Ggra6587.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6587.t1
Unique NameGgra6587.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length178
Homology
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BLAST of Ggra6587.t1 vs. uniprot
Match: A0A2V3IC49 (Copia protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IC49_9FLOR)

HSP 1 Score: 201 bits (511), Expect = 3.000e-60
Identity = 107/177 (60.45%), Postives = 142/177 (80.23%), Query Frame = 0 
Query:    1 MSESEKTRIDPLKEGQDFAIWIIRVEAACNAKEIGDTLEQEICTSEEQEKHTQFRAAQKKASGIIVTALSNESLRVMHGYVHNPCLMLQKLGERYDSKTAASRIEKMTELIALCFNSTKPDMGKHIDKMRGVLEKLEAIDTKIQKELATAILIASIEESNLILRMAALKTLTDEAAT 177
            MSESE+ RI+PL EGQD+ IW IR+EAA NAK +  TLE+E   +EE +  ++F + Q+KASGIIV+ALSNE+LRV+   V+NP  MLQKLGERYDSKTAASRI +MTELI++ ++S K D+GKHID+M+G+LEKLE+++T I +EL+ A+LI+SI+   LI   AALKTL+D +AT
Sbjct:    1 MSESERPRIEPLSEGQDYGIWKIRIEAAWNAKGLSSTLERENSLTEEGDDESKFLSDQRKASGIIVSALSNEALRVVRNDVNNPYRMLQKLGERYDSKTAASRIARMTELISMRYSSIKSDVGKHIDRMKGILEKLESMNTSIPEELSIALLISSIDAEELIPVTAALKTLSDRSAT 177
The following BLAST results are available for this feature:
BLAST of Ggra6587.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IC493.000e-6060.45Copia protein n=1 Tax=Gracilariopsis chorda TaxID=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 56..159
e-value: 1.1E-11
score: 44.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:401640..402173 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6587.t1Ggra6587.t1Gracilaria gracilis GNS1m malemRNAtig00000081_pilon 401640..402173 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6587.t1 ID=Ggra6587.t1|Name=Ggra6587.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=178bp
MSESEKTRIDPLKEGQDFAIWIIRVEAACNAKEIGDTLEQEICTSEEQEK
HTQFRAAQKKASGIIVTALSNESLRVMHGYVHNPCLMLQKLGERYDSKTA
ASRIEKMTELIALCFNSTKPDMGKHIDKMRGVLEKLEAIDTKIQKELATA
ILIASIEESNLILRMAALKTLTDEAAT*
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