Ggra6676.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6676.t1
Unique NameGgra6676.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length404
Homology
BLAST of Ggra6676.t1 vs. uniprot
Match: A0A2V3IX32 (RNA polymerase sigma factor SigA n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IX32_9FLOR)

HSP 1 Score: 536 bits (1382), Expect = 1.710e-188
Identity = 291/403 (72.21%), Postives = 324/403 (80.40%), Query Frame = 0
Query:    1 MSASAFAPAPLPLRACTQRRSRALSHAPQMVVAAPQASRSASXXXXXXXXXAPAR-PHSTSVDDNHLYSYLRDIGTISLLSDEEVAKCSAHIANLSRWELVKGELDAVAARHTQKRRLLTSRYRRQAKPVPAATVSIGDWADALDMDHAAFAAALREARFYKDRLVAANLRLVVSIAKKYRGNGVAFTDLIQEGSLGLIRAAEKFDAQKGFKFTTYASWWIRQAVQRAVSDSSRTIRLPTHVADAAKKARRLANQFEREHNQRPSTEELAQMMGIRPDRLSFILSKAEQTDTLSLDCPLFPGSNCSKPVSLGDCLAANGSSPEEEVSRGLLREDVENVLLMLSPREREVLRMRYGFDDGHTKNFDEIGKMYSVPASRIRQIEARAMRKLRHPNFHRCLTEWTQ 402
            + A+A AP P P+   T RR RA    P+MVVAAP                 PAR P   +  D  L SYLRDIG ISLLSD EV  C+ +IA L RWE V+  L A AA+ TQKRRLLTSRYRR AKP+P A+VS+ DWA AL M    FA+ALR AR +KDRLVAANLRLVVSIAKKY+G+GV  +DLIQEGSLGLIRAAEKFDA KGFKFTTYASWWIRQAVQRAV+DSSR+IRLPTHVADAAKKARRL++QFER+HN+ P+  ELA MMG++ +RLSFIL KAEQTDTLSLDCP+FP S  SK VSLG+CL A G+SPEEEVS+GLLREDVENVLLMLSPREREVLRMRYGFDDGHTKNFDEIG+MYSVPASRIRQIEARAMRKLRHPNFHRCLT+W Q
Sbjct:   12 LPATAPAPHPPPI---TPRRERA----PRMVVAAPA--------------KPPARMPSRPATSDTALISYLRDIGAISLLSDAEVRTCARYIAELCRWERVRDRLRAEAAQRTQKRRLLTSRYRRHAKPIPPASVSLSDWAAALGMQPNVFASALRHARVHKDRLVAANLRLVVSIAKKYQGSGVTLSDLIQEGSLGLIRAAEKFDAHKGFKFTTYASWWIRQAVQRAVADSSRSIRLPTHVADAAKKARRLSSQFERDHNRTPAVHELADMMGMKAERLSFILHKAEQTDTLSLDCPMFPASTSSKMVSLGECLPAAGTSPEEEVSKGLLREDVENVLLMLSPREREVLRMRYGFDDGHTKNFDEIGRMYSVPASRIRQIEARAMRKLRHPNFHRCLTDWKQ 393          
BLAST of Ggra6676.t1 vs. uniprot
Match: R7QQE4 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QQE4_CHOCR)

HSP 1 Score: 385 bits (990), Expect = 1.490e-128
Identity = 217/393 (55.22%), Postives = 271/393 (68.96%), Query Frame = 0
Query:   19 RRSRALSHAPQMVVA-APQASRSASXXXXXXXXXAPARPHSTSVDDNHLYSYLRDIGTISLLSDEEVAKCSAHIANLSRWELVKGELDAVAARHTQKRRL-----LTSRYRRQAKPVPAATV---SIGDWADALDMDHAAFAAALREARFYKDRLVAANLRLVVSIAKKYRGNGVAFTDLIQEGSLGLIRAAEKFDAQKGFKFTTYASWWIRQAVQRAVSDSSRTIRLPTHVADAAKKARRLANQFEREHNQRPSTEELAQMMGIRPDRLSFILSKAEQTDTLSLDCPLFPGSNCS--KPVSLGDCLAANGSSPEEEVSRGLLREDVENVLLMLSPREREVLRMRYGFDDGHTKNFDEIGKMYSVPASRIRQIEARAMRKLRHPNFHRCLTEW 400
            RR+  +  AP+ + + AP +S+ AS          P     + + D  L +YL++IG++ LL   EV +C+ H+  L  WE +K ELDA                +++RY R  K   +  V   S+ +WA A D D   F A L  AR YKDRLV ANLRLVVSIAKKY  NG++  DLIQEGSLGLIR AEKFD  KGF+F TYASWWIRQA+QRA+SDSSR IRLPTHV D AKKA+R+   FERE+N+  +  ELA+M+ I+ +RLSFIL+K  +TDT+SLD PLF G+N    K VSLGD +    +SPEE VS GLLR+D+ENVLLML+P+EREVLRMRYGFDDG +KNF+EIG +Y VP +RIRQIEARA+RKLRHPNFHRCL +W
Sbjct:   37 RRTSMVLAAPKPITSVAPASSKQASPVRR------PFNDGRSDLSDGGLLAYLKEIGSVDLLEGHEVVECARHVRLLLHWEGIKRELDAAPVPKEGGEAEPCDVPISARYSRATKDRDSPAVRSASLQEWAAACDQDPHQFEADLNRARMYKDRLVRANLRLVVSIAKKYSNNGISLADLIQEGSLGLIRGAEKFDHTKGFRFATYASWWIRQAIQRAISDSSRVIRLPTHVNDIAKKAKRIRRDFERENNRPLTNSELARMLEIKEERLSFILNKTLETDTVSLDVPLF-GNNFDHGKSVSLGDMIENPTASPEEAVSAGLLRDDIENVLLMLTPKEREVLRMRYGFDDGKSKNFEEIGAIYCVPPNRIRQIEARAIRKLRHPNFHRCLIDW 422          
BLAST of Ggra6676.t1 vs. uniprot
Match: A0A1X6PF57 (RNA_pol_sigma70 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PF57_PORUM)

HSP 1 Score: 312 bits (800), Expect = 6.750e-100
Identity = 199/398 (50.00%), Postives = 255/398 (64.07%), Query Frame = 0
Query:   10 PLPLRACTQRRSRALSHAP-QMVVAAPQASRSASXXXXXXXXXAPARP----HSTSVDDNHLYSYLRDIGTISLLSDEEVAKCSAHIANLSRWELVKGELDAVAARHTQKRRLLTSRYRRQAKPVPAATVSIGDWADALDMDHAAFAAALREARFYKDRLVAANLRLVVSIAKKYRGNGVAFTDLIQEGSLGLIRAAEKFDAQKGFKFTTYASWWIRQAVQRAVSDSSRTIRLPTHVADAAKKARRLANQFEREHNQRPSTEELAQMMGIRPDRLSFILSKAEQTDTLSLDCPLFPGSN--CSKPVSLGDCLAANGSSPEEEVSRGLLREDVENVLLMLSPREREVLRMRYGFDDGHTKNFDEIGKMYSVPASRIRQIEARAMRKLRHPNFHRCLTEW 400
            PLP+R      S+  S AP +MV AA        XXXXXXXXX+P RP    +   V D  L +YL++IG ++LL DEEV   S  +  L  WE VK   D VA +H +                     SI +WA  LDM    FA  L  AR  KDRLV+ANLRLVVSIAK+YR  G + +DLIQEGSLGLIR AEK+D  KG++F TYASWWIRQA+QRA++D++RTIRLP HV   A KA R      +E  + PS EELA+ +G+ P RL FILSKA +T ++SL+ P+F G++   +   +LGD L   G SPEE V+  LLR+D++N+LLMLSPRER+V+R+RYGFDDG  K  +EI +MY VP SRIRQ+E RA+R+L+  NF   L ++
Sbjct:   52 PLPVRT-----SQVTSGAPVRMVEAATGGGVXXXXXXXXXXXXSPGRPSGFGYRADVGDASLMAYLKEIGGVALLRDEEVVATSQLVTLLLAWEDVKS--DFVATQHREP--------------------SIAEWAARLDMAPEVFARDLARARHAKDRLVSANLRLVVSIAKRYRNRGCSLSDLIQEGSLGLIRGAEKYDHTKGYRFATYASWWIRQAIQRALADTTRTIRLPVHVNTVATKASRTRQLLSQELGREPSEEELAERLGVTPARLDFILSKAVETSSVSLETPMFGGNSNGAASHTTLGDLLENKGVSPEEAVTAELLRDDLDNMLLMLSPRERDVMRLRYGFDDGKPKGMEEIARMYQVPTSRIRQMETRAIRRLKQ-NFCHVLRDY 421          
BLAST of Ggra6676.t1 vs. uniprot
Match: A0A2V3IWX5 (RNA polymerase sigma factor SigA n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IWX5_9FLOR)

HSP 1 Score: 281 bits (720), Expect = 9.000e-86
Identity = 161/347 (46.40%), Postives = 211/347 (60.81%), Query Frame = 0
Query:   54 ARPHSTSVDDNHLYSYLRDIGTISLLSDEEVAKCSAHIANLSRWELVKGELDAVAARHTQKRRLLTSRYRRQAKPVPAATVSIGDWADALDMDHAAFAAALREARFYKDRLVAANLRLVVSIAKKYRGNGVAFTDLIQEGSLGLIRAAEKFDAQKGFKFTTYASWWIRQAVQRAVSDSSRTIRLPTHVADAAKKARRLANQFEREHNQRPSTEELAQMMGIRPDRLSFILSKAEQTDTLSLDCPLFPGSNCSKPVSLGDCLAANGSSPEEEVSRGLLREDVENVLLMLSPREREVLRMRYGFDDGHTKNFDEIGKMYSVPASRIRQIEARAMRKLRHPNFHRCLTEW 400
            A+P +TS +D  + SYLR+IG + LL  ++    +  I+ L   E +     ++  RH                       SI +WADA  MDH  F   LR+    K+ +VAANLRLVVSIAKKY   G+ F DLIQEGS+GLIR AEKFD  KGFKF+TYA+WWIRQA+ RA++D SR IRLP HV D     R+   Q   E N+ PS  E+A+ M +  ++L F+   +  T  LSL+ P+   S  S   +LG  +  NG +PEE   + LLRED+ENVL  LSPRER+V+RMRYGFDDG  K  +EIG +++V   RIRQIEA+A+RKLRHP  +  L E+
Sbjct:  279 AQPKTTSANDT-IRSYLREIGEVKLLDADKEITLARQISKLLALERISARFKSINGRHP----------------------SIEEWADAASMDHPTFRQVLRDGLRAKEHMVAANLRLVVSIAKKYLNRGLTFQDLIQEGSIGLIRGAEKFDGNKGFKFSTYATWWIRQAITRAIADHSRPIRLPVHVNDTISAIRKTTKQLFSELNRPPSESEIAERMRLSVEKLRFLTRSSRST--LSLETPIGRDSRDSA-ATLGSFIEWNGDTPEEATVKSLLREDIENVLNTLSPRERDVVRMRYGFDDGKMKTLEEIGTIFAVTRERIRQIEAKALRKLRHPTRNAVLREY 599          
BLAST of Ggra6676.t1 vs. uniprot
Match: B4WPM0 (RNA polymerase sigma factor SigA n=2 Tax=Cyanobacteria TaxID=1117 RepID=B4WPM0_SYNS7)

HSP 1 Score: 271 bits (692), Expect = 6.100e-84
Identity = 153/332 (46.08%), Postives = 215/332 (64.76%), Query Frame = 0
Query:   69 YLRDIGTISLLSDEEVAKCSAHIANLSRWELVKGELDAVAARHTQKRRLLTSRYRRQAKPVPAATVSIGDWADALDMDHAAFAAALREARFYKDRLVAANLRLVVSIAKKYRGNGVAFTDLIQEGSLGLIRAAEKFDAQKGFKFTTYASWWIRQAVQRAVSDSSRTIRLPTHVADAAKKARRLANQFEREHNQRPSTEELAQMMGIRPDRLSFILSKAEQTDTLSLDCPLFPGSNCSKPVSLGDCLAANGSSPEEEVSRGLLREDVENVLLMLSPREREVLRMRYGFDDGHTKNFDEIGKMYSVPASRIRQIEARAMRKLRHPNFHRCLTEW 400
            YL++IG I LL  EE  + +  IA+L   E ++ E+D                 +   +P  A      DWA+A+DM   AF   L + R  KD++V +NLRLVVSIAKKY   G++F DLIQEGSLGLIRAAEKFD +KG+KF+TYA+WWIRQA+ RA++D SRTIRLP H+ +   + ++      +E  ++P+ EE+A  M +  ++L FI   A+    +SL+ P+       +   LGD + ++G +PE+EVS+ LLRED+E+VL  LSPRER+VLR+RYG DDG  K  +EIG++++V   RIRQIEA+A+RKLRHPN +  L E+
Sbjct:   99 YLQEIGRIRLLRAEEEIELARKIADLLELERIRDEIDD----------------QLDDEPTDA------DWANAVDMPLPAFRRRLYQGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPTEEEIATRMEMTIEKLRFIAKSAQLP--ISLETPI----GKEEDSRLGDFIESDGETPEDEVSKSLLREDLESVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEY 402          
BLAST of Ggra6676.t1 vs. uniprot
Match: A0A8J7DS04 (RNA polymerase sigma factor RpoD n=1 Tax=Romeria aff. gracilis LEGE 07310 TaxID=915328 RepID=A0A8J7DS04_9CYAN)

HSP 1 Score: 270 bits (689), Expect = 6.790e-84
Identity = 156/353 (44.19%), Postives = 222/353 (62.89%), Query Frame = 0
Query:   53 PARPHSTSVDDNH-----LYSYLRDIGTISLLSDEEVAKCSAHIANLSRWELVKGELDAVAARHTQKRRLLTSRYRRQAKPVPAATVSIGDWADALDMDHAAFAAALREARFYKDRLVAANLRLVVSIAKKYRGNGVAFTDLIQEGSLGLIRAAEKFDAQKGFKFTTYASWWIRQAVQRAVSDSSRTIRLPTHVADAAKKARRLANQFEREHNQRPSTEELAQMMGIRPDRLSFILSKAEQTDTLSLDCPLFPGSNCSKPVSLGDCLAANGSSPEEEVSRGLLREDVENVLLMLSPREREVLRMRYGFDDGHTKNFDEIGKMYSVPASRIRQIEARAMRKLRHPNFHRCLTEW 400
            PAR  +T     H     +  YL++IG I LL  EE  + +  IA+L   E ++ ++                  + + +P  A      DWA+A+DM  AAF   L   R  KD++V +NLRLVVSIAKKY   G++F DLIQEGSLGLIRAAEKFD +KG+KF+TYA+WWIRQA+ RA++D SRTIRLP H+ +   + ++      +E  ++P+ EE+A  M +  ++L FI   A+    +SL+ P+       +   LGD + ++G +PE+EVS+ LLRED+E+VL  LSPRER+VLR+RYG D+G  K  +EIG++++V   RIRQIEA+A+RKLRHPN +  L E+
Sbjct:   47 PARRRTTQTKKKHYTEDSIRLYLQEIGRIRLLRAEEEIELARKIADLLELERIRDDIAD----------------QLEDEPTDA------DWANAVDMPLAAFRRRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLP--ISLETPI----GKEEDSRLGDFIESDGETPEDEVSKSLLREDLESVLSTLSPRERDVLRLRYGLDNGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEY 371          
BLAST of Ggra6676.t1 vs. uniprot
Match: A0A0P8C346 (RNA polymerase sigma factor SigA n=3 Tax=Leptolyngbyaceae TaxID=1890438 RepID=A0A0P8C346_9CYAN)

HSP 1 Score: 270 bits (689), Expect = 1.520e-83
Identity = 153/332 (46.08%), Postives = 214/332 (64.46%), Query Frame = 0
Query:   69 YLRDIGTISLLSDEEVAKCSAHIANLSRWELVKGELDAVAARHTQKRRLLTSRYRRQAKPVPAATVSIGDWADALDMDHAAFAAALREARFYKDRLVAANLRLVVSIAKKYRGNGVAFTDLIQEGSLGLIRAAEKFDAQKGFKFTTYASWWIRQAVQRAVSDSSRTIRLPTHVADAAKKARRLANQFEREHNQRPSTEELAQMMGIRPDRLSFILSKAEQTDTLSLDCPLFPGSNCSKPVSLGDCLAANGSSPEEEVSRGLLREDVENVLLMLSPREREVLRMRYGFDDGHTKNFDEIGKMYSVPASRIRQIEARAMRKLRHPNFHRCLTEW 400
            YL++IG I LL  EE  + +  IA+L   E ++ E+D                 +   +P  A      DWA+A+DM   AF   L   R  KD++V +NLRLVVSIAKKY   G++F DLIQEGSLGLIRAAEKFD +KG+KF+TYA+WWIRQA+ RA++D SRTIRLP H+ +   + ++      +E  ++P+ EE+A  M +  ++L FI   A+    +SL+ P+       +   LGD + ++G +PE+EVS+ LLRED+E+VL  LSPRER+VLR+RYG DDG  K  +EIG++++V   RIRQIEA+A+RKLRHPN +  L E+
Sbjct:   95 YLQEIGRIRLLRAEEEIELARKIADLLELERIRDEIDD----------------QLDDEPTDA------DWANAVDMPLPAFRRRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPTEEEIATRMEMTIEKLRFIAKSAQLP--ISLETPI----GKEEDSRLGDFIESDGETPEDEVSKSLLREDLESVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEY 398          
BLAST of Ggra6676.t1 vs. uniprot
Match: A0A2W4U564 (RNA polymerase sigma factor SigA n=1 Tax=Leptolyngbya foveolarum TaxID=47253 RepID=A0A2W4U564_9CYAN)

HSP 1 Score: 269 bits (688), Expect = 1.750e-83
Identity = 154/332 (46.39%), Postives = 213/332 (64.16%), Query Frame = 0
Query:   69 YLRDIGTISLLSDEEVAKCSAHIANLSRWELVKGELDAVAARHTQKRRLLTSRYRRQAKPVPAATVSIGDWADALDMDHAAFAAALREARFYKDRLVAANLRLVVSIAKKYRGNGVAFTDLIQEGSLGLIRAAEKFDAQKGFKFTTYASWWIRQAVQRAVSDSSRTIRLPTHVADAAKKARRLANQFEREHNQRPSTEELAQMMGIRPDRLSFILSKAEQTDTLSLDCPLFPGSNCSKPVSLGDCLAANGSSPEEEVSRGLLREDVENVLLMLSPREREVLRMRYGFDDGHTKNFDEIGKMYSVPASRIRQIEARAMRKLRHPNFHRCLTEW 400
            YL++IG I LL  EE  + +  IA+L   E +  E+D                   Q +  P  T    DWA+A+DM   AF   L   R  KD++V +NLRLVVSIAKKY   G++F DLIQEGSLGLIRAAEKFD +KG+KF+TYA+WWIRQA+ RA++D SRTIRLP H+ +   + ++      +E  ++P+ EE+A  M +  ++L FI   A+    +SL+ P+       +   LGD + ++G +PE+EVS+ LLRED+E+VL  LSPRER+VLR+RYG DDG  K  +EIG++++V   RIRQIEA+A+RKLRHPN +  L E+
Sbjct:   88 YLQEIGRIRLLRAEEEIELARKIADLLELERIYDEIDD------------------QLENEPTDT----DWANAVDMPLPAFQRRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPTEEEIATRMEMTIEKLRFIAKSAQLP--ISLETPI----GKEEDSRLGDFIESDGETPEDEVSKSLLREDLESVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEY 391          
BLAST of Ggra6676.t1 vs. uniprot
Match: RNA polymerase sigma factor RpoD n=2 Tax=Cyanobacteria TaxID=1117 RepID=UPI00194EADD7 (RNA polymerase sigma factor RpoD n=2 Tax=Cyanobacteria TaxID=1117 RepID=UPI00194EADD7)

HSP 1 Score: 268 bits (685), Expect = 3.140e-83
Identity = 152/332 (45.78%), Postives = 214/332 (64.46%), Query Frame = 0
Query:   69 YLRDIGTISLLSDEEVAKCSAHIANLSRWELVKGELDAVAARHTQKRRLLTSRYRRQAKPVPAATVSIGDWADALDMDHAAFAAALREARFYKDRLVAANLRLVVSIAKKYRGNGVAFTDLIQEGSLGLIRAAEKFDAQKGFKFTTYASWWIRQAVQRAVSDSSRTIRLPTHVADAAKKARRLANQFEREHNQRPSTEELAQMMGIRPDRLSFILSKAEQTDTLSLDCPLFPGSNCSKPVSLGDCLAANGSSPEEEVSRGLLREDVENVLLMLSPREREVLRMRYGFDDGHTKNFDEIGKMYSVPASRIRQIEARAMRKLRHPNFHRCLTEW 400
            YL++IG I LL  EE  + +  IA L  +E V+ +L                     ++P      S  +WA+A+D+++  F   L E R  KD++V +NLRLVVSIAKKY   G++F DLIQEGSLGLIRAAEKFD  KG+KF+TYA+WWIRQA+ RA++D SRTIRLP H+ +   + ++      +E  ++P+ EE+A  M +  ++L FI   A+    +SL+ P+       +   LGD + A+G +PE++VS+ LLRED+ENVL  LSPRER+VLR+RYG DDG  K  +EIG++++V   RIRQIEA+A+RKLRHPN +  L E+
Sbjct:   73 YLQEIGRIRLLRAEEEIELARKIAELLEFERVREDLVE----------------NNDSEP------SDREWAEAMDIEYPKFRRRLFEGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHSKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLP--ISLETPI----GKEEDSRLGDFIEADGETPEDQVSKSLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 376          
BLAST of Ggra6676.t1 vs. uniprot
Match: A0A1Z3HQF2 (RNA polymerase sigma factor SigA n=2 Tax=Pseudanabaenales TaxID=2881377 RepID=A0A1Z3HQF2_9CYAN)

HSP 1 Score: 267 bits (682), Expect = 7.390e-83
Identity = 155/353 (43.91%), Postives = 219/353 (62.04%), Query Frame = 0
Query:   54 ARPHSTSVDDNHLYS------YLRDIGTISLLSDEEVAKCSAHIANLSRWELVKGELDAVAARHTQKRRLLTSRYRRQAKPVPAATVSIGDWADALDMDHAAFAAALREARFYKDRLVAANLRLVVSIAKKYRGNGVAFTDLIQEGSLGLIRAAEKFDAQKGFKFTTYASWWIRQAVQRAVSDSSRTIRLPTHVADAAKKARRLANQFEREHNQRPSTEELAQMMGIRPDRLSFILSKAEQTDTLSLDCPLFPGSNCSKPVSLGDCLAANGSSPEEEVSRGLLREDVENVLLMLSPREREVLRMRYGFDDGHTKNFDEIGKMYSVPASRIRQIEARAMRKLRHPNFHRCLTEW 400
            +R   TS D    Y+      YL++IG I LL  EE  + +  IA+L   E ++ +L     R  +                        +WA+A+DM   AF   L + R  KD++V +NLRLVVSIAKKY   G++F DLIQEGSLGLIRAAEKFD +KG+KF+TYA+WWIRQA+ RA++D SRTIRLP H+ +   + ++      +E  ++P+ EE+A  M +  ++L FI   A+    +SL+ P+       +   LGD + ++G +PE+EVS+ LLRED+E+VL  LSPRER+VLR+RYG DDG  K  +EIG++++V   RIRQIEA+A+RKLRHPN +  L E+
Sbjct:   46 SRRRGTSPDKKKHYTEDSIRLYLQEIGRIRLLRAEEEIELARKIADLLELERIRDDLVDSLEREPRD----------------------DEWAEAVDMALPAFRRRLHQGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPTEEEIATRMEMTIEKLRFIAKSAQLP--ISLETPI----GKEEDSRLGDFIESDGETPEDEVSKSLLREDLESVLGTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEY 370          
The following BLAST results are available for this feature:
BLAST of Ggra6676.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IX321.710e-18872.21RNA polymerase sigma factor SigA n=1 Tax=Gracilari... [more]
R7QQE41.490e-12855.22Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A1X6PF576.750e-10050.00RNA_pol_sigma70 domain-containing protein n=1 Tax=... [more]
A0A2V3IWX59.000e-8646.40RNA polymerase sigma factor SigA n=1 Tax=Gracilari... [more]
B4WPM06.100e-8446.08RNA polymerase sigma factor SigA n=2 Tax=Cyanobact... [more]
A0A8J7DS046.790e-8444.19RNA polymerase sigma factor RpoD n=1 Tax=Romeria a... [more]
A0A0P8C3461.520e-8346.08RNA polymerase sigma factor SigA n=3 Tax=Leptolyng... [more]
A0A2W4U5641.750e-8346.39RNA polymerase sigma factor SigA n=1 Tax=Leptolyng... [more]
RNA polymerase sigma factor RpoD n=2 Tax=Cyanobacteria TaxID=1117 RepID=UPI00194EADD73.140e-8345.78RNA polymerase sigma factor RpoD n=2 Tax=Cyanobact... [more]
A0A1Z3HQF27.390e-8343.91RNA polymerase sigma factor SigA n=2 Tax=Pseudanab... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000943RNA polymerase sigma-70PRINTSPR00046SIGMA70FCTcoord: 188..201
score: 68.34
coord: 341..353
score: 52.61
coord: 362..377
score: 30.2
coord: 212..220
score: 73.19
coord: 377..388
score: 62.53
IPR000943RNA polymerase sigma-70PROSITEPS00715SIGMA70_1coord: 188..201
IPR000943RNA polymerase sigma-70PROSITEPS00716SIGMA70_2coord: 362..388
IPR014284RNA polymerase sigma-70 like domainTIGRFAMTIGR02937TIGR02937coord: 162..390
e-value: 1.6E-33
score: 113.6
IPR007627RNA polymerase sigma-70 region 2PFAMPF04542Sigma70_r2coord: 164..233
e-value: 5.4E-20
score: 71.0
NoneNo IPR availableGENE3D1.10.601.10RNA Polymerase Primary Sigma Factorcoord: 95..234
e-value: 1.3E-43
score: 151.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..59
NoneNo IPR availablePANTHERPTHR30603:SF45RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTICcoord: 53..392
NoneNo IPR availablePANTHERPTHR30603RNA POLYMERASE SIGMA FACTOR RPOcoord: 53..392
NoneNo IPR availableCDDcd06171Sigma70_r4coord: 331..389
e-value: 8.53048E-12
score: 57.8846
IPR007630RNA polymerase sigma-70 region 4PFAMPF04545Sigma70_r4coord: 340..390
e-value: 6.8E-17
score: 60.7
IPR007624RNA polymerase sigma-70 region 3PFAMPF04539Sigma70_r3coord: 246..323
e-value: 3.3E-6
score: 27.1
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 235..285
e-value: 7.7E-9
score: 37.5
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 323..403
e-value: 2.1E-24
score: 87.0
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 237..310
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 305..393
IPR013325RNA polymerase sigma factor, region 2SUPERFAMILY88946Sigma2 domain of RNA polymerase sigma factorscoord: 61..234

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:164580..165791 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6676.t1Ggra6676.t1Gracilaria gracilis GNS1m malemRNAtig00000056_pilon 164580..165791 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6676.t1 ID=Ggra6676.t1|Name=Ggra6676.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=404bp
MSASAFAPAPLPLRACTQRRSRALSHAPQMVVAAPQASRSASVARPRPRP
RAPARPHSTSVDDNHLYSYLRDIGTISLLSDEEVAKCSAHIANLSRWELV
KGELDAVAARHTQKRRLLTSRYRRQAKPVPAATVSIGDWADALDMDHAAF
AAALREARFYKDRLVAANLRLVVSIAKKYRGNGVAFTDLIQEGSLGLIRA
AEKFDAQKGFKFTTYASWWIRQAVQRAVSDSSRTIRLPTHVADAAKKARR
LANQFEREHNQRPSTEELAQMMGIRPDRLSFILSKAEQTDTLSLDCPLFP
GSNCSKPVSLGDCLAANGSSPEEEVSRGLLREDVENVLLMLSPREREVLR
MRYGFDDGHTKNFDEIGKMYSVPASRIRQIEARAMRKLRHPNFHRCLTEW
TQA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000943RNA_pol_sigma70
IPR014284RNA_pol_sigma-70_dom
IPR007627RNA_pol_sigma70_r2
IPR007630RNA_pol_sigma70_r4
IPR007624RNA_pol_sigma70_r3
IPR036388WH-like_DNA-bd_sf
IPR013324RNA_pol_sigma_r3/r4-like
IPR013325RNA_pol_sigma_r2