Ggra6603.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6603.t1
Unique NameGgra6603.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length155
Homology
BLAST of Ggra6603.t1 vs. uniprot
Match: R7QDD7 (Histone H2B n=2 Tax=Chondrus crispus TaxID=2769 RepID=R7QDD7_CHOCR)

HSP 1 Score: 213 bits (542), Expect = 6.240e-69
Identity = 113/125 (90.40%), Postives = 120/125 (96.00%), Query Frame = 0
Query:    2 PKGGGKSVPAAEKKVAKKGISGGGVEKTTRKKKRSESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVADLFERIATEAAKLASYNNTKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSSS 126
            PKG  K VP AEKK+AKKG+SGG VEKTT++KKR+ESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVADLFERIA+E+AKLASYNNTKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSSS
Sbjct:    3 PKGN-KGVPTAEKKIAKKGVSGGAVEKTTKRKKRNESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVADLFERIASESAKLASYNNTKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSSS 126          
BLAST of Ggra6603.t1 vs. uniprot
Match: A0A2V3J066 (Histone H2B n=2 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J066_9FLOR)

HSP 1 Score: 206 bits (524), Expect = 3.230e-66
Identity = 112/121 (92.56%), Postives = 117/121 (96.69%), Query Frame = 0
Query:    6 GKSVPAAEKKVAKKGISGGGVEKTTRKKKRSESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVADLFERIATEAAKLASYNNTKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSSS 126
            GKSVP AEKKVAKKGIS G  EK++RKKKR+ESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVADLFERIATEAAKL+SYN+TKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSSS
Sbjct:    5 GKSVPVAEKKVAKKGISAG-PEKSSRKKKRNESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVADLFERIATEAAKLSSYNHTKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSSS 124          
BLAST of Ggra6603.t1 vs. uniprot
Match: Q7XY84 (Histone H2B n=1 Tax=Griffithsia japonica TaxID=83288 RepID=Q7XY84_GRIJA)

HSP 1 Score: 199 bits (507), Expect = 1.250e-63
Identity = 108/121 (89.26%), Postives = 113/121 (93.39%), Query Frame = 0
Query:    6 GKSVPAAEKKVAKKGISGGGVEKTTRKKKRSESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVADLFERIATEAAKLASYNNTKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSSS 126
            GKSVP AEKKVAKK + G   EK T+KKKRSESYSIYIYKVLKQVHP+TGISSKAMSIMNSFV DLFERIATEAAKLA+YNN+KTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSSS
Sbjct:    5 GKSVPIAEKKVAKKAVPGA-TEKVTKKKKRSESYSIYIYKVLKQVHPETGISSKAMSIMNSFVDDLFERIATEAAKLATYNNSKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSSS 124          
BLAST of Ggra6603.t1 vs. uniprot
Match: A0A1X6NSL0 (Histone H2B n=2 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NSL0_PORUM)

HSP 1 Score: 192 bits (488), Expect = 1.100e-59
Identity = 106/125 (84.80%), Postives = 111/125 (88.80%), Query Frame = 0
Query:    6 GKSVPAAEKKVAKKGISG----GGVEKTTRKKKRSESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVADLFERIATEAAKLASYNNTKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSSS 126
            GKSVP AEKKVAKKG++      G +K  R KKRSESYSIYIYKVLKQVHPDTGISSKAMSIMNSFV DLFERIA EAAKL+SYN +KTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSSS
Sbjct:   74 GKSVPMAEKKVAKKGVAATSDKDGKDKKKRTKKRSESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVNDLFERIAAEAAKLSSYNKSKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSSS 198          
BLAST of Ggra6603.t1 vs. uniprot
Match: A0A1X6P9Y0 (Histone H2B n=2 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P9Y0_PORUM)

HSP 1 Score: 189 bits (480), Expect = 1.850e-59
Identity = 104/123 (84.55%), Postives = 110/123 (89.43%), Query Frame = 0
Query:    6 GKSVPAAEKKVAKKGISGGGVEKTTRK--KKRSESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVADLFERIATEAAKLASYNNTKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSSS 126
            GKSVP AEKKVAKKG++    +   +K  KKRSESYSIYIYKVLKQVHPDTGISSKAMSIMNSFV DLFERIA EAAKL+SYN +KTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSSS
Sbjct:    5 GKSVPIAEKKVAKKGVASADKDGKDKKRTKKRSESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVNDLFERIAAEAAKLSSYNKSKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSSS 127          
BLAST of Ggra6603.t1 vs. uniprot
Match: A0A7S0XIQ2 (Histone H2B n=2 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0XIQ2_9RHOD)

HSP 1 Score: 176 bits (447), Expect = 4.900e-54
Identity = 97/125 (77.60%), Postives = 105/125 (84.00%), Query Frame = 0
Query:    2 PKGGGKSVPAAEKKVAKKGISGGGVEKTTRKKKRSESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVADLFERIATEAAKLASYNNTKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSSS 126
            PKG  KS+PAA          GG  +K +RKKKR ESYSIY+YKVLKQVHP+TGISSKAMSIMNSFV DLFERIA E+AKLA Y+ TKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSS+
Sbjct:   34 PKGS-KSLPAAXXXXXXXXXXGGDADKKSRKKKRVESYSIYVYKVLKQVHPETGISSKAMSIMNSFVNDLFERIAAESAKLAQYSKTKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSST 157          
BLAST of Ggra6603.t1 vs. uniprot
Match: M2VZY7 (Histone H2B n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VZY7_GALSU)

HSP 1 Score: 172 bits (437), Expect = 5.020e-53
Identity = 97/125 (77.60%), Postives = 106/125 (84.80%), Query Frame = 0
Query:    2 PKGGGKSVPAAEKKVAKKGISGGGVEKTTRKKKRSESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVADLFERIATEAAKLASYNNTKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSSS 126
            PKG  KSVP A KK        G  EK   KKKR+ESYSIYIYKVLKQVHPDTGISSKAMSIMNSFV D+FERIA+E++KLA+Y+ TKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKY+S+
Sbjct:    3 PKGS-KSVPVAGKKPI------GKAEKRKSKKKRAESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIASESSKLAAYSKTKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTST 120          
BLAST of Ggra6603.t1 vs. uniprot
Match: M2XSM4 (Histone H2B n=3 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XSM4_GALSU)

HSP 1 Score: 170 bits (430), Expect = 5.830e-52
Identity = 95/125 (76.00%), Postives = 106/125 (84.80%), Query Frame = 0
Query:    2 PKGGGKSVPAAEKKVAKKGISGGGVEKTTRKKKRSESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVADLFERIATEAAKLASYNNTKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSSS 126
            PKG  KSVP A KK   K      V++   KKKRSE+YSIYIYKVLKQVHPDTGIS KAMSIMNSFV D+FERIA+EA+KL++Y+ +KTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKY+SS
Sbjct:    3 PKGA-KSVPVAGKKPIPK------VDRKKSKKKRSETYSIYIYKVLKQVHPDTGISGKAMSIMNSFVNDIFERIASEASKLSAYSKSKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 120          
BLAST of Ggra6603.t1 vs. uniprot
Match: M1V980 (Histone H2B n=2 Tax=Cyanidiaceae TaxID=265316 RepID=M1V980_CYAM1)

HSP 1 Score: 169 bits (429), Expect = 7.770e-52
Identity = 94/114 (82.46%), Postives = 102/114 (89.47%), Query Frame = 0
Query:   14 KKVAKKGISGGGVEKTTRKKKRSESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVADLFERIATEAAKLASYNNTKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSSSQ 127
            KKVAK   S   ++K  +K+KR E+YSIYIYKVLKQVHPDTGISSKAMSIMNSFV DLFERIA+EA+KLA YN TKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKY+SSQ
Sbjct:   10 KKVAKAPAS---IDK--KKRKRLETYSIYIYKVLKQVHPDTGISSKAMSIMNSFVNDLFERIASEASKLAQYNKTKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSQ 118          
BLAST of Ggra6603.t1 vs. uniprot
Match: histone H2B-like n=2 Tax=Copidosoma floridanum TaxID=29053 RepID=UPI0006C95E5D (histone H2B-like n=2 Tax=Copidosoma floridanum TaxID=29053 RepID=UPI0006C95E5D)

HSP 1 Score: 167 bits (424), Expect = 5.410e-51
Identity = 93/123 (75.61%), Postives = 102/123 (82.93%), Query Frame = 0
Query:    7 KSVPAAEKKVAK--KGISGGGVEKTTRKKKRSESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVADLFERIATEAAKLASYNNTKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSSSQ 127
            K+    EKK AK  K IS G  +K  R KKR ESY IYIYKVLKQVHPDTG+SSKAMSIMNSFV D+FERIATEA++LA YN   T+TSREIQTAVRLLLPGELAKHAVSEGTKAVTKY+SS+
Sbjct:    4 KTATPVEKKSAKAMKNISKG--DKKKRSKKRKESYGIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIATEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 124          
The following BLAST results are available for this feature:
BLAST of Ggra6603.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7QDD76.240e-6990.40Histone H2B n=2 Tax=Chondrus crispus TaxID=2769 Re... [more]
A0A2V3J0663.230e-6692.56Histone H2B n=2 Tax=Gracilariopsis chorda TaxID=44... [more]
Q7XY841.250e-6389.26Histone H2B n=1 Tax=Griffithsia japonica TaxID=832... [more]
A0A1X6NSL01.100e-5984.80Histone H2B n=2 Tax=Porphyra umbilicalis TaxID=278... [more]
A0A1X6P9Y01.850e-5984.55Histone H2B n=2 Tax=Porphyra umbilicalis TaxID=278... [more]
A0A7S0XIQ24.900e-5477.60Histone H2B n=2 Tax=Erythrolobus madagascarensis T... [more]
M2VZY75.020e-5377.60Histone H2B n=1 Tax=Galdieria sulphuraria TaxID=13... [more]
M2XSM45.830e-5276.00Histone H2B n=3 Tax=Galdieria sulphuraria TaxID=13... [more]
M1V9807.770e-5282.46Histone H2B n=2 Tax=Cyanidiaceae TaxID=265316 RepI... [more]
histone H2B-like n=2 Tax=Copidosoma floridanum TaxID=29053 RepID=UPI0006C95E5D5.410e-5175.61histone H2B-like n=2 Tax=Copidosoma floridanum Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000558Histone H2BPRINTSPR00621HISTONEH2Bcoord: 58..78
score: 77.41
coord: 39..57
score: 87.67
coord: 110..123
score: 95.85
coord: 97..110
score: 94.9
coord: 80..97
score: 58.47
IPR000558Histone H2BSMARTSM00427h2b3coord: 29..125
e-value: 8.7E-68
score: 241.2
IPR000558Histone H2BPANTHERPTHR23428HISTONE H2Bcoord: 6..131
IPR000558Histone H2BPROSITEPS00357HISTONE_H2Bcoord: 94..116
IPR009072Histone-foldGENE3D1.10.20.10Histone, subunit Acoord: 3..127
e-value: 2.1E-58
score: 197.8
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 10..126
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 13..102
e-value: 4.7E-20
score: 72.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30
NoneNo IPR availablePANTHERPTHR23428:SF266HISTONE H2Bcoord: 6..131

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:537422..537956 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6603.t1Ggra6603.t1Gracilaria gracilis GNS1m malemRNAtig00000081_pilon 537422..537956 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6603.t1 ID=Ggra6603.t1|Name=Ggra6603.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=155bp
MPKGGGKSVPAAEKKVAKKGISGGGVEKTTRKKKRSESYSIYIYKVLKQV
HPDTGISSKAMSIMNSFVADLFERIATEAAKLASYNNTKTLTSREIQTAV
RLLLPGELAKHAVSEGTKAVTKYSSSQPVEVQHTATEFLKAPVTEAMRSF
YRPH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000558Histone_H2B
IPR009072Histone-fold
IPR007125Histone_H2A/H2B/H3