Ggra6668.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6668.t1
Unique NameGgra6668.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length1189
Homology
BLAST of Ggra6668.t1 vs. uniprot
Match: A0A2V3IX69 (RAB3GAP2_N domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IX69_9FLOR)

HSP 1 Score: 1502 bits (3888), Expect = 0.000e+0
Identity = 810/1150 (70.43%), Postives = 928/1150 (80.70%), Query Frame = 0
Query:   34 LRLRVPRLHTPRQWQWAWPLQPPRAXXXXXXXXXXXVGAAAPLRAAWLAAVRVVAVADDAAALAFVSQHGRVALLRVGRQPVALLVPPTAPPLCEHATALSFFQVAAAPDARVRQLLAVGYHSGAVAFFDVDTAQLLALSQPQQQPVRRLRYYPTFHLIPHAPLYPVATANSALVALYSWTAAVARISATDILALLSAPPPVYDLHGTHWLLWNLGAQHAVLDVAPCATDPSSICDPDPTPPDAPLRLLAAGLDPPLVAYSVTTDAAFSARAAAKRAATTVLSAARGFLLSRIGSSSAAADTSSPPDLSPLVGVARHSASWADHFAALHTSISIGDMRDTARKSVNAVLQRGRRVADDVDFSSDAGVYAASAIYKALQFRKGAQDAPPADAPLPARGSELQAADPALAWLVRKRSLETEVAARVARLPQNTRIVERVVAAPLPCSLLATSDTLGRIFVQDPRDLCVLRVLKGYRDAQIAWLAHGGPLLVLHAPRLNVLELHQPLAQRRTDAFRLEPGSVLVQSTSHHVFVVVPDGSLYELMKSRKGH-MPTTSHGDRERESDSVAIREDGQSAQHAANGPHEESDLD-----SQRAPNVELVDSFTAAVRKGRISVAYECLQRVEDDAYKLAYLMATLVTCTSYIRTEIHVAVSSKAAEIASNLKNTDLVSRFEAHRKLAEAFGLLAADEIPFELSGEQARLTKYGPRLLEDELGASLAEFAVDELTGGSGSSRAMRTKSAQVNPETELINCERFILSHTIAPALDLRAKNDYQLQPRPDLEHAERVWLSKAYFLKLLELDSVSQPTPGREHPATSDVFVALTEFIGLSESEITRQFVTFFLSVPILSLLNTHVSVYASPLRCAIARLCGQFPPDVVDPIISDACETTSAIPNAVLLMRLCSEHANDISAPEERRTFLESLFRLDEVLMYRKLVRGSSVSPEVYEKFVARRCTGVPGDAERHAITCLIDANDFNRAGNIIVSLHTSRASKNLDRHQFASISEAALHACRRKAAEFITKEGSKVLPSGVLTWILATQGSEEQT--KERESPSSRDRRMREMRALLLNAHTYIADSSVDAVRCLQLAEALSALLELDSQAARSQKMVAPTASHDLDDMKVATVDLKDIQETREDKVLPDANDTPGAENEVGS 1175
            L+LR PRLHTPRQW WAWPLQP  A               +PLRA W +AVR VAVADDA+ALAFVS  GR ALLR G  P  L V   + PLC +AT+L+FF +A       R LLAV YHSGAVAFFDV++A LLA+S+PQ QPVRRLRYYPTFHLIPH PLYPVA+ NS L+ALY+WT AVARISATDIL LL+   PV+D HGT+WL+WNL AQHAVLDVAPCATDPSSIC+PDPTPP APLRL AAGL+PPL AYSVTTDAAFSAR AAKRAA+T+LSAARGF LSRIGS+S   D  S  +LSP++GVARHSASWAD F+ALHTSISIGDMRDTARKSVNAVLQRG  VA+DVD  +DA + AASA+Y+A  FRK   +   A A  P +   L   D ++   VRKRSLE EVAARVARLPQN RI+ERVVAAPLPCSLLATSDTLGRIFVQDPRDLCVLRVLKGYRDAQ+AWLA GGPLLV++APRL+VLELHQPLAQRR DAFRL+ G++LVQS+SHHVFVV PDG+LYEL KSRKGH +   S  +R+ E+  + +RE+ +  +   +  +   D +     +Q+AP+VELVD+FT AVRKG  S+A ECLQRVE DAYKLAYLMATLVTCTSYIRTE+HVA++SKAAEIAS L+N+DLVSRFEAHRKLAEAFGLLAADEIPFEL+G+QARLTKYG RLLED+LGA LAEFAVDEL   S  ++ M  +S +  PETELINCERFILSH IAP LD+RA +DYQLQPR DLE  ERVWLSKAYFLKLLEL+SVS PTPGREHP  +DVF+AL E+I  SE+EITR FVTFFL+VPILSLLNTHVS+YASPLRCA++RLC QFP D+VDPII+DACETTSA+PNAVLL+RLC+ H + ++  EE   FLESL RLDEVL++RKLVRGSSVSPEV EKFVARRCTGVPGDAERHA+TCLIDA+DFNRA NIIVSLH SR  KN DR Q ASISEAALHACRRKAAEFIT+E SKVLP+GVLTWILA+QGS+EQ+   E E  +S+DRRMREMRALLLNAHTYI DSSVDAVRCLQLAEALSALLE ++    ++K + P  + D+  +KV TVDL D+       V  + + T   E E GS
Sbjct:   20 LQLRPPRLHTPRQWHWAWPLQPLDAAAPPPP---------SPLRAVWASAVRAVAVADDASALAFVSHDGRAALLRPGSAPRPLAVVAQSAPLCTNATSLAFFHIAVTDRHPPRHLLAVSYHSGAVAFFDVNSATLLAVSRPQHQPVRRLRYYPTFHLIPHNPLYPVASTNSGLIALYAWTGAVARISATDILNLLAPEQPVFDPHGTNWLVWNLTAQHAVLDVAPCATDPSSICEPDPTPPHAPLRLAAAGLNPPLAAYSVTTDAAFSARTAAKRAASTMLSAARGFFLSRIGSASLTTDAPSAQELSPVIGVARHSASWADDFSALHTSISIGDMRDTARKSVNAVLQRGSLVAEDVDLRTDAPLSAASALYRAFDFRKVLLEGEKASASQP-QPQALPNDDESV--FVRKRSLEAEVAARVARLPQNARIIERVVAAPLPCSLLATSDTLGRIFVQDPRDLCVLRVLKGYRDAQMAWLAQGGPLLVVYAPRLSVLELHQPLAQRRIDAFRLQSGTMLVQSSSHHVFVVFPDGNLYELKKSRKGHVLADRSDKNRKLEASKLVLREEKEQEKEQDSTEYTSIDENYSPSVNQQAPDVELVDNFTKAVRKGYTSMASECLQRVEKDAYKLAYLMATLVTCTSYIRTEVHVALASKAAEIASRLENSDLVSRFEAHRKLAEAFGLLAADEIPFELTGDQARLTKYGHRLLEDDLGAGLAEFAVDELKASSQQAKKMGKRSRRAMPETELINCERFILSHAIAPTLDVRANSDYQLQPRSDLEAEERVWLSKAYFLKLLELESVSVPTPGREHPIATDVFIALKEYIAFSEAEITRYFVTFFLNVPILSLLNTHVSLYASPLRCAVSRLCSQFPRDIVDPIITDACETTSAVPNAVLLIRLCAIHDSQVAGTEENNRFLESLGRLDEVLLFRKLVRGSSVSPEVSEKFVARRCTGVPGDAERHALTCLIDADDFNRASNIIVSLHGSRTKKNFDRQQSASISEAALHACRRKAAEFITREASKVLPAGVLTWILASQGSDEQSTRSEEELYASKDRRMREMRALLLNAHTYIVDSSVDAVRCLQLAEALSALLEQEALI-HTEKQIPPAPASDIGSIKVETVDLGDLHTPSTSPVAEEKHSTASQEMEGGS 1156          
BLAST of Ggra6668.t1 vs. uniprot
Match: R7QQE9 (RAB3GAP2_N domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QQE9_CHOCR)

HSP 1 Score: 694 bits (1790), Expect = 2.100e-229
Identity = 387/812 (47.66%), Postives = 535/812 (65.89%), Query Frame = 0
Query:  314 VLSAARGFLLSRIGSSSAAADTSSPPDLSPLVGVARHSASWADHFAALHTSISIGDMRDTARKSVNAVLQRGRRVADDVDFSSDAGVYAASAIYKALQFRKGAQDAPPADAPLPARGSELQAADPALAWLVRKRSLETEVAARVARLPQNTRIVERVVAAPLPCSLLATSDTLGRIFVQDPRDLCVLRVLKGYRDAQIAWLAHGGPLLVLHAPRLNVLELHQPLAQRRTDAFRLEPGSVLVQSTSHHVFVVVPDGSLYELMKSRKGHMPTTSHGDRERESDSVAIREDGQSAQHAANGPHEESDL----DSQRAPNVELVDSFTAAVRKGRISVAYECLQRVEDDAYKLAYLMATLVTCTSYIRTEIHVAVSSKAAEIASNLKNTDLVSRFEAHRKLAEAFGLLAADEIPFELSGEQARLTKYGPRLLEDELGASLAEFAVDELTGGSGSSRAMRTKSAQVNPETELINCERFILSHTIAPALDLRAKNDYQLQPRPDLEHAERVWLSKAYFLKLLELDSVSQPTPGREHPATSDVFVALTEFIGLSESEITRQFVTFFLSVPILSLLNTHVSVYASPLRCAIARLCGQFPPDVVDPIISDACETTSAIPNAVLLMRLCSEHANDISAPEERRTFLESLFRLDEVLMYRKLVRGSSVSPEVYEKFVARRCTGVPGDAERHAITCLIDANDFNRAGNIIVSLHTSRASKNLDRHQFASISEAALHACRRKAAEFITKEGSKVLPSGVLTWILATQGSEEQTKERESPSS-RDRRMREMRALLLNAHTYIADSSVDAVRCLQLAEALSALLELD 1120
            +LS A+GFL SRI     A + +   + + + G AR   SW +     + SI++ D+RD+ARKSVNAVL R R+  D  D ++  G+ + ++   +     G Q A  A+  L    SE        A+  ++     E  A  A+LPQN R+VER+ AAPLPCSLLATSDTLGRIFVQD RDLCVLRVLKGYRDA +AW+A GGPLL + APRLNVLELH+PL  +R  AFRL PGS+LVQS  H    + PDG LYELM+SRK      +    E+ +      E   SA    NG  + ++      S    + E +  F  AV++G+ SVA ECLQ V D   K+A+LM  ++TC SY+R EIH+A+SSKAA+IAS+L++ DL+SRFEAH +LAEA+ ++ A+ +P     E+  + KYG +L+ED++GA L EFAV+ + G +  +     ++     E  ++ CERFILSH + P++D+R+++DY L+PR D+  AE+VWL+K YF +LL +DS   PT GREHPAT DVF+AL+E IGL E+E+   F  FFL VP+L+LL T V+++ASP+RCAI+RL   F  ++VD ++ + CET++ IPNAVLL RLC  H    S   +   FL SL RL+EVL++RKL+ GS + P VYEKF AR C+G  GDAERHA+T LI+ ++F+RA  I++ L  SR    L   + AS+SEAAL ACR+KA   IT  G +V+P  V++WIL+ +  E+Q+   +  +  R+  +R++R++LL+AH Y +DSSVDAVRCLQLAEA+SAL+EL+
Sbjct:    1 MLSVAKGFLFSRITGEQTAPNPTEE-ERNVVTGAARFIISWGNDTTPANASINLRDVRDSARKSVNAVLSRSRKSIDINDIAASYGLRSQNSRPLSDSVLHGDQTAL-AETALDQSNSEN-------AFSSQRSRFAGEEVALAAKLPQNARVVERIAAAPLPCSLLATSDTLGRIFVQDSRDLCVLRVLKGYRDAHVAWVAQGGPLLAILAPRLNVLELHRPLDVKRIAAFRLRPGSMLVQSAMHRALCISPDGHLYELMRSRKSGGVAAAGIKEEQPNGKAEELETAHSA--TVNGVEDMTEAVRTGQSGSVVDYESLHMFLEAVKRGQTSVAVECLQNVRDSRQKVAHLMTAVLTCASYVRPEIHIALSSKAAQIASSLEDRDLLSRFEAHSRLAEAYAIVFAEILPEGAVAEENSVAKYGKQLMEDDIGAGLLEFAVEAMKGDASPANVSGKRTRSSKEEGNMLTCERFILSHALHPSMDIRSRSDYILRPRRDISEAEQVWLAKLYFSRLLHVDSADLPTEGREHPATKDVFLALSEVIGLQEAELAHHFAIFFLHVPLLALLKTRVAIHASPIRCAISRLRTGFSQEIVDQVLIEECETSACIPNAVLLTRLCVIHERRRSDGNDA-LFLASLDRLEEVLLFRKLIAGSKIPPAVYEKFTARGCSGALGDAERHAVTSLIEWHEFDRAAKILIRLDESRRGHKLAWQESASVSEAALLACRKKAVSVITDAGREVIPENVVSWILSVEVDEDQSHWIQLINEQRETVLRKLRSVLLSAHQYFSDSSVDAVRCLQLAEAMSALIELE 800          
BLAST of Ggra6668.t1 vs. uniprot
Match: R7Q2T9 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q2T9_CHOCR)

HSP 1 Score: 101 bits (252), Expect = 5.370e-21
Identity = 69/170 (40.59%), Postives = 95/170 (55.88%), Query Frame = 0
Query:  344 LVGVARHSASWADHFAALHTSISIGDMRDTARKSVNAVLQRGRRVADDVDFSSDAGVYAASAIYKALQFRKGAQDAPPADAPLPARGSELQAADPAL-------AWLVRKRSLETEVAARVARLPQNTRIVERVVAAPLPCSLLATSDTLGRIFVQDPRDLCVLRVLKGY 506
            + G AR   SW +     + SI++ D+R + RKSVNAVL R R+  D  D ++  G+       ++  +R      P +D+ L   G  +   + AL       A+  ++     E  A  A+LP + ++VER+ AAPLPCSLLATS TL RIFVQD RDLCVLR LKGY
Sbjct:   18 VTGAARFIISWENDNTPDNASINLCDIRHSTRKSVNAVLSRSRKSIDINDIAASYGL-------QSQNWR------PLSDSVL--YGDHIALTETALDQSNSKNAFSPQRSHFAGEEVALAAKLPHDAKVVERIAAAPLPCSLLATSHTLSRIFVQDSRDLCVLRELKGY 172          
BLAST of Ggra6668.t1 vs. uniprot
Match: A0A0D2LW35 (RAB3GAP2_N domain-containing protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2LW35_9CHLO)

HSP 1 Score: 65.9 bits (159), Expect = 2.570e-7
Identity = 37/84 (44.05%), Postives = 50/84 (59.52%), Query Frame = 0
Query:  474 PLPC-SLLATSDTLGRIFVQDPRDLCVLRVLKGYRDAQIAWL--------AHGGPLLVLHAPRLNVLELHQPLAQRRTDAFRLE 548
            P P  +LLA +D LGR+ + +  ++ VLR+ KGYRDAQ  W         AH G LLVLHAPR +++E+  P +  R  A R E
Sbjct:  293 PAPAGALLAAADNLGRVLLVNGANMAVLRMWKGYRDAQCGWALPPDGHPWAHHGLLLVLHAPRRDLIEVWAPRSGARVAAARAE 376          
BLAST of Ggra6668.t1 vs. uniprot
Match: A0A0L0DBB9 (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DBB9_THETB)

HSP 1 Score: 65.9 bits (159), Expect = 5.830e-7
Identity = 66/234 (28.21%), Postives = 110/234 (47.01%), Query Frame = 0
Query:  343 PLVGVARHSASWA-DHFAALHTS--ISIGDMRDTARKSVNAVLQRGRRVADDVDFSSDAGVYAASAIYKALQ--FRK-----GAQDAPPADAPLPARGSELQAADPALAWLVRKRSLETEVAARVARLPQNTRIV--ERVVAAPLPC---SLLATSDTLGRIFVQDPRDLCVLRVLKGYRDAQIAWLAHGGP---LLVLHAPRLNVLELHQPLAQRRTDAFRLEPGSVLVQSTS 558
            PL+  ARH+ + A + F    T+  +++G     A   ++A   R   +++ + ++SD      +AI+   +  F +     GA+  P A APL   G             VR  +      A+ A+LPQ   I   ER V   +P    ++ A +D  GR+ + D  +L ++R+ KGYRDAQ+ WL         LV++AP+  +LE+ +     R  A ++    VLVQ+ S
Sbjct:  634 PLLDSARHAGAAAGNRFGLPWTTRLVAVGSGPMIAAYELDA---RASMLSETIAYASDVASKVTTAIFSMAKSWFSRNVVPGGAEPGPSAVAPLARPG-------------VRSSTAADAARAKPAKLPQLAYIADAERRVCLIVPAPRGAIAALADGFGRVLLLDTSNLTIVRIWKGYRDAQLGWLQPESSRVLALVIYAPKRGLLEIWRMRHGERLVARKVASNGVLVQAPS 851          
BLAST of Ggra6668.t1 vs. uniprot
Match: A0A2V0NLH5 (Rab3 GTPase-activating non-catalytic subunit n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NLH5_9CHLO)

HSP 1 Score: 63.2 bits (152), Expect = 2.500e-6
Identity = 39/92 (42.39%), Postives = 50/92 (54.35%), Query Frame = 0
Query:  473 APLPC-SLLATSDTLGRIFVQDPRDLCVLRVLKGYRDAQIAWL--------AHGGPLLVLHAPRLNVLELHQPLAQRRTDAFRLEPGSVLVQ 555
            AP P  +LLA +D LGR+ + D   + VLR+ KGYRDAQ  W         A  G LL ++APR  +LEL  P    R  A RLE    L++
Sbjct:  408 APAPAGALLAAADNLGRVLLVDGASMVVLRMWKGYRDAQCGWALPRAPHPWARHGLLLAIYAPRRQLLELWAPRQGVRVAAARLEGACHLLR 499          
The following BLAST results are available for this feature:
BLAST of Ggra6668.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2V3IX690.000e+070.43RAB3GAP2_N domain-containing protein n=1 Tax=Graci... [more]
R7QQE92.100e-22947.66RAB3GAP2_N domain-containing protein n=1 Tax=Chond... [more]
R7Q2T95.370e-2140.59Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A0D2LW352.570e-744.05RAB3GAP2_N domain-containing protein n=1 Tax=Monor... [more]
A0A0L0DBB95.830e-728.21Uncharacterized protein n=1 Tax=Thecamonas trahens... [more]
A0A2V0NLH52.500e-642.39Rab3 GTPase-activating non-catalytic subunit n=1 T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032839Rab3-GAP regulatory subunit, N-terminalPFAMPF14655RAB3GAP2_Ncoord: 454..515
e-value: 1.5E-12
score: 47.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1062..1082
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 579..598
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1153..1188
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 575..623
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1066..1082
IPR026059Rab3GAP regulatory subunitPANTHERPTHR12472RAB3-GAP REGULATORY DOMAINcoord: 128..339
coord: 454..561

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:68765..72503 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6668.t1Ggra6668.t1Gracilaria gracilis GNS1m malemRNAtig00000056_pilon 68765..72503 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6668.t1 ID=Ggra6668.t1|Name=Ggra6668.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=1189bp
MLSGGSGGVESAAKQRQINARARRRYWRLVLALLRLRVPRLHTPRQWQWA
WPLQPPRAAAAAAAAAAAAVGAAAPLRAAWLAAVRVVAVADDAAALAFVS
QHGRVALLRVGRQPVALLVPPTAPPLCEHATALSFFQVAAAPDARVRQLL
AVGYHSGAVAFFDVDTAQLLALSQPQQQPVRRLRYYPTFHLIPHAPLYPV
ATANSALVALYSWTAAVARISATDILALLSAPPPVYDLHGTHWLLWNLGA
QHAVLDVAPCATDPSSICDPDPTPPDAPLRLLAAGLDPPLVAYSVTTDAA
FSARAAAKRAATTVLSAARGFLLSRIGSSSAAADTSSPPDLSPLVGVARH
SASWADHFAALHTSISIGDMRDTARKSVNAVLQRGRRVADDVDFSSDAGV
YAASAIYKALQFRKGAQDAPPADAPLPARGSELQAADPALAWLVRKRSLE
TEVAARVARLPQNTRIVERVVAAPLPCSLLATSDTLGRIFVQDPRDLCVL
RVLKGYRDAQIAWLAHGGPLLVLHAPRLNVLELHQPLAQRRTDAFRLEPG
SVLVQSTSHHVFVVVPDGSLYELMKSRKGHMPTTSHGDRERESDSVAIRE
DGQSAQHAANGPHEESDLDSQRAPNVELVDSFTAAVRKGRISVAYECLQR
VEDDAYKLAYLMATLVTCTSYIRTEIHVAVSSKAAEIASNLKNTDLVSRF
EAHRKLAEAFGLLAADEIPFELSGEQARLTKYGPRLLEDELGASLAEFAV
DELTGGSGSSRAMRTKSAQVNPETELINCERFILSHTIAPALDLRAKNDY
QLQPRPDLEHAERVWLSKAYFLKLLELDSVSQPTPGREHPATSDVFVALT
EFIGLSESEITRQFVTFFLSVPILSLLNTHVSVYASPLRCAIARLCGQFP
PDVVDPIISDACETTSAIPNAVLLMRLCSEHANDISAPEERRTFLESLFR
LDEVLMYRKLVRGSSVSPEVYEKFVARRCTGVPGDAERHAITCLIDANDF
NRAGNIIVSLHTSRASKNLDRHQFASISEAALHACRRKAAEFITKEGSKV
LPSGVLTWILATQGSEEQTKERESPSSRDRRMREMRALLLNAHTYIADSS
VDAVRCLQLAEALSALLELDSQAARSQKMVAPTASHDLDDMKVATVDLKD
IQETREDKVLPDANDTPGAENEVGSNEDEFFDASESLS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032839RAB3GAP_N
IPR026059Rab3GAP2