGRQLKITAKRTNVPGMTRGGRGR 222
            D+++EAMK+R+ EME E+  L       + N+ A+      A+AAS    +  +            + D RSIYVGNVDY AT EE+ ++F+ CGTINRVTI+  + TG PKG+AYVEF D   V+NA +LNE++F+GR LK+T KRTNVPG+T  GRGR
Sbjct:   41 DADIEAMKRRVAEMEAEAAKLR------EMNEVAERDISGTASAASHPSEEEKM------------EVDGRSIYVGNVDYGATPEEIQQHFQSCGTINRVTILCDKFTGHPKGFAYVEFADSSFVENAAVLNESLFRGRLLKVTPKRTNVPGITTRGRGR 182          
BLAST of Ggra6833.t1 vs. uniprot
Match: A0A066WB31 (RNA-binding domain-containing protein n=1 Tax=Tilletiaria anomala (strain ATCC 24038 / CBS 436.72 / UBC 951) TaxID=1037660 RepID=A0A066WB31_TILAU)

HSP 1 Score: 132 bits (333), Expect = 3.820e-35
Identity = 77/161 (47.83%), Postives = 98/161 (60.87%), Query Frame = 0
Query:   61 DLDSELEAMKKRLLEMEQESFPLNAENS-GDQDNDAADGAKPAPATAASESPVDHSVARGGIVADDAVADADSRSIYVGNVDYSATVEELSKYFEECGTINRVTIVTHRPTGTPKGYAYVEFKDQHAVQNALILNEAMFKGRQLKITAKRTNVPGMTRGGR 220
            D D+E+EAMK R+ EM           +  +  N   D A P+ A   SE               D   + D+RSIYVGNVDYSAT EE+ ++F  CGTINRVTI+  + TG PKGYAYVEF D   V NA+++NE++F+GR +K+TAKRTNVPGM   GR
Sbjct:    2 DDDAEIEAMKARMAEMXXXXXXXXXXXAQSEAANGTGDSAGPSTAVGPSE---------------DEKEEVDARSIYVGNVDYSATPEEIQQHFSSCGTINRVTILCDKFTGHPKGYAYVEFSDSSLVANAMLMNESLFRGRLIKVTAKRTNVPGMAARGR 147          
The following BLAST results are available for this feature:
BLAST of Ggra6833.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IPX21.900e-9174.13Polyadenylate-binding protein 1 n=1 Tax=Gracilario... [more]
polyadenylate-binding protein 2-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D9E592.960e-4551.50polyadenylate-binding protein 2-like n=1 Tax=Merce... [more]
A0A5C3EYE11.720e-3748.57Related to poly(A) binding protein II n=1 Tax=Pseu... [more]
A0A7S0ZAS55.260e-3747.93Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A4Q1BG791.330e-3648.81Polyadenylate-binding protein 2 n=1 Tax=Tremella m... [more]
A0A1A6A6U52.900e-3648.15Polyadenylate-binding protein 2 n=4 Tax=Kwoniella ... [more]
M2XI031.050e-3546.99RNA-binding protein n=1 Tax=Galdieria sulphuraria ... [more]
A0A3G2S1451.500e-3547.50Polyadenylate-binding protein 2 n=1 Tax=Malassezia... [more]
A8PUV01.680e-3548.13RRM domain-containing protein n=1 Tax=Malassezia g... [more]
A0A066WB313.820e-3547.83RNA-binding domain-containing protein n=1 Tax=Till... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 59..79
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..118
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..55
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..77
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 235..254
NoneNo IPR availablePANTHERPTHR23236EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4Hcoord: 39..242
NoneNo IPR availablePANTHERPTHR23236:SF12EUKARYOTIC INITIATION FACTOR 4B-RELATEDcoord: 39..242
NoneNo IPR availableCDDcd12306RRM_II_PABPscoord: 134..206
e-value: 8.511E-40
score: 130.489
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 134..206
e-value: 3.0E-22
score: 89.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 135..204
e-value: 7.5E-18
score: 64.1
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 133..210
score: 16.909462
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 118..251
e-value: 1.1E-27
score: 98.8
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 126..238

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:633776..634722 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6833.t1Ggra6833.t1Gracilaria gracilis GNS1m malemRNAtig00000056_pilon 633776..634722 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6833.t1 ID=Ggra6833.t1|Name=Ggra6833.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=255bp
MATNEGGAVPETNVPEAEATIANAKESNPDEQNGNDHQEQKADPTDGNPD
ETPEDDKPATDLDSELEAMKKRLLEMEQESFPLNAENSGDQDNDAADGAK
PAPATAASESPVDHSVARGGIVADDAVADADSRSIYVGNVDYSATVEELS
KYFEECGTINRVTIVTHRPTGTPKGYAYVEFKDQHAVQNALILNEAMFKG
RQLKITAKRTNVPGMTRGGRGRGQAYRARRASFHYGRRPRGRPRGRPRGR
WVPY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf